transcript:BL96519_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96519_cuf5
Unique Nametranscript:BL96519_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96519_cuf5

>transcript:BL96519_cuf5-protein ID=transcript:BL96519_cuf5-protein|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=286bp
MKDFKMVCPENMFPLALSLLAVTFLPVVFGQQIDFGCVLKHCSKETIVCV
ANTTCRDALTCLGGCGSGSNMTCPVDCLFSYGYEDEQFLKLLSCTTVQNK
CMSNVPSTFNCTKPQKLALNFTFDMLKGRWYGVRGRNPPQDCYGCYSYLY
VPDPTRPKGDYVMTNTFDFKTLTGETRHIKIEFSEEPTANPAIWKATGST
LGVKGLSEVNEEWRAVALAPDHADGDTLLTYYCGTSMGIGYEGMMLFSRS
QTLSSGAYHAAKTAALAHGYDLDKFCSPDQAHCSKR
Run BLAST on NCBI

mRNA from alignment at Sc0000006:4285439..4289861+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96519_cuf5 ID=transcript:BL96519_cuf5|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4423bp|location=Sequence derived from alignment at Sc0000006:4285439..4289861+ (Branchiostoma lanceolatum)
CTTTTAGACATTGGAGTTTGGACGTTCTTGAATGAAAGACTTCAAAATGG
TGTGCCCTGAAAATATGTTTCCCCTCGCCTTATCTCTGCTTGCCGTAACA
TTTTTGCCAGTCGTGTTTGGCCAGCAGATTGACTTCGGATGTGTTCTAAA
ACACTGTAGTAAAGAGACGATCGTCTGTGTCGCCAACACGACCTGCCGTG
ATGCCCTCACCTGCCTTGGTGGCTGCGGTAGCGGTAGCAACATGACCTGC
CCCGTGGACTGTCTCTTCTCCTATGGGTATGGTATTGATGGTGCATGTAC
ATGTTTGTGTGTAAATGTATTCCATGTGTGTGTGTGTGTGTGTTTAGTGT
GCGTGTAACAAGTGTGTAGTAAGTGCTGTGCTTAGGCTCATAACAAATGT
GACCCTTGTATCATGTACATGTAGTTACTTTGTTTTCGTTGTTCTTGATA
AGCTTTGATTGAGTCTTGATGATTTTTTTTACCACATCGAAAATACATAT
GATATAGAAATGACATAAGACCCAACATGCATGTTACAACTTGCCTATGG
TGTGCACGACATGGTGTACAAACTTACGCTACTTCGCTTCAGGTACGAAG
ACGAGCAGTTTCTCAAGTTATTATCCTGTACGACTGTCCAAAACAAGTGT
ATGTCAAATGTGCCATCAACCTTCAACTGTACCAAGCCACAGAAACTGGC
ACTGAATTTTACTTTTGATATGGTAAGGCATACACTTCAGTTATTTCAGT
TGAAAATCCTACCCTGATTTCTTGAATCATTGCTTCAAGTAACAGCGTTT
TAGCGATAGAACCTCCTTGGTTTTAGTAACTTTTAAAATAGAATTTTCAC
ATTACCTGTTACTTTATAGGTTGATAAAGGTAAACAATATTCTAAAGACC
ATTCTGTCTCTACAACAGAGGGGTAATGGATGTTAGTTAAAACTTCCAGA
AGTACTAGTAATCTCCGTATTCAATCCAGCTGTTAGGAGATCGGATTGTT
TAAAGATAGATCTATCATTACTTTGCTATTCTATTAGAATTGCCCCTTCT
ACAATCACGAAAGAAAGGAGCAGTTTAAAGAAGATACCAAATTCCATCCT
TATTTCTTCACGTTTACAGACAAAACGAAAACTACGTATACTCTCCTCTT
AACACAAAACCCACACATCACAGAAAAAGTGGGATCATTCGTCTTCCACA
GCTGTCTTGGAAAAAGAAGTGAAACCCAATAAGTAAGAATTTATTGTCAT
TATTTAGACTAGTCACATGACTCTGTCCGTCCTTTTCATTTTACATGTCT
TGCAATTAGCCTCCGGGCAAGAACTTCTGATAAACTTTCTATCCAACTTT
CAGCTGAAAGGACGGTGGTATGGCGTAAGAGGCAGGAACCCGCCTCAGGA
CTGCTACGGCTGTTACTCTTACCTCTACGTACCGGACCCAACCCGACCAA
AGGGTGATTATGTCATGACAAACACCTTCGATTTCAAGACGCTTACTGGT
AAGCCAACTACTGTAATTCTTGATCTGTTAACTGTAACTTTATTTTAGCT
GATTTAACTGTCACTAGTCAACAGCTAAAATTTCATCATCGCTGATATTT
GATCACTAATACTTGAGACAGTAATGTTTGTTCCCACCGTTAAAATTAAG
TGCCGTGACCTACTCCATTTTCCCAAAACCGTTATATTTTCCTGCCGCTA
ACGTTATATTAAAGTGATTTACAGTATATTCGAGTGAGACAGGTTCACTT
TTTTGGCGACGCCTCAAGGGCGGAGGCATTATTTTACAGTATTTCGATCG
CGCTGAAAATAATTTTATAAACTGCACGAATGCGAATCCCTATAGACCCA
TTTTTTTTATTTGCATAGACTTTGATATTATGATCATTGTGCTCCAATTG
GTTTCAGCTGGGAAAAAAATTCTATGAATCTCCCTTCAGTGTACTGTAGC
GTGCTAGTCTCTACCAGACTAACCGCGTCGGCTATGGAGAGAACATTTGC
CGGGGGACTTTGGCCATGGAGGATAACATTCCCATCTTATTTGACCTTAT
CTCCGTAGCCGACTCCCTTCATACAATTGACTCTATTTGGCCAATTTCTA
CTATTTTCCCAGCGACCCGCGGAGACTGGTAGAGGCTAGTAGCGTGCGTG
CCTCTGGAACAAGAGGTTGGAAGTTCGAATCTCGGCTGTTGACGCTCACG
CTAGAAATGGTTGCAGACCTTATAGGATGGGACTAGCACTGTTCACTGAT
TGAATTTGCCGGGAAAAAAGAGCTAAGGAAATTTCCCCGGTACAACGAAC
CTGTAAACAGTATACATAGTGTCTGTCTTCTCTGTCATGACCACATATGG
TAAATGCAGAAACGTTCGCGATGGTTTTATGTTCACGGTTTTCACGGTAA
GCTCTCTGCCGCGAACTTAAAATAACCGCGAACACTTTTCAACTGTGTTT
CTGTAGCGCTACTATATATATTGTTTCGAACGCGAACTGAAAACCATCGC
GAACAGTCCATTGAGGATAAGATGTCCTTGGCTCTTCAGCGAGCTAAATT
GGTTCAAGATCACTTTTCCTTTCTTTCACTTTCCAAAGGAGAAACACGCC
ACATCAAAATTGAGTTTTCAGAGGAACCAACCGCAAACCCTGCTATCTGG
AAGGCGACTGGATCGACACTGGGTGTGAAGGGGCTATCGGAGGTGAACGA
AGAATGGCGGGCTGTTGCCTTGGCCCCCGACCATGCCGACGGGGACACTC
TCCTCACCTACTACTGCGGAACCTCTATGGGGATTGGGTACGAGGGCATG
ATGCTGTTCTCTCGTTCCCAGACCCTCTCAAGTGGTGCCTACCATGCGGT
CAAGACAGCTGCGCTGGCGCACGGGTACGACTTGGACAAATTCTGTTCCC
CGGACCAGGCCCACTGCTCCAAACGTTGAACATNAGAGCTAAGGAAATTT
CCCCGGTACAACGAACCTGTAAACAGTATACATAGTGTCTGTCTTCTCTG
TCATGACCACATATGGTAAATGCAGAAACGTTCGCGATGGTTTTATGTTC
ACGGTTTTCACGGTAAGCTCTCTGCCGCGAACTTAAAATAACCGCGAACA
CTTTTCAACTGTGTTTCTGTAGCGCTACTATATATATTGTTTCGAACGCG
AACTGAAAACCATCGCGAACAGTCCATTGAGGATAAGATGTCCTTGGCTC
TTCAGCGAGCTAAATTGGTTCAAGATCACTTTTCCTTTCTTTCACTTTCC
AAAGGAGAAACACGCCACATCAAAATTGAGTTTTCAGAGGAACCAACCGC
AAACCCTGCTATCTGGAAGGCGACTGGATCGACACTGGGTGTGAAGGGGC
TATCGGAGGTGAACGAAGAATGGCGGGCTGTTGCCTTGGCCCCCGACCAT
GCCGACGGGGACACTCTCCTCACCTACTACTGCGGAACCTCTATGGGGAT
TGGGTACGAGGGCATGATGCTGTTCTCTCGTTCCCAGACCCTTTCAAGTG
GTGCCTACCATGCGGCCAAGACAGCTGCGCTGGCGCACGGGTACGACTTG
GACAAATTCTGTTCCCCGGACCAGGCCCACTGCTCCAAACGTTGAACATA
TAGCTTCCTTCGCCGAGACCTTGGTATTTGGGGCGGCAGCGCTGATTTGC
GCCAGTATTCAACAACCAGGTTCTATGCTATTAGGCCTTTGAGAGCCTGG
CCCATGTTAAAAATCAGATCAGAGCTCCCGCCAAAGAATAAACGCCGACC
ACACCTAGAAGGTCCGGGCATAAGCAAACCGTAATGTCTGTTCCAACTTC
TAAGTAATTTAACTGATATCCCACCTGGGCCCTGTTGCAAACTTTCCTTT
TTTTTCATTTTCACGTCTGAATAAAACCTGTGTACTGAGTAGTCCGAGGA
TGTATTGATTCCATAGAGTTCAAGGTGCAATCTAAAGATTGTGATGGAAC
TGTAAAGGTTTGTCCGAGGACTAACTTGAAGCCAAAGTCTAGTCCTAGCG
ACTTAAGAGTGAAGTGCATCCGTCCGGACAACCCTTACCTTGCAGGTCGA
CAAAGGGCCGAATCCTTGAAAATTTTGGCTCAATCTGGAGAATTTGGATG
GCTGATATGATACATCAGAAACGAGGGGTCAAAGGTAGGGTTTCTTTTAT
GGTTTCTTTACTACTGGCAGCTTTTTTCGGAGTTTGAGCTGAAAAAAAAT
ACCCTCTGTTTTCTTAGCATGGTTATCAAATATACCCTTGTGACTTTCTG
GTGGAGAAGAGTATTTAAGATTGAAATTTTGGTCAGTAGTAGTACTTTTA
TGAAGCCTTGTTTCCTTGTGTTCTAACTCGGTTTCCTTTGAGAAGCCCGA
TGTCAGCCCCAAACATGTTCTTAGGTGGAACAGATAAATCACCAAATGCC
CAACACAAGGGTTTTGACACAAA

Coding sequence (CDS) from alignment at Sc0000006:4285439..4289861+

>transcript:BL96519_cuf5 ID=transcript:BL96519_cuf5|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=861bp|location=Sequence derived from alignment at Sc0000006:4285439..4289861+ (Branchiostoma lanceolatum)
ATGAAAGACTTCAAAATGGTGTGCCCTGAAAATATGTTTCCCCTCGCCTT
ATCTCTGCTTGCCGTAACATTTTTGCCAGTCGTGTTTGGCCAGCAGATTG
ACTTCGGATGTGTTCTAAAACACTGTAGTAAAGAGACGATCGTCTGTGTC
GCCAACACGACCTGCCGTGATGCCCTCACCTGCCTTGGTGGCTGCGGTAG
CGGTAGCAACATGACCTGCCCCGTGGACTGTCTCTTCTCCTATGGGTACG
AAGACGAGCAGTTTCTCAAGTTATTATCCTGTACGACTGTCCAAAACAAG
TGTATGTCAAATGTGCCATCAACCTTCAACTGTACCAAGCCACAGAAACT
GGCACTGAATTTTACTTTTGATATGCTGAAAGGACGGTGGTATGGCGTAA
GAGGCAGGAACCCGCCTCAGGACTGCTACGGCTGTTACTCTTACCTCTAC
GTACCGGACCCAACCCGACCAAAGGGTGATTATGTCATGACAAACACCTT
CGATTTCAAGACGCTTACTGGAGAAACACGCCACATCAAAATTGAGTTTT
CAGAGGAACCAACCGCAAACCCTGCTATCTGGAAGGCGACTGGATCGACA
CTGGGTGTGAAGGGGCTATCGGAGGTGAACGAAGAATGGCGGGCTGTTGC
CTTGGCCCCCGACCATGCCGACGGGGACACTCTCCTCACCTACTACTGCG
GAACCTCTATGGGGATTGGGTACGAGGGCATGATGCTGTTCTCTCGTTCC
CAGACCCTTTCAAGTGGTGCCTACCATGCGGCCAAGACAGCTGCGCTGGC
GCACGGGTACGACTTGGACAAATTCTGTTCCCCGGACCAGGCCCACTGCT
CCAAACGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96519gene:BL96519Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96519_cuf5transcript:BL96519_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96519_cuf5-E1BL96519_cuf5-E1-1564476830-70032Branchiostoma lanceolatumexon
BL96519_cuf5-E2BL96519_cuf5-E2-1564476830-70034Branchiostoma lanceolatumexon
BL96519_cuf5-E3BL96519_cuf5-E3-1564476830-70036Branchiostoma lanceolatumexon
BL96519_cuf5-E4BL96519_cuf5-E4-1564476830-70038Branchiostoma lanceolatumexon
BL96519_cuf5-E5BL96519_cuf5-E5-1564476830-70041Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:4285439..4289861 +
Properties
Property NameValue
Transcript idBL96519_cuf5
Biotypeprotein_coding