|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96544_cuf6 >transcript:BL96544_cuf6-protein ID=transcript:BL96544_cuf6-protein|Name=transcript:BL96544_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=454bp
IIPRKPVEPKKPAVAAAKATAASVSARDYHQPIPVECMEQEFDRRHANDD
QLFSEEYKALPGDLGIAHAKAYLKKANGEKNRFKNVIAYDNARVVLTPVE
GEPDSDYIHASYIDGYNEEKKFIAAQGPKPNTVHDFWRMMWETGSTAIVM
VTNLEEKGKTKCTKYWPDSGEEVYGQITVTLADTIPMVYYVTRVFLVSKK
DEKQRKITQFQFLGWPDFGAPRNPAELLKFHQKVMTSITSRDRPIVVHCS
AGVGRTGTFITMDAMLAMMAEKGKVDVFGYVSKMRQNRSQMVQAEAQYVF
IYRALLEQHLYGDTEIEVTGIHRHLQNLKREDQHSHKTGMELEYEKLTRV
PVDKANMRNGNLPENISKNRVLQVLPYDTSRVFLQHKTGVTGSDYINASF
IDGYRERDAYIATQGPLDRTVEDFWRMVWEWNSCSIVMLTELQEKERSTC
ARYW Run BLAST on NCBI mRNA from alignment at Sc0000009:1600169..1607434+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96544_cuf6 ID=transcript:BL96544_cuf6|Name=transcript:BL96544_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=7266bp|location=Sequence derived from alignment at Sc0000009:1600169..1607434+ (Branchiostoma lanceolatum)
CATAATACCACGGAAACCAGGTAATACAACCAAACACTTGGCAAGGTTAG
ATATCAATAACTCATTCCCTACCACCTTAGTATGGAGCGTGACTGGTGCC
GGCCGCCATATTGGTCTCCCTATTTGCATTTCAATAGATCTTAGTTCAAC
ACCTTCTGGTATTCTGTTCTTTGGATTGAGCTGTAGACGTTCAATAGTGG
TTATTTGAGAGGGTTAAACGCTCTTGAAATGTCCGAAGACGTTTGCGCTG
TGATTCAATGAAATTCAAGAAAGGACACCAACATGGCGTTGAACACAACG
ATAACGCCACGTGGAACAATTTCATATTTGGGGAATAATCACGCCCGGTT
AAAAGTCTATGCGTTACACAGAGGAACTTGATTAAGGATATATAAATCAA
CAACTTGCATTGTCGATTTGATCGTATTTCAACGTATTCGTTTTTTGATA
AGTTGTTCAGCACAATCATGTTGATTCACATTTATCCTTTTTTGTCGCAG
AGTACCCTACCAATATGTGCAAGAAATCATTATGGTTCTTTATGGTCTTT
AATTTCGTTTCTTTAGTAGAGCCTAAGAAGCCTGCAGTGGCTGCTGCTAA
AGCTACAGCGGCCTCAGTGTCTGCACGAGACTACCATCAGCCCATTCCAG
TTGAGTGTATGGAGCAGGAGTTTGACAGGAGACACGCAAATGACGATCAA
CTGTTCAGTGAGGAGTACAAGGTAATGAAATACAATGTACTTAATAAGGT
AGTTCAGCACAAGCTTATATAGTTTATATTCAAATATAAGGAACTATATA
CTTTATTGTTCTAAGAAATTCATTGGAATTCATTGTACAGAGTATATTTC
ATGCACCAGCTAGCTGTCATGTGTAGACTTTCCTAATTCGTTTTGATTTG
ATAAACGAAATAGGCATAAATTGTCATATTCTTTACCCCAGGCACTTCCG
GGAGATCTCGGAATAGCACATGCGAAGGCATACTTGAAGAAAGCAAACGG
CGAGAAGAACAGGTTCAAGAATGTGATTGCATGTGAGATGCTCCTTTGTT
GTCTTTAACATAAACGAACTTGACGATTACATATACTATATAGGTGAGCT
TTGTGCAAATATTATGGGACTCAATGAATAGCCAGGCAACATACACAAGT
TGAGAAACAGGAATGTAGATATTGTAAGACATACACAAGCAGTTTTTCAG
GTCACGGTCCCTAAAAATGTAGCTTTGACGCTGTGTTTTGTAGAGACTTG
ATAGTCTTAACAATTTTTGCACATATCTCAGCATGCAAGTCAATACAGTT
CCATGCATCTCTTAATAGTGCCATATTTCTTATAGTAGACCTTATTTCTT
AGTATATAGTCATGTGAGTATACCTTTCAATTTTTTTCCTTCAGACGACA
ATGCCAGAGTGGTGCTTACTCCAGTCGAGGGAGAGCCCGACTCAGACTAC
ATTCATGCATCTTACATTGATGTAAGTATCTCATTAAATCGCAAACGACT
GTTGCATCTTTTGATAAAATTGCAGTCTCTTAATAAAATTATTCGATTGA
CATGCAATTCAATTATTCCTATTACCCTTTCAGGGCTACAATGAGGAGAA
GAAGTTCATAGCAGCTCAAGGTGAGGGAGAATATTTTTCACGGTTATCCA
TAACTTTGAATGATGTTCAACACGATCCATGACAGTCACTACGATTTCTT
TGATAGGGGTTAGCTTAATCTTTGATATGCAACCACGCCGTTAACAATAG
TTTGAATTAATGGAATTGGAATATTCTACACGAAGTGACAATCAAATTGC
AATGTTGTGTTTTGCAGGTCCGAAACCAAACACTGTTCATGACTTCTGGC
GAATGATGTGGGAGACTGGGTCTACCGCCATCGTCATGGTTACTAACTTG
GAGGAGAAGGGCAAGGTACGGCAGGAAACTTCTACAAGTACCATACGTCT
AAAACGGTCATAATCACTATTAATTTTTGTTTCGTATTAAGATACGAGAG
AGAGCCATTCTTTAGTGTATAATTCAGGTATTTCTCACGAACAGGAAATA
CAGGGAAGTACACGAAGTATAAGGAGTAAAGGAAATAAATTTTTGAGCTG
CTGAGCTATACACTAATTTGTCTGACAATGACAATAATAATGAGCATCTT
ATGCTTAATCTATTGCATAACATATCATCATCATCTAAAACTATATCGTG
TACAGAGTTGTTATATGTTTGACTTTTTAACAGACCAAATGTACCACGTG
CCCAAGATGCGACAAATGTACCTGCTATGCCATACACTATTATCTACGAA
TGATAATGAGCATCTTTTGCTCAATCTATTGCACAGCACATCATCATCAT
GTAAAACTATATCGTGTACAGAGTTATTATATGTTTGATTTTTGTAACAG
ACCAAATGTACCAAGTACTGGCCCGATTCCGGTGAGGAGGTGTATGGTCA
GATCACTGTGACCTTGGCGGACACGATCCCGATGGTCTACTACGTCACCA
GGGTCTTTCTTGTGTCAAAGGTAACCATGCACCACCAGAACTTATAACGA
CAATGCAGCTTTCTGTTTTAAGTTGCTCTAAATGCTGCCTGTTAAGGATA
TAGTCATTATTGTACTCTCTTCTTAGTCTTACTACAACTATGTTCACATA
TTTTCTGAAGACTCATAGCTATAAACGTCTTCGTTTGATAGAAAGACGAA
AAGCAACGGAAGATTACACAGTTCCAGTTCTTGGGGTGGCCCGACTTTGG
AGCCCCGAGGAACCCCGCCGAGTTACTCAAGTTCCACCAGAAGGTCATGA
CCTCCATCACGTCGCGTGACCGCCCCATCGTTGTACACTGCAGGTATGTG
GACCAATAGGGTGCTTGCACTTGTAGATGCAGCAGCCACATTGGTTTGGA
TGAACATTGACGAGTCTGACCCATATACTGGCATGTGTTAAGATCAGACT
AAGACTAAAACTACATTTAAAGATTCCTATTTGAAGTGAATTTCCGTCTT
AATCATCCAATATGGCGGACAAGACTTGCGTTATAGTTGCTTACTTGCTT
GCTTATGTCGAGATCTTCCAGTCACGAGTCGAGATGGCAGCCCACGTCTT
TCGGTCCTTCATCGCCTGGAGCAAACTATTCACTTCAAAACTAGGAGAAA
TAGTTATAGTTACTTGGATGTAAACGCTCTTTTCTCTCCCGAAAATGATT
TAATCAGTTCGGTAGAAGATAGGATAAAGGAGGTTTCACCTGCTGACATT
TCGGTGTCTGCCAGACACCTTCCTCAGAGCTTCTATCTGACTGGGGTACT
GCTTATCACTCTGGGGAAGGTGTCTGACAGGCACCGAAACGTCAGCAGGT
GAGATGTTACTGGTTGTGAAAAAAGAAAACTCCAATATCCTACTCTGTTC
TCACGTTACGCACATGATACTCGGAGCTGTGCATCGCCGTTCTCTCATGC
TCATCTCAGCAAACGCCATGTGTTTATAGATGCACCTTAACCAATTATCT
ACCTTGTCTATTCCCCACAGCGCCGGTGTCGGCCGTACCGGCACTTTCAT
CACCATGGACGCCATGCTGGCGATGATGGCGGAGAAGGGGAAGGTGGACG
TGTTCGGTTACGTGTCAAAGATGCGACAGAACCGCAGCCAGATGGTGCAA
GCTGAGGTATGTTCACCCAACAATATCTAACTAGGATTATATGAATATAA
ACATAGGAATATACAAACATACGGTCGTTTGATCGTGCACGTGATTAATC
TTGAATATCTTGTCTTACACACTCTTTCGCTGTCAGGGGCTGATTTGGTA
GGGGAGTTAGTGGCCGTTCATTTCCAAGCCAGGTGATAGGCTGAGTTAAA
AATTAAGACGTACCAATAAGAGATCAGGAATCTTTGTCACTATGGAAACC
AATCATGAAAGCCCCCAGCACCATAATAACAGTTCAAAGTCTGACAATAA
TTCATCAACATGATGATGATGTTGTCCGCTTGAAGTGTTGTCCGCTTCTT
GGGGCCCGACCAGAGGAGGGGTGCTAGAAGTATTATTTGTATTCAGACTA
AACCTTGAAAATGAATACATCTTGCCTCGCAATAGAAATTGGGCAATATT
AACTTACATTAGGACACGACCTTTGGCAAAAGAGAAATTACAGAATTCGT
TGGCACTCCATTTAGGGATACGTAGGTCTTCCTTTTTTTCCTCCCCGTCA
TCTTATGTCATTTTCCCCGATGTCGATTCCCTAGGCCCAGTACGTGTTCA
TCTACCGCGCCCTCCTGGAGCAGCATCTGTACGGAGACACGGAGATAGAG
GTGACTGGGATCCACCGCCATCTCCAGAACCTCAAGCGCGAGGACCAGCA
CTCACACAAGACCGGAATGGAGCTGGAGTATGAGGTGAGTTCATGCAGTG
TTTTTATTCACGTTCACGAATTCACGGATGAACAAAAAGCTACTTTTCTC
TTGAAATTACAGAACCTGCAAATTCTAGAAAAAGTGGGACTTTTCGTGTT
GCATTGCCTCAAAAAATAAAAGTCAAACCCAACTTGTGTAGATATAGCCA
ACAGTCGTATTTAGTATTAGTAGCCTATTGTTACAACAACGTCAGTTACA
GTTCACTGACGCATGTATGCTTTCCCTGTGTTCCTACCATCTATTTGCAA
TTAGTCCACGGGCATGAACTTAAAATCAATCTCTATTTATTTCACCCCCC
CCCCCCAGTAATGTATGTCGAAAATTAGTTAGATGTATAGAATAGACACT
TGTCTACCATTTGTACCCTTGCAATTAGCCTACGGGCATGAATTTGCAAA
TAAAAGAAGTATTATTTTATTCTTCTTTGGAATCAGTTATATCGTCTGTG
CATGTAACACCATATCAAACTTTCAGGCTACATTTATTTATTTATTGAAC
TTCTCCATAAAAATGGATGGCATGACGAAACAGGTGTACTCGCGCAGGGG
TCACATTTTCAAGGCCGCCATGCCGAAAAATGATTAAAAAATGGAAAACT
TACATCAGTGGCAGATCTCCCTGTACATCGTAGACCTGTTGTTTTAATAA
GGATAGTCCTCCAGGGACGTCCCCAGATGTGACCCCGGTCGGCCTACATG
TAGTCAACCCCGGTCACAAGGCTCGTCTGAAGCCCCGCCTACTTGTTTTG
TTTAAGCTTCAAGACTATATGTTGTTTGGCAAATCACTTCGTCGGAAACA
CTTTAGCAAAAGGCTACCGTTCTTTTGGTTCATCACATTCTGTCCGTCCG
ATTCGTTGCATGTAGAAACTTGACATTGGCTTTTTGAATGCAAAAGGTCA
AGCTCAGTGTGATCACATTGACGTCTTTGTAACTTATTATTTCTAACATA
GAAACTGACGAGGGTCCCAGTCGACAAGGCGAACATGCGCAACGGCAACC
TGCCGGAGAACATCTCCAAGAACAGGGTGCTGCAGGTCCTGCCTTGTGAG
TAGTATTAAGATGTGTTTCACTTTTCAACTATAATCAAATGACGTACTAA
TAATACTATAACAGATAAGATTGCCCATCTATAGCAACAAAACTGTAACA
TCTTTGATACAGTTTCATTCACTTAACAGGTAGATTCTCGTAATTGATAG
ATCACCAATTGTATTGTTTACATTCAGTTTTCTTTTTTCCACTTCGTATT
AATGTATATATATTGATACTGTGTCTTTGCTCGTATCATATTTATGTGCT
TTTTGCCTGATACTCACAGAATATATGTGGATGAAATTGAAATAAATATA
GCGACGTTCAGATGTAGTGTACTTCCAAAAGGTCGAACGTTTCAGACGTT
AGTGAAAGATTTACAAAACGTTTGTAAACTATTCATGATGTAGTACTTCA
GCTCTACGATTTTATCAGTCATGATATAAAGGTGGACTTACCTGCCTCCT
GTTGTTTCCAGACGACACATCCCGGGTTTTCCTGCAGCACAAGACAGGTG
TGACGGGGTCAGACTACATCAACGCCTCCTTCATCGATGTAAGTCTCAGT
GAACAATTTAGAACTTTTTTTCGTATCAGATTCCCGTGTAAGTAAGAAAT
GTAGATTTCACCACACTGGTCAAAGTTTCAAGTATAGTTTAAGATGAATA
ATTCTATATGTCTGATGATATTAATCAAATATAATATTAGGTCCCATCAT
TCCAGCATTTTACGTTTCCCATACAACCTCGGAAAAATGCTTTTAACAGC
CGCTGTAGAAAAAACCCAAAGCAAACTAAATCGGTAATGTAGCTCTTTCT
CACCATGTTATGAGTTTTTGTGATACCATGTTTATATATGAATACCACTC
TATTTATACGTAATATTTTGTCTGACCCTTACCTTCTCCCTAGCTTATGA
TCTCAATGATCATGCATGCAGGTCGTTTTCATCTTCTCATGAGTAAAGAA
AGTTTTAAACAAACAAACAAACAAACGTACCTTTTCAGGGGTACCGTGAG
AGGGACGCGTACATCGCCACGCAGGGCCCGCTGGACCGGACTGTGGAGGA
CTTCTGGAGGATGGTGTGGGAGTGGAACTCCTGTTCCATCGTCATGCTCA
CTGAGCTACAGGAGAAAGAACGGGTAATTACAAGCACACACGTGTCAATC
TCCGTGAAGAATGGATATTTTTCTATTGTCTTCAAGCGTACTCTTTTGAA
CCACACAGTATTTGTGTCCACAAACTTGTGCTCTGTCCGTTTTATAAGTG
CTGTATAACAGACCTCCCCCGTTGTAGACTCCTTCCGGCTGTTTTCTTTT
TCAAGTTATAGTTTTCTATTACATTTTTTTTTCTTGTTGCTGGCCTGGAA
AAAATGCAAATGTAAGACTATAACTTGAAAAAGAAAACAGCCAGAAGGAG
TCTGCAACGGAGGCTACCTCCCGACCATTTCAAAATTAAGGAACTCAACA
TGGAAGATGCGACGTCCGAATTGAAAAATTACAGTTATTAATGGGACTAA
GTACATCAATATCAAGACTATGAGACTCATATTTATAGATAAATGCAAAA
TACAAAATTACACATATTTATGAATGCAAAATTACGCTAAGATGCGTTTA
TCTTGATAGTCTTATAGATACAAAGAGTGGCAATGGATACCGTGCCGACA
GTTTATTGCATGCTTTGCACGTTATGTTGTCAATAAACGAATTGCCATGG
TACACGTAAAGACTGACACAAGCCGCTGCATCAGAGATAAAAGGGCAAAA
TCGCCAATGCCAGAAAAACATCATCGTTACTGCCGTTATTTACAGAGTAC
ATGCGCACGGTATTGG Coding sequence (CDS) from alignment at Sc0000009:1600169..1607434+ >transcript:BL96544_cuf6 ID=transcript:BL96544_cuf6|Name=transcript:BL96544_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1362bp|location=Sequence derived from alignment at Sc0000009:1600169..1607434+ (Branchiostoma lanceolatum)
ATAATACCACGGAAACCAGTAGAGCCTAAGAAGCCTGCAGTGGCTGCTGC
TAAAGCTACAGCGGCCTCAGTGTCTGCACGAGACTACCATCAGCCCATTC
CAGTTGAGTGTATGGAGCAGGAGTTTGACAGGAGACACGCAAATGACGAT
CAACTGTTCAGTGAGGAGTACAAGGCACTTCCGGGAGATCTCGGAATAGC
ACATGCGAAGGCATACTTGAAGAAAGCAAACGGCGAGAAGAACAGGTTCA
AGAATGTGATTGCATACGACAATGCCAGAGTGGTGCTTACTCCAGTCGAG
GGAGAGCCCGACTCAGACTACATTCATGCATCTTACATTGATGGCTACAA
TGAGGAGAAGAAGTTCATAGCAGCTCAAGGTCCGAAACCAAACACTGTTC
ATGACTTCTGGCGAATGATGTGGGAGACTGGGTCTACCGCCATCGTCATG
GTTACTAACTTGGAGGAGAAGGGCAAGACCAAATGTACCAAGTACTGGCC
CGATTCCGGTGAGGAGGTGTATGGTCAGATCACTGTGACCTTGGCGGACA
CGATCCCGATGGTCTACTACGTCACCAGGGTCTTTCTTGTGTCAAAGAAA
GACGAAAAGCAACGGAAGATTACACAGTTCCAGTTCTTGGGGTGGCCCGA
CTTTGGAGCCCCGAGGAACCCCGCCGAGTTACTCAAGTTCCACCAGAAGG
TCATGACCTCCATCACGTCGCGTGACCGCCCCATCGTTGTACACTGCAGC
GCCGGTGTCGGCCGTACCGGCACTTTCATCACCATGGACGCCATGCTGGC
GATGATGGCGGAGAAGGGGAAGGTGGACGTGTTCGGTTACGTGTCAAAGA
TGCGACAGAACCGCAGCCAGATGGTGCAAGCTGAGGCCCAGTACGTGTTC
ATCTACCGCGCCCTCCTGGAGCAGCATCTGTACGGAGACACGGAGATAGA
GGTGACTGGGATCCACCGCCATCTCCAGAACCTCAAGCGCGAGGACCAGC
ACTCACACAAGACCGGAATGGAGCTGGAGTATGAGAAACTGACGAGGGTC
CCAGTCGACAAGGCGAACATGCGCAACGGCAACCTGCCGGAGAACATCTC
CAAGAACAGGGTGCTGCAGGTCCTGCCTTACGACACATCCCGGGTTTTCC
TGCAGCACAAGACAGGTGTGACGGGGTCAGACTACATCAACGCCTCCTTC
ATCGATGGGTACCGTGAGAGGGACGCGTACATCGCCACGCAGGGCCCGCT
GGACCGGACTGTGGAGGACTTCTGGAGGATGGTGTGGGAGTGGAACTCCT
GTTCCATCGTCATGCTCACTGAGCTACAGGAGAAAGAACGGAGTACATGC
GCACGGTATTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000009 | genome | Sc0000009:1600169..1607434 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96544_cuf6 |
| Biotype | protein_coding |
|
