|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96570_cuf0 >transcript:BL96570_cuf0-protein ID=transcript:BL96570_cuf0-protein|Name=transcript:BL96570_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=483bp
MDRPGNERHLGADEPKTAAILVEHTPGHAQRPSSKFAALKPFIPFRPKPT
VSVSLFDDVGFFGTIFSSFLTSSVWKAFKSDLTFSDLGSGSPYDSIEVNA
NRLHRIWTEEVDRKGAKDASMLRVFWRFLRTRLIVATSIGLACFMTYFVV
STFFVQWLLQYTAAPNPSLWTGVALVAGMFVLEVTRSFTFRATTLVGARA
SARVIAAIIGMGYHKVMRLQSLKDKTVGELVNLFASDSFRVGGFPNDAGF
LLLVPLMMVPITAYAVYVMGPWALLGIGVAILLVPVEMLLGVKIMQLRKR
CVKIADERVRMTSEMLNSVKLIKMYAWEKPFIRRVEELRARETKLLQFSG
FLQSVMIAMLSTVVPIASVITFSAHVMTGNDLTATQAFTMVSCFHLLSLL
LMLTPELIRQLAECVISAKRLKSLMIMEERDTNGQLPDGKKTAIDIKFAT
FAWDALDVAGKEKRQEENTTVTGTVEEDTEPPT Run BLAST on NCBI mRNA from alignment at Sc0000000:7976532..7984112+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96570_cuf0 ID=transcript:BL96570_cuf0|Name=transcript:BL96570_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7581bp|location=Sequence derived from alignment at Sc0000000:7976532..7984112+ (Branchiostoma lanceolatum)
GTACAGTATCACTACTGTGTTACTATGGTGATATCATATTGCTGACTTAA
AACACCACGGAAATCTCCTTTCCCCTTCTACTGCGAAGTTAGTCAACGCG
AACATAAGTGAATTTTCTCCGGACAGGCATGTGCAACAGAATTTATCTGA
TATACTCATACCAACACCACTGGGGCGTAAAACAGGCACGTTGTTTTGCT
TTCTTCTGTGTCTGTTTGCCTTGCATAACGAAAAAATCGAACCGGAAAAG
ACCCTCAGCCTACTTTTGATTAGTGATGTGCTCGAATTGTGGGTCTCCTC
AAACATGGGACCTCCACATTTACGTCCCATCCTAAAGGACATCCCTAACC
GAAGCTGTACTAATTTTCTTACGTCATTTACTACTAACCAATGAATGCAG
AGTGGGGACTTTGGTGTACAGGGCCTTTCCCAAGGGCACAACATTGCTGG
CGTGCTGAAAATTCGAACCCAGGACGATTAAAATCTAAGTCAAAACCAGA
AGAATGTCCTGATGGGATACCTAGTTCAATTTTTTTCTCAGTGTTAGCAG
CACACTGTAATGTCGTCCTGATTATTATGCAGGGTCATCATGGACCGACC
TGGGAACGAGAGGCACCTGGGAGCTGATGAACCAAAGACGGCCGCCATCT
TGGTCGAACATACGCCAGGACATGCTCAACGACCTTCGTCCAAGTTCGCA
GCATTGAAGCCCTTCATACCTTTTCGCCCAAAGCCGACGTAAGGACGAAT
TAGGTCGAATTAAGTCTTCTCCACGCCTTACTGTATTCAAAGATCTTCAA
TCACCTCTAAAATAAGATATAACAACCACTAGTCAGACTAAGTTCAAAGC
TAGTGCAGTTATCTAATCCAATGAGGTTCTAATCTTATCTAATCTCCGAC
AATCCCTAAGTCTAAATAATTGAACGCTGGGCATCACAGAATATCTGAAA
ATCAGTTTTCTGCACCATTCTCAATTTTCTGTTCTTCTTAATGTTTCCTT
AAATGTGGTCAGCCGCGACTGCCCCATGTAAAATATTGTCACCTTTTTGA
TATGTAATATCATGTGTTTTTGCAGGGTTTCAGTTTCACTGTTTGATGAC
GTTGGCTTCTTCGGGACCATATTTTCCTCCTTCCTGACCAGTTCGGTTTG
GAAGGCCTTCAAGAGTGACCTGACGTTCAGTGACCTCGGCAGCGGGTCCC
CGTACGACAGTATAGAGGTCAATGCAAACAGGTGTGTTCGTGAATAAGCG
CTTTCACACTTCCGCGCGGCGACAGTACGCATGCGCGGCGACAGTACGCA
TGCGCGGCGCCAGGAATAGTGAGTGATATGATAAAGGTGAAGACCCCTGG
GCACTATTATGCAAATCGAGACAATGGTCGAGACGAGAATCCTTACAAGC
CAGGGGCCTTCACCTTTGACATTGTACCCACACTTCTTGTCACCGCGCAT
GCGTACTCGGAAGTTTGAAAGAGCGTAAACAGTTAAACATGTCCATAGTG
ATCACTCAAGGGACTTGACATACAGACTGTTTTATAAGCAATGAATAGAA
TATAGAGGATTCCATTTCTTCAAGAATGATAGTTTCTTTTGCATCTTTAA
TCATTTTGTAGAAAAAAATTGTTTCAGGCAGCCCTAGATATACACGTAAC
TTAGGAAAATAAATGTTTGACTGGTTTGATTCTGAAAGGTTGCACAGGAT
CTGGACGGAAGAGGTCGACAGGAAAGGAGCCAAGGATGCCTCTATGTTGC
GAGTCTTCTGGCGCTTCCTACGCACGCGCCTGATAGTAGCAACATCCATC
GGGCTGGCTTGCTTCATGACATACTTTGTCGTATCGGTAAGCTTGAATGA
ATAGGTCAATGAGGAATGAGAGGTATGGATGATTGATACACCATTCAACG
ATTCACCTACCTCCAAACTACGGGGTAACTAAAGTTTTACACTATAAGGT
CTTGACGCGCAACACTTTGCTGTATACAACAAATTGTCTGAAAGTGTTAA
CTACAAAGTACGGCGATGCTGTGTACCGGTAAGCTTGAATGAATGAGGAA
TAAGAGGTATGGATGATTGATACACCCTTCAACGATTCACCTACCTCCAA
ACTGAAGATTTACACGATCAGGTCTTGACGCGCCACACTTTGTTGTGTAC
AATAAATTGTCTGCAAGCGTTAACAGCACGACCATATTGTGTGTCAAAAG
TGGTGGGAGAAAACAGACTTTTACGATAAAATGGATCTATCTAAAGACGC
AACCAAAATGCATTGTGTTCCACTGACCCCCAAAAGTCAAACCTAATTAC
GTACCTAACGAGTTTAGATTTCAAACATTGCCATGTCCCACACTGAACGT
GTTTGTAGTGCGTACATGCAAGTCCGCATGAGTTGCGTATTAACATTTTT
TTTTGGTTTAGGTAATAATAGTCTGCAGCCGAAAAAGTCCTTTCATTGGT
TCAATAACCAGGCTGCACAACGGTGCGTTAAAGTAGAAAACTTCTTCTCC
GCAAACTTTATTTATACAAAAATGTTAATTCGCACCTCATACACACGTGA
ATATACGCACAAGTGTGATAGGGCCTTTAGGGCAAGGAATTCGCAATAAA
CTTATCACCATAATGATTGTTCCTGTACCTTGCAGACCTTCTTTGTCCAA
TGGCTTCTACAGTACACGGCAGCACCGAACCCATCTCTGTGGACGGGCGT
GGCGTTGGTAGCGGGCATGTTTGTCTTGGAGGTGACCCGTTCCTTCACAT
TCAGGGCAACGACACTTGTGGGGGCACGCGCCAGTGCAAGAGTCATAGCT
GCCATCATCGGCATGGGGTACCACAAAGTCATGCGTCTGCAAAGTCTGAA
GGACAAAACTGTTGGGGAGGTAAGTTTTTGGTGAACAAACATCCGTCATC
ACAGTCCAGTCTAGTAACCCAAAACATGTGAGTGAACCTTGTTTTTGCGG
TGAAATTGAAATAGATAAAATTAAAAACGTTTATGTTATGCTCTTGACAT
TGACGATAGACTGGATCAAAGACTGGATGCTTGGCTACAAGTTTGATCCA
GAAGGGTTAGTGGAAGGTAGCTTGACTGGTATGTTCGATGCTCGGGGCTT
AGTCCAAAGAGATGATTTATACTTCTGAGGTCACTTTTGAGCCTGAGCTG
CTTAATATTCAAATAGCTAAACTAATATGTTGAAGAACCCAACACACTTG
TCGAGAAGAGTAGGGATGACTTGGTGTGCTTGACCAACTTCTTGGTGACA
TCATCATGGGCTCATGCCTCCCCCCATGAGCAAAGACTCTGTGATTCATC
AATGAGGCTCTTTCTTTTGTTTGATGAACTGCATTTGTATTACTTATTAA
TTAATTAATCAATGATTGTTGTATTTTATATATATTTCGACGCAGCTTGT
CAACTTGTTTGCATCGGACTCTTTCCGCGTGGGAGGCTTTCCAAATGACG
CCGGCTTCTTGCTCCTTGTTCCGCTGATGATGGTTCCAATCACCGCGTAC
GCCGTGTACGTCATGGGGCCGTGGGCGCTGCTGGGCATCGGGGTTGCCAT
TCTCCTGGTGCCTGTAGAGGTAAGATTGCTATGATTGAATGGCATGGTAT
GAAAATCACAAAAAATAGACACCATGGCGTATGCCTGTATTAGTGACCCT
TAAGTTAAGACCGTATGATATTATGATATTATGATATTATGATATTATGA
TATTATGATATTATGATATTATGATATTATGATATTATGATATTATGATA
TTATGATATTATGATATTATGATATTATGATATTATGATATCATGATATT
ATGATATTATGATATTATGATATTATGATATCATAATATTATGATATTTA
TGATATTATGATATTATAATATTATGATATTATGATATTATGATAGAATT
TATGATATCATGTATGATAGAATTATATTATGAATTTATGAATTTATGAA
TTTATGAATTTATGAATTTATGAATTTATGAATTTATGAATTTATGATAT
AATGAATTTATATTCTGAATTTATATTATGAATTTATAATATTATAATAT
TATAATATGATATTATGATATTATGATATCATGATATTATGATATTATGA
TATTATGATATTATGATATTATGATATTATGATATCATAATATCTTAATA
TTATAATATCTTAATATTATAATATTATGATATTATGATATTATAATATT
ATAATATTATAATATTATGATATTATGATATTATAATATTATAATATTAT
GATATTATGATATTATGATATAATGATATTATGATATTATGATATTATGA
TATTATCATATTATGATATTATGATATGATAATATTATGATATTATGATA
GAATTTATGATATCATGTATGATAGAATTATATTATGAATTTATGAATTT
ATGAATTTATGAATCTATGAATTTATGAATTTATGAATTTATGAAGATAA
TAAGGACCCTACACTCCCCAGATGCTGTTGGGGGTGAAAATTATGCAGCT
GAGGAAAAGATGCGTGAAGATCGCCGACGAACGAGTGCGCATGACCAGCG
AGATGCTGAACAGTGTCAAGCTCATCAAAATGTACGCCTGGGAGAAACCA
TTCATCCGCAGGGTGGAAGGTGGGCACAAAGTTTCTCTTCTTATAATGCT
GCTGCAACTTTGTACATAGTCTCGATCAGATTTGCTGCAATAGTAGTTAC
AAATGGAGCCAAATAGGCTGAATAATTTGCAGGAGCAGATACTGGCCAAG
GAGTTACTTATCTGACAAATCATTTGGCTACAAACGTTAGTACTAGTGTC
TAGCAACCCAAGAGGTCTTGTAGAGACTAGTCAAAGGGCAAAGAGTCATC
TTGAGACCAAGACCTCCATCTGCATGAAAAACTCATGTATTCCTGCTTTC
ATGTGATCTTTATGATATTTCTTGTGTAAATCTGTCAATGTGTTTTAGGA
CTTATTAGTTGATTCTATGACTTAATGATTCAGTTATTTCAACTATTAGT
TATCAGGCAAGAAAGGGACGATGTATGGACCAAAAAGGTCTCTGTCCCAC
CCTTGCATTTCCTATCTATTTCTTGAAATTGCACTACATGTATGTGCTTC
GATCCTGTGCGAAATATGAAGTACACAAAATATGATTGAGAACGTTGCAT
GCACATTGCAGCGATATCAATCTCAGGGATAAAGATTCATTGGTCCTTTG
GGGAAAGTTGATTCGCATTAGAAATGATTATGCACTCACACAAGTTCAGT
CATTGGCCCATTTGTAAGTTTATAATATNATTAGAAATGATTATGCACTC
ACACAAGTTCAGTCATTGGCCCATTTGTAAGTTAATAATATTCAAATGGC
ATCGGATATAATTTTGACAGCATATAGCTTAAACCAGCGTCAAACTAAGC
AGATCAGAGAGTAATTGATGTTTACTGGTTTTTTCTAGAGCTGCGGGCTA
GAGAGACGAAACTGCTTCAGTTCTCTGGCTTTCTACAGTCAGTTATGATC
GCCATGTTGTCAACTGTTGTGCCGATAGCAAGTGTTATCACGTTTAGTGC
ACACGTCATGACCGGAAATGACCTCACAGCTACACAGGTAATGCCCTCGT
CATTAACTCTCTTATCATTACGTCATTGCATGTCTTCTTTGCATTGTGAT
GTTCGGTTCTAGTTGCGTAATCGTTTACAATTATCATGGTGTTTTTCTCC
CATTCATTTTATTTTCGTTTGGAACATCATACGTCACTTGACTTGTTGAA
ACGAACAATTTTGATTTGACAAATGGCTTCTGTTGTAGGACTGTAAGATG
GTGTCTTATTTCCATGTGTTACCCATCGCTTCTTGTACTTGGAACATTCC
AGTGACAGCTCAGCCTTACATATACACTTTATCTGTAGCCAGACTTAAAA
TCTATTTTAACATAGTATCAGATTACAGGTCATATATAAATATATATAAT
AGAAAAAGATGTACCGCAATGACATGTCGACATATCATAAACCCTGAGTT
GTGAAGCTTTAAAATGGACGTAAGTCGTTTGCTGTGCGGTGTTTTTTTGG
TTATCTGCCAATATTTCTCCATCGACATTACAGTGACGTAGTGTGGAACA
CTGTAATTGTATTAGACCATGTTGACACGTTTTGTTAAACAGACATTTAA
TAGTTCATTGGTCTTGCTCAAGATTAGATTGCATTAACGCATCTTCGCCT
TGAATACTTTACACCAAAAAAAGTTTTTTCAGTCTCAATTTCCTCAACAT
AATCTTGCCAAAATGCCAGCTTTTTTCAAAAGCACTTGTTTTATCTAACA
AGTTTCTGCCGTTGCAGGCCTTTACGATGGTGTCGTGCTTCCATCTGCTG
TCGCTCTTGCTCATGCTGACTCCCGAACTCATCCGCCAGCTGGCGGAATG
TGTCATATCTGCAAAGCGATTGAAGGTCAGGACTACATAAAAGATACTAG
TTTATTGGAGGCATTTGGTATAAGACTGCATTAACAATTGCAAGTTAACA
AATTGATAGTGTACATTGGCAGAAAAAAAGGGCAAAAGTGTCTAAGTCTA
GTGTTAGCATCTAGATGTTCACCATCGTCGTTTCGTCATGGAAGGAGCTT
GACCTCCCGTACAGGAGTGTTGCTAGTAATTGTCTGTGTTTGTGTGTTCG
CACCTATAACCCAAGATCCTTGATTTTGGCATGACGGTAGTTATTGAGGT
CCCAATGATTTTGGGCACCGTATCAGTATTTCCAGGTTCTGAAGAATTAT
AGATCGACAGTTGAGTTTTGACTTATTCTTCGAAAGCAGTGGCTGATACA
TACAAAAAATACTATAGCACAGTAGTGACAGTACCAAATGATTTTGTTGT
CAAAACTTTGACAGAGTCTGATGATCATGGAGGAAAGAGATACGAACGGC
CAGCTGCCCGATGGTAAGAAGACAGCAATCGACATCAAATTCGCCACCTT
CGCATGGGATGCGCTTGACGTGGCCGGGAAAGGTAGGTGGTATCATTAAG
AATCAGACGTCCAACAAGGTTAGACATCCAGGTTATACGACACACAGTAG
AAAAGTAACTCAAGCAACTGGGTAGATTTTGTAAACAGCCAGACGATTTA
AGCAGGTAACGTTACCATCAACTATCTTTCGTCATGATATCAGTCACCAA
AGAAAGGTAGTAGATGCTACCTGAAACTTCTGACTGTTTACAAAATCTAT
CCAGTTGGTTTAGTTACTTTTATTTTGTGCATCATGAATCATATTTCTAC
GTTTTCTCTGTTGTCTTACAGATCGTCGTATGGTATTTAGAAAATAGATG
TTCTACGTATTGGTGTTACGTATAAAAAAAGGTTGACAAACATGCATTGA
AGTTGCAGAGGGTTTATCATGGTGTGCAACGGCAATGCAGGCAGTATAAA
TGTAGTGCAAGACTGGACTATAGAACTCAAAAGAAAAAGATTTCAAAAGT
TACTATGGACAAAACTGTCTGTAAAGAATTTTTTGCGTTTCATCTTCTTC
TTGATCCCTATTCCAGAGAAACGCCAGGAAGAGAACACAACAGTGACGGG
AACGGTTGAAGAGGACACAGAGCCACCAACT Coding sequence (CDS) from alignment at Sc0000000:7976532..7984112+ >transcript:BL96570_cuf0 ID=transcript:BL96570_cuf0|Name=transcript:BL96570_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1449bp|location=Sequence derived from alignment at Sc0000000:7976532..7984112+ (Branchiostoma lanceolatum)
ATGGACCGACCTGGGAACGAGAGGCACCTGGGAGCTGATGAACCAAAGAC
GGCCGCCATCTTGGTCGAACATACGCCAGGACATGCTCAACGACCTTCGT
CCAAGTTCGCAGCATTGAAGCCCTTCATACCTTTTCGCCCAAAGCCGACG
GTTTCAGTTTCACTGTTTGATGACGTTGGCTTCTTCGGGACCATATTTTC
CTCCTTCCTGACCAGTTCGGTTTGGAAGGCCTTCAAGAGTGACCTGACGT
TCAGTGACCTCGGCAGCGGGTCCCCGTACGACAGTATAGAGGTCAATGCA
AACAGGTTGCACAGGATCTGGACGGAAGAGGTCGACAGGAAAGGAGCCAA
GGATGCCTCTATGTTGCGAGTCTTCTGGCGCTTCCTACGCACGCGCCTGA
TAGTAGCAACATCCATCGGGCTGGCTTGCTTCATGACATACTTTGTCGTA
TCGACCTTCTTTGTCCAATGGCTTCTACAGTACACGGCAGCACCGAACCC
ATCTCTGTGGACGGGCGTGGCGTTGGTAGCGGGCATGTTTGTCTTGGAGG
TGACCCGTTCCTTCACATTCAGGGCAACGACACTTGTGGGGGCACGCGCC
AGTGCAAGAGTCATAGCTGCCATCATCGGCATGGGGTACCACAAAGTCAT
GCGTCTGCAAAGTCTGAAGGACAAAACTGTTGGGGAGCTTGTCAACTTGT
TTGCATCGGACTCTTTCCGCGTGGGAGGCTTTCCAAATGACGCCGGCTTC
TTGCTCCTTGTTCCGCTGATGATGGTTCCAATCACCGCGTACGCCGTGTA
CGTCATGGGGCCGTGGGCGCTGCTGGGCATCGGGGTTGCCATTCTCCTGG
TGCCTGTAGAGATGCTGTTGGGGGTGAAAATTATGCAGCTGAGGAAAAGA
TGCGTGAAGATCGCCGACGAACGAGTGCGCATGACCAGCGAGATGCTGAA
CAGTGTCAAGCTCATCAAAATGTACGCCTGGGAGAAACCATTCATCCGCA
GGGTGGAAGAGCTGCGGGCTAGAGAGACGAAACTGCTTCAGTTCTCTGGC
TTTCTACAGTCAGTTATGATCGCCATGTTGTCAACTGTTGTGCCGATAGC
AAGTGTTATCACGTTTAGTGCACACGTCATGACCGGAAATGACCTCACAG
CTACACAGGCCTTTACGATGGTGTCGTGCTTCCATCTGCTGTCGCTCTTG
CTCATGCTGACTCCCGAACTCATCCGCCAGCTGGCGGAATGTGTCATATC
TGCAAAGCGATTGAAGAGTCTGATGATCATGGAGGAAAGAGATACGAACG
GCCAGCTGCCCGATGGTAAGAAGACAGCAATCGACATCAAATTCGCCACC
TTCGCATGGGATGCGCTTGACGTGGCCGGGAAAGAGAAACGCCAGGAAGA
GAACACAACAGTGACGGGAACGGTTGAAGAGGACACAGAGCCACCAACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:7976532..7984112 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96570_cuf0 |
| Biotype | protein_coding |
|
