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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96514_cuf0 >transcript:BL96514_cuf0-protein ID=transcript:BL96514_cuf0-protein|Name=transcript:BL96514_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=577bp
MESRAPLLPLPVRATVQAATSASRWAVACVMLTELFERAAFFGISDNMQI
FCELKCFPAKYHDPLKFTWIFSGFAYAMNIFGGWLADTALRRFSAILSSL
LVYAAGTLFLVGSAQACDDTNDEDNTVPALYVTGLCLVVLGTGGSQSNLG
LYGAEQFRDTGDESEQERKVHRYFLWYYWCRNFGSVIAYTLVTYYLYQTD
HHVYGYAAISVAVTLAAIFFWSGYKRYRQEPQKEQLFKILIGIVSNRTET
TQQSRNVSRMRDQSYSTSVDSSNEDRDLLRWLDRAKRSKGGRYPDEEVDD
IKQLLSILGIFLTMLVYFTLYSQMSTTYLIQSRYLRLPELDKDDFFYSTI
VVSLINPVSILLMVPLMDMVVYPCLSKSGWRPTYLQRMGVGMFLSMLSVT
AAGAVEVYRGKVHHQGSVFHQNISGQVYNATDLSVFIQVPQFFLSGVSEI
MAVVTGFHFAYTQAPRRMKGTVMGLFLLMFGLGSYLSIGIASAFNITVEG
IGSPRRLNINLNNSHAERFLFFLAGLMFLDLGLFWVLARRYKYKTYLTKA
KDFERSTSCSSPRDYGSTNQVSTSIQS Run BLAST on NCBI mRNA from alignment at Sc0000006:3035373..3042495+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96514_cuf0 ID=transcript:BL96514_cuf0|Name=transcript:BL96514_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7123bp|location=Sequence derived from alignment at Sc0000006:3035373..3042495+ (Branchiostoma lanceolatum)
GTCTCAAACCCGGAAGTGTGCAGCAGTGCAATGTTTATGCCACCGATGGA
CAAAGTCAAGGCGTTATGATTGTCAAACCATGGATTGAATGAACCTTACA
GATCACAATTAGCGTACAACGTGTTTGAGAGTCGACTCAAAGCTGTGAGA
TTCGACTCGTACTCTACGCATGGAAAGCCGCGCGCCACTGCTTCCACTAC
CGGTACGAGCGACCGTCCAGGCCGCCACTTCGGCCTCGCGATGGGCGGTA
GCCTGCGTCATGTTGACCGAACTGTTCGAAAGGGCCGCCTTTTTCGGCAT
CTCGGACAACATGCAGATCTTCTGCGAGTTGAAGTGTTTTCCTGCCAAGT
ACCACGACCCTCTGAAGTTCACGTGGATCTTCTCGGGGTTCGCCTATGCC
ATGAACATCTTCGGGGGCTGGCTGGCCGACACCGCGTTGAGAAGGTTCTC
AGCTATCCTGTCCAGCCTTCTTGTGTACGCCGCAGGTACGCCTTCACAAG
TTTTCATGGGTTCTTTTTTGTTGTCTTTCTTCTTTTCCCCATTTGAACAA
AATTAGAGCGTTTAAATGCCGTGACATCGTTATGTATAGCATTGCACAGC
AAAAGTTTGTGGACGTCTACAAATTCATGGGTCTCTGAATGTGTATAGAA
AAGCAGTTTGATATTGAAACTGAAAATAAACATCAATTCATTATCACAAA
AGGATAGTACTATTGAAAAAGCTTAGGAAATAGTACTTTGTATTTGTACA
CGCAAGCAATTTGTGCTCTATTTCATGGTCTACATTTTGTGCCATCTGTA
CGTACTAGTATGATCGTATTGCATTGAAAAATTTAGGATCATTTAGTTGT
GAACGTATAGAAGAATTTTATATTATAAACAAGGAAGCATTTATTAGTAA
AAAATCTATGGTAGTTGAATCCCATCTATAGGTAACGAAAATTGGAAAAG
TTCAGTAGAGAATATTTCTTTGCATCATAATAATAAGACCTCATAACTAC
ATTTTTGTATTCTTTGATACACATCTGATGCCAGGTACCCTGTTTCTTGT
CGGGTCGGCACAAGCATGTGATGACACCAATGATGAAGATAACACGGTTC
CCGCTCTTTACGTCACCGGACTGTGCCTGGTTGTCCTGGGAACGGGAGGC
AGCCAGTCCAACCTGGGCCTGTATGGTGCCGAGCAGTTCAGGGACACTGG
GGACGAGAGTGAGCAGGAGAGAAAAGTCCATCGATACTTCCTTTGGTAAG
AAACCAGTGGAATAGCCCCTTACTGTAGTACTTGCGCAGATGTGTGGCCC
AATGACTCTAATTTGTTTGTTTGTCTGTTTATCTATTTCTTTTTTGTATT
GCATACCTAGTAAACCACGCCTCATGTCGTAACACGCCAGGTTTGTACTG
AAGCTGCACATCCGGACTTATTTATTTGATCCCCTTACACCGGGATGGAC
CCCTACTCTTTTCAGTGGGTGTGGCTCTCCTCAAACCACATGATGTGGGA
ATGACTTTGACAGACATCATAATGACATTGCGGAACACGTGTTCTCCTTT
TGTTTAGAGCGAAGCTTTAGGAGAAAGCCTAATAGTATTCATCTGGTTCC
AAACAATTCCTACAAGTAACAATTCCAAGGTATTTCTGTAATAGAAACTA
GGCTCGAACTACAGGCTCCTTACTGCTTTTAAAGTGATTTGAACAAATAT
CATGGCAGAATTAAGGGTGCTACGTTGCCGTCGGTGCTTTTGTTACATGG
AGTTAGATCAACCCAGACATCTTTGTCGTGGCAGTAAGTTTTCATTGACA
CACTTGTTGTGTTTGCAGGTACTACTGGTGCAGAAACTTTGGCTCCGTCA
TTGCCTACACTTTAGTGACCTACTACCTGTACCAGACGGATCATCACGTC
TACGGTTACGCCGCTATCAGCGTGGCTGTGACATTGGCCGCCATTTTCTT
CTGGTCAGGATACAAGCGTTACCGACAGGAGCCCCAGAAAGGTACATCTA
CTTAGATGCATTCTGCCTCTAGTTAGTCTAGTATGTAATTGATATTATTT
GATTTATATGTAAAACTCAATAGACTAAAGCGGCTATCTCACTGAAGCTG
CGGCACTTTGGCGGCGTCGCTGCGCCCTAAATTGAATTTGTTTTACCGTT
GACAACAAAACACACAAAGTTAGAAAAGATTCGTTTTTATCAATGAAATT
TTAAACTCTGTCAAATCGCACGGTTGCAACGAGGTGGCCAAAGTGCCGCA
GTCCAATGAGATACCCGCTTTAGCTTCTAGTATGTGTACTACTACTACTA
CTACTACTACTACTACTATGTGATGTCATATGATTTATATGTAAAACTCG
ATAGAATAAGAGGCACTTTTCTGTGCAACGCTTACACAGGATGCAGAGAG
ATTCAATCATTCAGTGACTACATCTTGGTTAACGCGACATTGCGGCTGTA
CTGGCTGTATTTTCCAGTAAGCCCACAAAAACATGATTTTCCTTTTTTCT
TTCAGAACAACTGTTTAAGATCTTGATAGGGATAGTTAGCAACCGAACCG
AGACCACTCAGCAGAGCAGGAACGTGTCCAGAATGAGAGACCAGTCCTAC
AGCACTTCAGTCGATAGCAGCAATGAAGACAGGGATCTTTTGAGATGGCT
GGACCGGTAAGAACGGAAGTTCTTTCCATTAATGTCAAGTGCACGGATTT
TTCTTGGCCACATCTTAGTGTTCATTTCTGCATACATCTGTGATTGTAAT
GTCGTTTTCTTAATTGTTTGAGTTAAAAGTGCAAAAAGATCCGCACTGGG
TATTCAATTATGTATATTTACAGATTAGGTAGAATTATTCCCTATACATT
TGTGTGGCGTCGTGTTGGCCAAACGATTAGGGTCGTTGGACCTGAGCTAG
AACCCAGAGGTGCTGTGTTCAACATGCCACGAATGTTGTGTCCTTTGGAA
ATCACTCCACCTAGGTGCAAAAATGGATACCCGACTTCGGTTGGGGATGT
AAAAGGCGGTGGAAGGAGAGGAATGGCCTCCGCCTTCCAATACCGTGCCC
TAGACACAGTGGATAACAAACCACTGTCCCTACGGCCTCAAAAAAACTAT
GGGACTGACTTTACCTTTACATTTTTACCTAAAATTATTCACATTACTCT
CTTGCCTTCTTTCAGGGCCAAACGTAGTAAAGGGGGAAGGTACCCGGATG
AGGAAGTTGACGACATAAAACAGTTGCTAAGCATCCTGGGAATATTTCTG
ACAATGCTCGTGTACTTCACCCTTTACTCTCAGGTAAGAAACGGAATTTT
GGCGAAGCCTCAGCAGCAAGCCTAATAGTCTGGTTCCAAAGAATTCCAAC
AATTTCACAAATATTTCTGCAATGTTTCCGCGCACACTCTGTGGACACCG
TAACTTAGTTTCTCCGCCTCGGGAACAAGCTAATTAAGTCAAGGCCGTAA
ACCCACCCCCGAGCGGGCTAATCTGTCTGGGCGGGCGGGCACCACTCCCA
GCGCCGTAGAGATACCGGGGAGCTCCCGACGGTATGGTTTCCAGACTACA
CTTTCCCGCGAGTAATCTACATTATATATTATTTCAGATGTCAACAACAT
ACCTGATTCAGAGCCGTTACCTCAGGCTCCCAGAGCTCGACAAAGACGAC
TTCTTCTACTCAACCATCGTCGTGTCTCTGATTAACCCCGTCAGCATTCT
GCTGATGGTGCCGCTCATGGACATGGTGGTGTACCCCTGTCTCAGCAAGA
GCGGCTGGCGTCCCACCTACCTGCAGCGCATGGGTAACATAACCTCTTGG
TTACAGTTTCAACTTTCGATCCGACAACGGGAAAGAAGGTTGAAATGACC
TTTCGCAAATGACGTCATTGTTGGATCAAAGGTGGTCGGAAGTCTGTATC
GGCCTCCGTCCCGGCTGATTGAAAGTCTAATCTTAAATCAAGTCAATGAT
TTGTTGTATGGTAGGCATCGGTTCTAAGGAAGAGGCTTATGCAATTCCAC
ATTCTACTTGCTGCTTAACCCCATTACTAACCAATACACATTTGGTCCCT
ACGGCTACCTTAGCAGGCTGGAGAAAGCAAATACAGATTCATATATTCGA
ACCTAGAAATTATCTTAACTGATTTTTTTTACAGTTTATCAAAAACGTAT
TGCAGATATACGGAGTCACTAACAATCGAATGAATGGGAACCGGTTTGGG
ACTTTAGGATTTCGTGCATTTAACCGGAGTGTGCGTTAATCCGTTGTGTA
ATTAAGCGGCTTTTACTGTATTACTTTTTCCACTAGGTGTTGGCATGTTC
CTGTCTATGTTGTCTGTGACGGCAGCTGGTGCCGTGGAAGTGTATCGCGG
CAAGGTTCATCACCAGGGCAGCGTGTTTCATCAGAACATCAGCGGACAGG
TGTACAACGCCACGGACCTGTCCGTCTTCATCCAGGTCCCGCAGTTCTTT
CTCAGCGGCGTCAGCGAGATCATGGCGGTCGTCACAGGTGGGCTTCATAA
CCTAGTACCTCCGTTGGAAATAAATCGACAATGTTACCATTCCGTATAGG
GGTCGTGTGGCGTAACGGCAGGATTTTAAACTCAGAACCCAGGGGTCCCG
GGTTCGAATCCCCTGACGCCACCATACCGATCTTGTGCCCTTGGGCACTT
TACACGACTTTCCCCACTCCGCCCACGTAAAAACGGGTACATTATGTGTG
TGGGTCACGACATCAGCAATAGCTGCCTGTGTCCCACGTGTATTATTGCA
CTGTTGCAAATCCAAATCCGTGGTTGATGCCTCTGATGAGTGATAATTGT
GTTCTTAAAGGTGGTTCTTAAACGGAGATTATGGTGGTCGTCACAGGTGG
GCTTTATAAGCTTGTTCACACTTCCGAGTACGCATGCGCGGCGACAGCTG
CAGGAATCGTGGGTAATATGCCAAAGGTGAAGGCCCCTGACTTGTAAACA
TTTCTCTTCTTCATCGTTGTCTCGATTTGCATAACACTATCCAGACATGT
TTTGTTCATGTCTCAGGGGCCTTCACATTACTCACCATTCATGCACCGCG
CATGCGTACTCGGAAGTGGGAACGAGCTTATAACCTCTGGTGGAAAGAAA
TCGTCAATGATACCATTTCATGGCCAACAATCATGCCTTTGATGAGTGAT
AATTGTGTCCAGGTGGTCTCTAAACGGTGATTGCGACAATGCCAGTCAAC
CCTAAAACACGACGTATCCTTCCGATTAGCAGAGAGAAATCAACCAAAAG
ACTTTGACCCATCAATGATGCCACGTGTCCACGAAATCACATGACAGAAA
TGGTGGGTCATAATTCGTGAAGAAGGCCTTACGATCGAAGGTGTACTATT
CGAGTATACATAGTAGAAAACCAAAGACAAAGGATCATGTCATAGCTTCT
GCTCTCCAAGCAGAGTGGGGGAAGATCGTGACCTTTTTGTCCTATGCCCC
GTTTTTTGTCTGCTCCCCCATCATTGGGACTAGGTGTCCCGCTCCCCCAT
GGATGCCAAAATACGGGACATATGATAAAAAGCTCATAATCTTCCCTCCC
ACCAACCTATGCTTGGAGAGGAATAGCTTCGTACTATCTCAGTCTAAAGG
TTTGAGAGGCTACAGGCAAGAGTTTGCGTCTTACCTACTTAATTTTCTAC
CCAGGGTTTCACTTTGCGTACACGCAGGCCCCCAGGAGAATGAAGGGGAC
CGTGATGGGGTTATTCCTGCTGATGTTCGGCCTCGGCAGCTACCTGAGCA
TCGGGATCGCATCAGCTTTTAACAGTAAGTAGCATCACCGACGCACACGC
CTGAAAACAGTCCCATTTCGAAAGCGTTAATGGTGCATATTTAACTACTC
AACAATCAAATAGGATTCAATTTTCTGTGCAACGGATCGGAACAGAATTG
ATTTATGAATTATGCTATTAAACGTCTAGGAATGTAGTATACAGTACTAG
TATTTCGTCAATTATTTGATTCATTACTGTTTTGATTTGCTTTCTAAAGT
CTTACAGCGGTATCCTCTCCTCCTTGCCCCGAATGTTGTTAGTCTGTCGT
TTCAACGACGATGACCAAGACATCACCCCCGGACACGCTTCATATCGCAG
CTAGAACGCTATAGCCTCCACCATGCCCTTCTACCGGGAGTACAGATAGT
AGAATTCGGCAAAAAGGGCAATACCGGTCTTACAATAAGGAGATGCCATA
GTGCCTATCTGGCGGAAAGAGGGGATGGCATAGGTCTAATCCCCTCTTTT
TACCATAAGGAGATTTCATAGTGTCTTTTGGCGCAAAGAGGGGATGGCAT
AGGTCTTATCCCTTCTTTTTACCATAAGGAGATTAAATAGTGCCTATCTG
GCGAAAAGAGGGGGTGGCACAGGTCTTATCCCCTCTTTTTACCATAAGGA
AATTTAGATTTCATAGAATATGGGATAAGACCATCACAATACCACTATCC
CGACAAATTTTTTATCCCGGATTTAAAGCTAGTATACAATTCAGTACTAA
ATAAAAGGGATAGATAATCAAGTCTTCGTCTTACCCCCTTCCTTCTCTTC
CTCCTAAGTCACGGTTGAAGGCATCGGCAGTCCCCGCCGCCTCAACATCA
ACCTGAACAACAGCCACGCCGAGAGGTTCCTCTTCTTCCTGGCTGGGCTG
ATGTTTCTGGACTTGGGACTGTTCTGGGTCCTGGCCAGACGGTACAAATA
CAAGACCTACTTGACAAAAGCCAAAGATTTTGAAAGAAGCACGAGCTGTA
GCTCTCCTAGAGATTACGGCTCAACGAATCAGGTATCCACTTCTATACAG
TCATGAGAAGTTTTGTATTCGATAGTAATTAAGTTGACATGTGTGTTGTA
GAGCAATGAACATTCAATGTTATGCAACTGTAGTAAAGTTGGGTGCAGTG
TGACATCTCTAGGGGCACTCCAACGATATTAAATGACTTTATAAATGCAT
ATTTTTGAAAAATGGAATTATTGAATGGAAATGTTTTAGAGATGTTATTA
ATCCTACAAATTCCTCTTGCTGGAATAGTAGCTATCAATAATGTTTTGGC
AACATGTACACGAATGTATATGACATGTATTCGCTAGAAATCAGGTCTCC
TAAACCGTGTTTGATAGTACGTG Coding sequence (CDS) from alignment at Sc0000006:3035373..3042495+ >transcript:BL96514_cuf0 ID=transcript:BL96514_cuf0|Name=transcript:BL96514_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1734bp|location=Sequence derived from alignment at Sc0000006:3035373..3042495+ (Branchiostoma lanceolatum)
ATGGAAAGCCGCGCGCCACTGCTTCCACTACCGGTACGAGCGACCGTCCA
GGCCGCCACTTCGGCCTCGCGATGGGCGGTAGCCTGCGTCATGTTGACCG
AACTGTTCGAAAGGGCCGCCTTTTTCGGCATCTCGGACAACATGCAGATC
TTCTGCGAGTTGAAGTGTTTTCCTGCCAAGTACCACGACCCTCTGAAGTT
CACGTGGATCTTCTCGGGGTTCGCCTATGCCATGAACATCTTCGGGGGCT
GGCTGGCCGACACCGCGTTGAGAAGGTTCTCAGCTATCCTGTCCAGCCTT
CTTGTGTACGCCGCAGGTACCCTGTTTCTTGTCGGGTCGGCACAAGCATG
TGATGACACCAATGATGAAGATAACACGGTTCCCGCTCTTTACGTCACCG
GACTGTGCCTGGTTGTCCTGGGAACGGGAGGCAGCCAGTCCAACCTGGGC
CTGTATGGTGCCGAGCAGTTCAGGGACACTGGGGACGAGAGTGAGCAGGA
GAGAAAAGTCCATCGATACTTCCTTTGGTACTACTGGTGCAGAAACTTTG
GCTCCGTCATTGCCTACACTTTAGTGACCTACTACCTGTACCAGACGGAT
CATCACGTCTACGGTTACGCCGCTATCAGCGTGGCTGTGACATTGGCCGC
CATTTTCTTCTGGTCAGGATACAAGCGTTACCGACAGGAGCCCCAGAAAG
AACAACTGTTTAAGATCTTGATAGGGATAGTTAGCAACCGAACCGAGACC
ACTCAGCAGAGCAGGAACGTGTCCAGAATGAGAGACCAGTCCTACAGCAC
TTCAGTCGATAGCAGCAATGAAGACAGGGATCTTTTGAGATGGCTGGACC
GGGCCAAACGTAGTAAAGGGGGAAGGTACCCGGATGAGGAAGTTGACGAC
ATAAAACAGTTGCTAAGCATCCTGGGAATATTTCTGACAATGCTCGTGTA
CTTCACCCTTTACTCTCAGATGTCAACAACATACCTGATTCAGAGCCGTT
ACCTCAGGCTCCCAGAGCTCGACAAAGACGACTTCTTCTACTCAACCATC
GTCGTGTCTCTGATTAACCCCGTCAGCATTCTGCTGATGGTGCCGCTCAT
GGACATGGTGGTGTACCCCTGTCTCAGCAAGAGCGGCTGGCGTCCCACCT
ACCTGCAGCGCATGGGTGTTGGCATGTTCCTGTCTATGTTGTCTGTGACG
GCAGCTGGTGCCGTGGAAGTGTATCGCGGCAAGGTTCATCACCAGGGCAG
CGTGTTTCATCAGAACATCAGCGGACAGGTGTACAACGCCACGGACCTGT
CCGTCTTCATCCAGGTCCCGCAGTTCTTTCTCAGCGGCGTCAGCGAGATC
ATGGCGGTCGTCACAGGGTTTCACTTTGCGTACACGCAGGCCCCCAGGAG
AATGAAGGGGACCGTGATGGGGTTATTCCTGCTGATGTTCGGCCTCGGCA
GCTACCTGAGCATCGGGATCGCATCAGCTTTTAACATCACGGTTGAAGGC
ATCGGCAGTCCCCGCCGCCTCAACATCAACCTGAACAACAGCCACGCCGA
GAGGTTCCTCTTCTTCCTGGCTGGGCTGATGTTTCTGGACTTGGGACTGT
TCTGGGTCCTGGCCAGACGGTACAAATACAAGACCTACTTGACAAAAGCC
AAAGATTTTGAAAGAAGCACGAGCTGTAGCTCTCCTAGAGATTACGGCTC
AACGAATCAGGTATCCACTTCTATACAGTCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000006 | genome | Sc0000006:3035373..3042495 + |
Properties
| Property Name | Value |
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| Transcript id | BL96514_cuf0 |
| Biotype | protein_coding |
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