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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96540_cuf0 >transcript:BL96540_cuf0-protein ID=transcript:BL96540_cuf0-protein|Name=transcript:BL96540_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=488bp
SLPFTVAAGAIDVSLSGRFVRVLLSNFSVEVSYDGSHEVKVEVTGAYRGQ
MCGLCGNYNGDTTDDYMTPDGTVVGDWTTFGDSWLTDIETCPGGPPTTPP
PPCSDAVKTAAESDDNCGLLKDPMGPFAVCHRAVDPAPYFDNCVFDMCGW
GGDTVGLCQNLEAYTDACRAAGVAPFSWRTEERCPEDCPANSMFSSCTSY
CPATCPNPNAEEQCPRGCVEGCKCNDGFILSGQECVSEEQCGCTDNTGRY
YMLGERWTGERGNCVCEAGNVITCVTCDEEQGYRWMMVDGALGCHCVEGP
CADECRSDPCQNGATCIDRLNGYTCECAAGYKGVNCEAPLTCSDLFPRVR
PANNFGRYRDVCYWSSSRRNRRLNYWDARQVCVNRGGTLAMIKDAGVQNF
LKDHIKKSSGGRTQRTYWIGLDDLITERQFVWADDTPLGSYRKFRTSAPH
KTRDCVGLWRTAKLSRWFILKCLDRLPYICQADYDVNK Run BLAST on NCBI mRNA from alignment at Sc0000009:1377813..1386219- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96540_cuf0 ID=transcript:BL96540_cuf0|Name=transcript:BL96540_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8407bp|location=Sequence derived from alignment at Sc0000009:1377813..1386219- (Branchiostoma lanceolatum)
CTCTCTTCCCTTCACCGTGGCAGCTGGTGCGATCGATGTCAGTCTGAGCG
GGCGGTTCGTTCGGGTTCTCCTGTCAAACTTCAGCGTGGAAGTCTCATAC
GACGGTTCTCACGAAGTCAAGGTAGGTGATCCTAGGTAAAATCATTAGTT
AGTATCCAACACAATTAACACTGTTGATGAGAAAGAACTGCAAATGGGTG
CAAAACAACTAATGAACTTCTTTCGTGGATTCCATTGCCATAAAACATAT
CTTACCCAACAGGATGACGAACAAATTGACAATCCGTGACTCCTCCCCCT
CCATTTCGACCTTGTTGAAAAGCGGCCATGTGGCCGAACAAGCATTCGAA
AGAAAATAAAGGCTTTGATTTGACTTGACTAAAGTTAAAATTAACGGTCC
TACCAACACTTTTGCAGGTTGAGGTTACGGGAGCCTACCGGGGCCAGATG
TGCGGTCTGTGCGGTAACTACAACGGCGACACCACCGACGATTACATGAC
ACCGGACGGAACCGTTGTCGGAGACTGGACCACTTTCGGGGACAGTTGGC
TCACAGATATTGAGACGTATGTTCCTTTTGCGATGCTTTTATGTGTACTC
TCTGATTAATTGATTAAATAATTGTATAAGTTGCCTAATACGTTGATGAA
GGTTAGACATCAACTGAAGGTAGTAAGATACGCCAAAAAAAAATTACTCA
AGCAACTGGATAAATTTTGAAACAGTCAGACGTTTCAGACAGCATCCGCT
GTCTTTTGTCAGTGACTGAAACTGAAACGACAGCATTACAGTCACTGACG
AAAGACAGCGGTTGCTGTCTGAAACGTCTGACTGTTTCAAAATTTTATCC
AGTTGCTTGAGTGCCTTTTTTAGTATAAGTTGCTTGTATTGCACTGTTGT
TTTGATTAGATATATCTCATTCAGCTGCTGTTACGTAACGATTAGGGTGT
CTGACCTAGACCCCAGGGGTCCTGGTTTTGAATCCCCTGACATGCCACCG
ATGTTTTGCCCTTTGGGAAAGCACTTAACAGGACTTTCTTCACTCCACCC
AGGTGTAAAAATGGGTACCTGACTTCGTTTGGGGAGATACAAGCGAAGGA
AGGAGAGATGTGGGCTCTGCCTTCCAATACAGTGTCCTAGACAAAGTGCA
CAACAACCCACTGTTACTAAGATCTAAAAAAAGGCTATGTAACCACCTTA
CCTTTACTTTTTTTTACCTTCAGCTGCCCAGGAGGTCCTCCGACAACTCC
ACCTCCCCCTTGTAGCGACGCCGTAAAAACAGCCGCCGAGTCGGACGACA
ACTGCGGGCTGCTGAAGGATCCCATGGGCCCGTTTGCTGTCTGCCACCGT
GCCGTTGATCCTGCGCCTTACTTCGACAACTGCGTCTTCGACATGTGTGG
TTGGGGTGGAGACACCGTGGGGCTTTGCCAGAACCTGGAGGCCTACACTG
ATGCCTGCCGGGCGGCTGGGGTAGCGCCATTTTCTTGGCGGACGGAAGAG
CGTTGTCGTACGTTGCAATTTATATGTTTCAAATGTACATCTATCACCAC
TGTATATAGATATGTATATATACCATTGGTAATGGCAACATTGGCAAGTA
AATTATTCCTACACACACACTGATTCTTAGACCAGTATTGAGCCACTTGT
ATATGTAGCTCTCTTCCTAATGATGTAACGAGCTTGTCGCTACCTGATAC
TACAGATTTAGGCGATGTGCGGTTGAAGCGGTAACTTTGATGCGGTCCCA
AACGTGACTTAATGTGTATTTCATTTTTTTGGACTGAAGTTGATTTTCTA
ATCCAGATGACTCCATTAACCTGGCGTATGTGTGCTTTGTCCTCTATGAA
TATGATCTGGGCTAATTCTAAACTAATTTATACACTTCTGGCAATCAGAC
GTTTTCATTTTACCCTTCCCTCTTTGAGCTTTGATTGCTCTCTTTTTCGT
GCTTTCTTTAAGCCAAATGCAATCGCTGCCATACCGCTCTGGCATGGTAT
GTTTTCAACATAATGTATGTTTTTACGTCAGTCATTTATCCTTGACTTGG
ACAAGCATCCATTAATGCGTCTTTGTCTTGGATTCTAAGGATGCTATTCA
GGGAATATGAAACATCCATAGGACGTTGTAAATGTTTAAAAGAAACGTTG
AGCACTTTCTGTGGTGGCTAATTCACTCACATCCAGATCCATTCTCTAAA
CGAAACCTATTTTCTTACTTTCGTCCGGAACAGCTGAAGACTGTCCAGCG
AACAGCATGTTCTCCTCATGCACCAGCTACTGCCCTGCGACCTGCCCGAA
CCCCAACGCTGAAGAACAGTGTCCCCGCGGCTGTGTTGAAGGGTGTAAAT
GCAACGATGGCTTCATCCTTAGTGGCCAAGAGTGCGTTTCGGAAGAGCAG
TGTGGCTGCACAGACAATACAGGACGTTACTATATGGTCAGTACGAGTTA
ATTGAATGTGTTACTCCTTATAAAACAGCATAGAATGCGACTGTGTGGAC
GAGGGTTTAATTAATTCTTTGATTAAGGACAAGGGAAAGGAAATTGATCT
CGAACCAGTTGAGCTCAAATGAACTCAATGAACAGATGAGCTAATCTTCC
ACTGGTCGTGACAGAGAAGACATACGCTATGTACAGTATTTACAGGTCCA
TTGTGCCGGGGACATTCCCCTAGCTCTTTTCGACAAGCACAATGAACAGT
GGACCGCGGCTTAACGTCCAGTCCTAAGGACTACGACCCTTTTAATAGCG
AGTATGTCGGGTGAGCAACACAGCCGGGATCGAACCCGAAGCTTCTAGTT
CCAGAAGCAAGATTGCTAACCACTAGACTAAACACGCTACATTGGATTAG
ATCTTCTACTAAGGTTTAAAAGTGTAATAATGATCATCGATACTAATTTT
GTATATAATAAACATAAATGACCCTATCCCCTGTAGCTGGGAGAACGCTG
GACAGGAGAGAGGGGAAACTGTGTCTGCGAAGCGGGAAACGTCATCACGT
GTGTGACGTGCGATGAAGAGCAAGGCTACAGATGGATGATGGTGGATGGT
GCCTTGGGATGCCACTGTGTCGAGGGTCCTTGTGCTGGTGAGTAGGACAT
TGTTGTGCCTTCTTAAAGGCACACAAAACTTCATTTCGTAAAGCATACTG
CAGTATGTTAGATATACCACTAAGACCAGTTCTGACTTGTTATATAGATA
AGCGTTTTTAAAACATTTGAAATTCGTGGCGTGGTGATGTAATACTCGGC
GATGTCCATATACCTTTGTGACGTCAGATCTCCACTTTGAGTCTTAGGCC
GACTAACACTCGACATCTGACGTCACAAAGGTCAAAGGTCGTTGGTCATC
GCCAGTATTACATCACTACGCCGCGAATTTCAAATGTAAAAACGCTTATC
TATGTAATAAGTCAGAACTGGTCTTAGTGGTATATTTAAAATACTGCAGT
ATTCTTTACGAAATGAAGTTTATTCTGCCTTTAAAGTCTTACGGTGGTAA
TACATTCACTAGAAACAAGTGCTCATGGTTCGTGTTCTTCTACCGTTGAT
TACGGTGAGTGATGTAACAAACTGTGTTCCAGCACATGCAAATGCGAACC
ACCACATTTTGGACTGATATCCTAACTAAAGCTGATTGTTTATTAGATAT
TTTCCAGGATGTTGCGTTTTAACTAGTCAGAGAGTTCCTTGTTATTTGCA
AGTCTATGCAACATGAGCAGAACCACCTTATATGTGACATTTGTCTCGTC
CTACATTATATATTTTGAGTTATTAATAAGAACTATCAATCAAAATGATC
CAAACACTTTATTAGCGAAGAAATATAATTTAAAATAATATCATTAGGAA
ATTACTATCATACATTATTTCAAGATTTTTTGACATGTATTCTTGTCCCT
CGTTGTATAGATGAATGTAGATCTGATCCATGCCAAAATGGCGCAACATG
TATCGACCGACTCAACGGCTACACCTGTGAATGTGCTGCTGGCTATAAAG
GAGTTAACTGTGAAGCTCGTAAGTTGTCCGAATATCATTAATGAATTAGC
GCCAGTGCTATTGTTTTAGCTGCTACTCCACAGAGGCTTTGGAAACTGCA
AGTGCCAATATTGTTGTTGAATCCGTTAATAGTTTCATCAGGTTGGTAAG
TGACTGAATAAAAAGACTCTTTTTACACGACCAAGAAATTTATTCCACCG
ACGTTTTGGTGACCATCTGTCACCATCTTCAAGGCAATTCTGACTGGTTC
ACATAGTAATGCAGCATAGGTGTTGCTGCTCATACATAATGAGATGCATT
CCCAGACGCAAAATATTTACATATGTACAAGAATCCTTATGAAATAGATA
ATAATCGTTGCATTGTTTTATGATCGATAGTTGTGTATGTGTTACACTTC
TGTACGTTTGGGACCGCATAGTGATGTCATATCCTGTGATTGTACACATG
TAAATATTTTGCGTTTGGGAATATATCTCATTATGTATAAACAGCAACAC
CTGTGCTGTATTACTATGTGCATTGAAGAAGGTGAGAGATGGTCACCGAA
ACGTCGGTGTGATGAATCTCTTGGTTGCGTAAAACTAGTATTTTTATTCA
TTGTTGTTGAATTTTGAAAGAAAAATAACACAAGAAGGACTTTCAGATAA
TCATTCTTTTTGGCTTGTGGAACTGATGATTGATATGAAAAAAATATATT
GGTAAATGGCAAGAGTTTCGTTCATTAAGCATTTAGTACTAGTATTCTAG
TGAAGGTGAGAATCATTAGAACAACGTCATGTAAATCAGGTAGTCATTAA
CATAATTTATGAGAACCCATTACAATATCCTTCTTTGCTAGAATAAACTT
TTAAACCTTGAAGAACTTAATTTAGTTGGGTAAAGAAAATTATAAAAATC
ATGTTTTCTTAATCATTTAGAAACCTCGATAATATGTTAGTCACAAAGAT
AAGCATCATTTGGCAAAGGTATGAGGTCGTGGAACTCTTAAGTTGGAAAA
TGTTAGAATATTATACTGATGAATTTGTGGTAGATCTACATCTTTGGAAT
GATATATGTGAAAGAAGGTTAACATCATTAGTCAAAAATCATGCAAATTA
AGACGACATTTACATAATGAGATACCATCCTTTTGACCCTTCTTTATCTT
TAGCATTGACCTGCTCCGACCTGTTTCCTCGGGTCCGCCCTGCCAACAAC
TTTGGCCGGTACAGGGACGTGTGCTACTGGTCGTCCTCCCGGAGAAACAG
ACGGCTGAACTACTGGGATGCCCGACAAGTGTGCGTAAACCGTGGAGGAA
CATTGGCTATGATCAAAGATGCCGGTGTGCAGAACTTCCTTAAGGACCAC
ATTAAGAAAAGCAGTGGTGGGAGAACCCAGAGGTAAGGAATAACCTAATA
GATCATCAAGGAAAACATTGTTTTGTAGTCAAAATTAGGACGAATATCTG
TACACGATCTAACGGTATGCAAATATTACAACGCTAATGGAAAATGCAAT
TTTTGTACAATCTTTCTGTCAATGAGAATTGAACCTGGTGGTGGTTATGC
TGTCTAAAATCAAATAATTTTCCATCCATCTACGTACTGTAATTGAACAC
CTCGACCTGGAAATATGTTGTGAGTGGAATCCTCTTCATGGCGACCACCT
GTCCATCGCGACCTTTTTGCTCGGTCCCCCGGGTTGTCGTCTTGGGCAGG
TTTTACAGTACTTTATAAATCCAAACACATCATTTCTTCTTAGGGTATCT
CTGTATATTGTGTTTTATTATATGAGAAAGGTTTAATGGTCAATTCAATG
CGACCCTTGCGTAGTAGACAGTGACTCTGACCTCTTGTCAAGACACTATT
ATAGAAGCTGTATATACTATTACAAACGATATGTATGTAATAGTCTGAAT
GTTATTATTGATTTTTATTCTATTCATGTCAAATTCCATTTGTACTATCG
ATCTTGGTCAGCAGGCCTTTTTTTTATAGGTATGGGCTTGTTAAGCAGCC
CTTGCTTAGCATCCTGAATAGCCAAACCGATAAATAAGAATAGATAAATA
TATTTGCCAAAGCAGCCTTTCTATGTACGAACCTAAGATAACTACGCATA
CGTGGCTAGGTGGGGACACTATGTCAAAAATTGTTAGATTTTTTTTAGTA
TACTGGGAAAAGTTGCAAAAAGTTGTTCATTATTTTTGAGTAACTTGCTT
TTGTGTTCGCATGTACATTTATCTGTAAATTTCATTGTTGTTGGAAATTC
TAAGTGAATATTTAAGAAAATTCTATGGTGGTAGTTTACCCATGCATACG
TTGATGAAGGTTAGACATCAGAGTAAGCAATATCTAAAGACAATTCAAAC
TCTACACATGGATTAGATATGGAGATTATATCCGTAGTATATAATTCCGG
ATATCAATAGTTTGCGTATCTTATCCAGTTACTGAGATTGAAACATTTGT
CTTTAAAGATTGTTTTGACATATCGTACATAATTTGTTCTACTGAATGTC
GCTCTCCTTTGTCTCCAATGAGTGAATGTAAAATTCATTTCCATGTATAT
ACAGGGCCTTTTTGGAAATCAACTTTTATGAGTTGTAGGAGCAACCCAGC
TGTCTTGAAATTAGATAAATGAATAGACAAAAATAAACTAGTCAGAGTTA
AGTATTTGTGCTACATATATTTCAGGTTTCCTATGTTAGTTTGGTAATTA
CGGGGTCTTTTTATAAATATGAATTGGTATTGAATTTCCTTTTCATTTGA
GTTGAATTTGTTATAGTTGTGTGCCTATTTCTTAAAAATAGAGGGAACGC
TAGCGACCCTAATGAACACCCCTCCCAATAAAATGGTATGGGGGGATTGG
ATACCCTGCGACGTCACAAAATCAAAATGACGGCCACCACACATGCCAAC
GGATCCAACATTGGTTTTGCTACTTAAACCTGTAATTGCTTTTAAGTTTA
TCCAATATCATTCATTTCTTACTTTAGGACGTACTGGATTGGTCTGGATG
ACCTGATCACGGAGCGTCAGTTCGTGTGGGCTGATGATACCCCGCTGGGA
TCTTATCGCAAGTTCCGGACCAGCGCCCCTCATAAAACCAGGGACTGCGT
TGGACTGTGGAGGACGGCCAAACTGAGCCGCTGGTTCATACTGAAGTGCC
TGGATCGGCTGCCTTACATCTGTCAAGCTGGTGAGCAAAATATGATACAA
TCGACAATCAACCCCACTGTCAAGATTGTGGGGTCGGGTGGCGTAACGGC
AGGGTGTTCGGCCAAGGACCCAGCGGTCCCGGGTTCGAATCCAACCCCTT
ACGCCACCGATGTTGTGCCCTTGGGAAAGGCACTTTACACGACTTTCCTC
ACTCCACCCAGGTGTAGAAATGGATATATTGTTCTCTGTGCGTGGCACTG
TTGAAATAAGTTATGACAAACTTGAGTGCAGTGCCATGCACGTCGTCCTT
GTCTGTCCAGACGTAAAACAACTGTCAAAATTGAACTAATGATTAAATGT
AGTTTTTTTTATTGATCTTGCAAAATTGCAGGAGTTATCCAAGTTTCTCT
TCTGAACCTTCACTAGGTGCATTCTTAACCACTCTTTGCCAAATAAATTC
TTCATCAGCTTCTGTATCTGTATCTGTTTAGCAGGTATAACCGTTCATCG
GCGTAACACACCGGCTTCACAGGCCTACAACGTGTCAGAAATAGAACAGG
GATTTTCAGCAATAACGATAATTATAATTTTGATTCTAGAAGTTATTCAT
GTGCCTTAGTATTCAATGTGCACCCTCCTCAAAGCAGGGCCGCTATCAAT
CGGTTTGTTACCTCACTTAGGGGCCCTGCTATTCCAAGCCGGTATTCTGG
CTTCTTGCGACGCCACCACTAAAACAGTTTTCAGCCAATCAGAGGGTTTG
CTCAAACTCATCTTGGAAGCTGGGAAGCTTTCAACCAATTAGGTTACGGC
GTACATCGTTCGTTTGGGTTCAGAACAAATTAAACGCCGTTTGTACGAAA
TAAGGATAGCTCATTAATTATTCATGAGTAACTGTCAGTAACGTCGCCAG
AAGCCAGAATGCCGGCTTGGAATAACAGGGCCCCTACGCGAGCTAACGAA
CCGAGCGATAGCGGCCCTGCTTTAAGAATGATGCCAATATGCTCTGTGCT
TACAAACATCTTTGTCTCTTTCAGACTACGATGTGAACAAGTAAGATGAT
GACATACATGACGTCATCCTAACATCAACCTCATGACGTCAGGACAACAT
TGCAACAGAGGCTGAATATCGCCCCTGCTAGTAAAGAAATAACCATGAGT
ATAGAAAAGAGCATGAAACATTTTTCATAGCACACACTTTGCATGCTCCA
ATACGTAAGAATATTTCACTGACAAAACTACTTGACAGTAGTGCCTTATA
AGATTTC Coding sequence (CDS) from alignment at Sc0000009:1377813..1386219- >transcript:BL96540_cuf0 ID=transcript:BL96540_cuf0|Name=transcript:BL96540_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1467bp|location=Sequence derived from alignment at Sc0000009:1377813..1386219- (Branchiostoma lanceolatum)
TCTCTTCCCTTCACCGTGGCAGCTGGTGCGATCGATGTCAGTCTGAGCGG
GCGGTTCGTTCGGGTTCTCCTGTCAAACTTCAGCGTGGAAGTCTCATACG
ACGGTTCTCACGAAGTCAAGGTTGAGGTTACGGGAGCCTACCGGGGCCAG
ATGTGCGGTCTGTGCGGTAACTACAACGGCGACACCACCGACGATTACAT
GACACCGGACGGAACCGTTGTCGGAGACTGGACCACTTTCGGGGACAGTT
GGCTCACAGATATTGAGACCTGCCCAGGAGGTCCTCCGACAACTCCACCT
CCCCCTTGTAGCGACGCCGTAAAAACAGCCGCCGAGTCGGACGACAACTG
CGGGCTGCTGAAGGATCCCATGGGCCCGTTTGCTGTCTGCCACCGTGCCG
TTGATCCTGCGCCTTACTTCGACAACTGCGTCTTCGACATGTGTGGTTGG
GGTGGAGACACCGTGGGGCTTTGCCAGAACCTGGAGGCCTACACTGATGC
CTGCCGGGCGGCTGGGGTAGCGCCATTTTCTTGGCGGACGGAAGAGCGTT
GTCCTGAAGACTGTCCAGCGAACAGCATGTTCTCCTCATGCACCAGCTAC
TGCCCTGCGACCTGCCCGAACCCCAACGCTGAAGAACAGTGTCCCCGCGG
CTGTGTTGAAGGGTGTAAATGCAACGATGGCTTCATCCTTAGTGGCCAAG
AGTGCGTTTCGGAAGAGCAGTGTGGCTGCACAGACAATACAGGACGTTAC
TATATGCTGGGAGAACGCTGGACAGGAGAGAGGGGAAACTGTGTCTGCGA
AGCGGGAAACGTCATCACGTGTGTGACGTGCGATGAAGAGCAAGGCTACA
GATGGATGATGGTGGATGGTGCCTTGGGATGCCACTGTGTCGAGGGTCCT
TGTGCTGATGAATGTAGATCTGATCCATGCCAAAATGGCGCAACATGTAT
CGACCGACTCAACGGCTACACCTGTGAATGTGCTGCTGGCTATAAAGGAG
TTAACTGTGAAGCTCCATTGACCTGCTCCGACCTGTTTCCTCGGGTCCGC
CCTGCCAACAACTTTGGCCGGTACAGGGACGTGTGCTACTGGTCGTCCTC
CCGGAGAAACAGACGGCTGAACTACTGGGATGCCCGACAAGTGTGCGTAA
ACCGTGGAGGAACATTGGCTATGATCAAAGATGCCGGTGTGCAGAACTTC
CTTAAGGACCACATTAAGAAAAGCAGTGGTGGGAGAACCCAGAGGACGTA
CTGGATTGGTCTGGATGACCTGATCACGGAGCGTCAGTTCGTGTGGGCTG
ATGATACCCCGCTGGGATCTTATCGCAAGTTCCGGACCAGCGCCCCTCAT
AAAACCAGGGACTGCGTTGGACTGTGGAGGACGGCCAAACTGAGCCGCTG
GTTCATACTGAAGTGCCTGGATCGGCTGCCTTACATCTGTCAAGCTGACT
ACGATGTGAACAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000009 | genome | Sc0000009:1377813..1386219 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96540_cuf0 |
| Biotype | protein_coding |
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