transcript:BL96546_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96546_cuf0
Unique Nametranscript:BL96546_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96546_cuf0

>transcript:BL96546_cuf0-protein ID=transcript:BL96546_cuf0-protein|Name=transcript:BL96546_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=362bp
MYSAGVGRTGTFITVDAMLDMIRAEGKVDVFGFVQQMRQNRSFMVQTEGQ
YVFIFKAILEYYLYGDTETEVSNIHRYMQKLKAEDPQTGKSGIETEFGKL
TRIPVDKANMRSGNLPENLSKNRVLQVLPYDTTRVFLQQKPGVKGADYIN
ASFIDGYNMKDAYIATQGPLDRTVEDFWRMVWEWNSCSIVMLTELKEKSQ
SKCVMYWPEDGSQSFGDFTVSLSDQTDYPDYTLRTLHLMKGQGGSTRTVQ
QFHFHGWPEVGIPDNAAGMIDLIGQVQKQQQHSGNGPITVHCSAGAGRTG
AFCAISTVLERVKAEGVCDVFQVVKTLRMQRPHMVQTLDQYQFCYQAVVE
YLDSFDHYANFR
Run BLAST on NCBI

mRNA from alignment at Sc0000009:4240310..4244415-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96546_cuf0 ID=transcript:BL96546_cuf0|Name=transcript:BL96546_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4106bp|location=Sequence derived from alignment at Sc0000009:4240310..4244415- (Branchiostoma lanceolatum)
ATACAATATGCAGTATGGTAATCTGTGTATCACAATGACCCTCTCCTTCC
AGAGTGAGGGCTAACCAGAGGGCTGTCAGAAGTGTGAAGCAGTATCGTAT
ACTCAACCAAATAACAAACTTTATAGAATAAAGAGTGTAAGTACATATAT
AGAAATTATATGTTTCATGTACAGTGCTGGAGTTGGTCGCACTGGCACTT
TCATCACCGTGGACGCCATGTTGGACATGATCCGTGCCGAAGGGAAAGTG
GACGTGTTCGGGTTCGTGCAGCAGATGCGGCAGAACAGGAGCTTCATGGT
GCAGACAGAGGTAACCTTTTGTCATATCTTGATGAAGGTTAGACATCCAG
GTAGTAAAATACGCCAAAATATTTACTCAAGCAACAGTTGCTTGAGTAAA
TATTTTTGGCGTCCCTTCATATCCCGTTCCTTGCAACTATAGGATAATCC
TATAGCTACATGATGTAATTTGTTCTTCATAGCCTTCACTTTGAATTTTA
GATTGCAGCATCATGTGGCCACTTTGGGACCTAAGCATCCTTATGGAGAA
GGGGGCCCTGCCGGGTAGTTCACGGGTTACTTTTAGCACTTTCCGGAGCC
CGCGATGATTTTAACTCAGACTTAGATTCATCCCGGGACCCTGTAATAGA
TAGACGCCTTGGGCTACACGTGCGAACACCGAGAGGTACCCCCCGGTACT
CAACAGTCCACCGGGACAAATTTGTGGCATCGGGGCCCGGTGGGGGCTAC
ACCCCTACGGGCACCAGCCCAATATTGGGGACATAGCTTTACTCAGGTTC
TTTGGTGTATCTCTTTTTTCTGTTTTTCTGTAGGGTCAGTACGTGTTCAT
CTTCAAGGCCATTCTGGAGTATTACCTGTACGGAGACACAGAGACTGAGG
TGTCCAACATCCACCGCTACATGCAGAAGCTCAAGGCGGAGGATCCACAG
ACTGGCAAAAGTGGAATCGAAACTGAGTTTGGGGTAAATTATCTACACAT
TACTCAAAGATAAAAGCAAATATGTCTTACATTTATCACAGACCATACTA
CATGTTGACATTGCACGTTGACCTACAGGTTTCGAAAATGTTCAGCTTTT
TAGGAATGCACCGTATTCACTTGTGTGAAATCTTCAAAATGTTTCCGCAG
ATATGATCTTTGTATGCATTGTGTACTGATTATATCTAAAACAAAAACAA
GGACAAACACCATTGGTCTCTGATGCCATTCTATTTTCTAATATGTTTCT
CTATTTTGTTTTTAGAAGCTGACCCGTATCCCCGTGGACAAAGCCAACAT
GCGCTCTGGGAACCTGCCTGAGAACCTGTCCAAGAACAGGGTCCTGCAGG
TCCTGCCATGTAAGACACAACTAGGATGTTTAACTTAGCATTGAGTCCCA
GCTGTTTTGCTCTGTTCTGTTCAGCTATTGTATCATTTTGTTCCATGCGT
TACATTACAGATTTGAAAATGATGGTTACTCAAGAGGTTTTCCATAGTAG
GTCTCTCACAACATATATTTTGGATTGGTGGTAATCAAGACTTTTTTATT
CCTGACAGACGACACCACCCGAGTTTTCCTACAGCAGAAGCCAGGTGTGA
AGGGGGCCGACTACATCAACGCTTCCTTCATTGACGTGAGTTATTGCTTC
ACAATATATAAAGTCTCGCTCGTTGGTCGACTTTTCCGCTTTTGTTGCCC
TGAAAAGACAAAGTGGTCTGCTGAACGCTGTCATACGAGTCTTATCACAT
GTAGTTCATTCAAAGAAACAAATGATTTGAATTACATTTATCATTTATCA
TACAGGGCTACAACATGAAGGACGCGTACATCGCCACGCAGGGCCCGCTG
GACCGGACTGTGGAGGACTTCTGGAGGATGGTGTGGGAGTGGAACTCCTG
TTCTATTGTCATGCTGACTGAACTCAAGGAGAAGAGCCAGGTTTGTACAA
CGATTTGGCTTTGAGGACTTGTAAATCTTTGAACGTTAACGCTGGATAAG
AAGATTGGCAATGTAGTGTTTGTGAACTGTGACATTGTGATTTGGATACA
GAAGTTAATGTTACACACATATCAGCCGTTATTGACATGCACTATGTGTT
TTGTAGAGCAAGTGTGTTATGTACTGGCCGGAGGATGGGAGTCAGTCGTT
TGGTGACTTCACCGTATCTCTTTCGGACCAGACTGACTACCCTGATTACA
CCCTGCGTACCCTCCATCTCATGAAGGGACAGGTATGGGATTAGTGCCAA
CAATAATTTGTTAGTGAACATGAGTATAGAAACAAAAAAAGTATTAGAAA
TATCTTTAGGATCAACGATAACGTTTTGGTCAAAACTATGTTATATCCAT
TAGAATTAATCTATGTGAACTACCAATCATGAAGTATAGTCTGCACTAGA
AATACCTGGGTGCAAAATACGTACTAGAATAATATGAGTTTGAACAGCAG
TACTGAACATGTCTTTGGGGCTACGCACATTTTGAACAAGTTTCACTATC
TATATATAGTGACTATAGTCAAGTGTCAGCAATTAGAACTTGGTACAAAC
AAAATGCAAAATGGTGATTCATCTCTTCAACAGGGAGGGTCGACCCGCAC
AGTGCAGCAGTTCCACTTCCACGGCTGGCCGGAAGTCGGTATCCCTGACA
ACGCCGCCGGAATGATTGATCTGATTGGTCAGGTCCAGAAGCAGCAGCAG
CACTCTGGCAACGGACCAATCACCGTGCACTGCAGGTATGATAGTGTGGT
AGTCTGTCGTCACTGGACGAGAATAGAACCCGTCACTCTAGACATTTTGC
TGACCGTGCACCAACTAACCAAGAGCTCATAAGTTTGCCAAGAAGCCTAT
GTTTTTTGGTATGTGTGTAGTTTCTGTGTATGCCTGTGTGTACATGTATG
TGAATAAATGGCATAACTCGAGAAGGCCTGGGTGGATTGTATTGGTGTAA
GGTCCTGTATGTGGTATTAGGTCTTATTTCGAAATGGTTCAACCACAAAG
AAGTACATGCGTGTATGAATGTATCTTACCATGAGCAATGTTCAATTTGT
GAATGTACACTGTAGGTCCAAGGAGCTATCATATTCATTACCTTTCAGCT
TCCCTCTAATGGTAACATTTTCTCTTGCAGTGCCGGGGCCGGTCGCACAG
GGGCGTTCTGTGCCATCAGCACGGTGCTGGAGCGGGTGAAGGCAGAGGGA
GTCTGTGACGTCTTCCAAGTCGTCAAGACGCTCCGGATGCAGAGGCCTCA
CATGGTGCAGACACTGGTGAGTACTACATCTTTTCAGTACCTGAATAAGT
GCGTTGTAAACATCAAAATGTTCTTCAAAGCAACCGTATAATGTACCGTA
TAATAAATCTTGTCCAATACTCATTCTCCTATGGGACAGATACTGGTGGA
CATGCTCACTACTACTAGCACAGTAGAGATAGAGCGTGCATGATGAGGTC
TGTTTGCAGCATATAGAATAGTAATTGCTTTTGATTCTATTCCGTTTGAT
TCGATCAATGTATTCAGCATTTGTACTATCAACTACTCAACCGTGTTGGT
GCCATACATATTGAAATGTTTTCGCTTTGGCCCAACTCCAAAACAACAAT
AGTTACTATTTTTGTGCACTGCGAAGCTAACATCTATTCGATCCATCCAC
CTCAGGACCAGTACCAGTTCTGTTACCAGGCTGTTGTGGAGTACCTGGAC
AGCTTTGACCACTACGCCAACTTCCGCTGAAGAATATGTGGCACCTGGCA
ACTTTTGAGAAGACTCATACGTCAGACAAGAACCGATCATCGAACTAAGA
CTTACTTACAACTGTGTACCGCAATGATATGACACTATGATTATATGCTA
TAAGCTAGCGCTGATAATTGATTATAAGCTATAACTTAGCACTGGCAATT
ATACAGATACAATTATATGCTTTAAGCATTCATAATTTCACAGCTTCAAT
TGATGCAAATATACTTTATTTTCATCAACAATTTCTTGTTTTAACCTTTA
AGGTTTTATTGTAACAATACCATTTTAATCCAGAATTATCCACAATAATC
AAGGTTGTGTGCTTGACAAAGTCACGATACTGTTTTGATCTGAATTGCAC
TTCTGA

Coding sequence (CDS) from alignment at Sc0000009:4240310..4244415-

>transcript:BL96546_cuf0 ID=transcript:BL96546_cuf0|Name=transcript:BL96546_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1089bp|location=Sequence derived from alignment at Sc0000009:4240310..4244415- (Branchiostoma lanceolatum)
ATGTACAGTGCTGGAGTTGGTCGCACTGGCACTTTCATCACCGTGGACGC
CATGTTGGACATGATCCGTGCCGAAGGGAAAGTGGACGTGTTCGGGTTCG
TGCAGCAGATGCGGCAGAACAGGAGCTTCATGGTGCAGACAGAGGGTCAG
TACGTGTTCATCTTCAAGGCCATTCTGGAGTATTACCTGTACGGAGACAC
AGAGACTGAGGTGTCCAACATCCACCGCTACATGCAGAAGCTCAAGGCGG
AGGATCCACAGACTGGCAAAAGTGGAATCGAAACTGAGTTTGGGAAGCTG
ACCCGTATCCCCGTGGACAAAGCCAACATGCGCTCTGGGAACCTGCCTGA
GAACCTGTCCAAGAACAGGGTCCTGCAGGTCCTGCCATACGACACCACCC
GAGTTTTCCTACAGCAGAAGCCAGGTGTGAAGGGGGCCGACTACATCAAC
GCTTCCTTCATTGACGGCTACAACATGAAGGACGCGTACATCGCCACGCA
GGGCCCGCTGGACCGGACTGTGGAGGACTTCTGGAGGATGGTGTGGGAGT
GGAACTCCTGTTCTATTGTCATGCTGACTGAACTCAAGGAGAAGAGCCAG
AGCAAGTGTGTTATGTACTGGCCGGAGGATGGGAGTCAGTCGTTTGGTGA
CTTCACCGTATCTCTTTCGGACCAGACTGACTACCCTGATTACACCCTGC
GTACCCTCCATCTCATGAAGGGACAGGGAGGGTCGACCCGCACAGTGCAG
CAGTTCCACTTCCACGGCTGGCCGGAAGTCGGTATCCCTGACAACGCCGC
CGGAATGATTGATCTGATTGGTCAGGTCCAGAAGCAGCAGCAGCACTCTG
GCAACGGACCAATCACCGTGCACTGCAGTGCCGGGGCCGGTCGCACAGGG
GCGTTCTGTGCCATCAGCACGGTGCTGGAGCGGGTGAAGGCAGAGGGAGT
CTGTGACGTCTTCCAAGTCGTCAAGACGCTCCGGATGCAGAGGCCTCACA
TGGTGCAGACACTGGACCAGTACCAGTTCTGTTACCAGGCTGTTGTGGAG
TACCTGGACAGCTTTGACCACTACGCCAACTTCCGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96546gene:BL96546Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96546_cuf0transcript:BL96546_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96546_cuf0-E1BL96546_cuf0-E1-1564476830-92303Branchiostoma lanceolatumexon
BL96546_cuf0-E2BL96546_cuf0-E2-1564476830-92300Branchiostoma lanceolatumexon
BL96546_cuf0-E3BL96546_cuf0-E3-1564476830-92298Branchiostoma lanceolatumexon
BL96546_cuf0-E4BL96546_cuf0-E4-1564476830-92296Branchiostoma lanceolatumexon
BL96546_cuf0-E5BL96546_cuf0-E5-1564476830-92294Branchiostoma lanceolatumexon
BL96546_cuf0-E6BL96546_cuf0-E6-1564476830-92292Branchiostoma lanceolatumexon
BL96546_cuf0-E7BL96546_cuf0-E7-1564476830-92290Branchiostoma lanceolatumexon
BL96546_cuf0-E8BL96546_cuf0-E8-1564476830-92288Branchiostoma lanceolatumexon
BL96546_cuf0-E9BL96546_cuf0-E9-1564476830-92286Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:4240310..4244415 -
Properties
Property NameValue
Transcript idBL96546_cuf0
Biotypeprotein_coding