transcript:BL96579_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96579_cuf3
Unique Nametranscript:BL96579_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96579_cuf3

>transcript:BL96579_cuf3-protein ID=transcript:BL96579_cuf3-protein|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=288bp
MDVNDSVITTVRLVADYVPQNPLSGPFEESWRSMTEHYTEYQIATWGSLF
FHEMTYFLICLPGFLYQFLPFMQKYKIQQSKPETWEAQLQCFKLLMFSHF
FIQMPLMCGTYHFTQWFNIPYDYDSIPPWYVLGLQIFGCFVVEDVWHYFL
HRVLHHKNYYKYVHKVHHNFQAPFGAVAEYAHPVETLVLGTGFFLGILFF
CSHFVQMWVWGLFRLLETIDVHSGYDIPYNPMHLLPCYTGARFHDFHHMN
FNGNYAPTFRWWDKLFGTDWQYKEFCNKQATKDGLKKD
Run BLAST on NCBI

mRNA from alignment at Sc0000000:3305183..3309451+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96579_cuf3 ID=transcript:BL96579_cuf3|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4269bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
TGACCAGTCCTGCTTTGACAGCACTCCCCTATTGTCAGTCTCAATCTGTC
TCTGCGTCCAACATCTTCCCTTAAGGCCCTTAAAACACCGGAAACATGGA
TGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTACGTGC
CGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCATGACT
GAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTTTTTCA
TGAGGTAAGGCCCGTTTTAGGTTTTGCGAAAGTAAGGAGGCGATGCATTT
TACACTAGTCGAATACTACACAGTGATTACTGTAACATGGTGGTTTTTGT
ATGTATGATAATATCTCGGCGCCTTTCTTGCATAAAATCAAAACTAGGTA
GGTCAAGATAAGTCACCTTGTCACATGTACATCTTTTTTCTATCGTATCT
GTTGCCTTGTGCCACCTGCGTGCGATGCATGGCAATTATTGCTGATAATG
GCACCTCGTCCCAAATGTTAGAAGGGAACGCAGGTTTAATCATTTGCGAT
TTGAAGTACATTTGTGTAACGTTTGGGGATTTGGGTCTTGTCACGGTGAT
GGACAGTCAGTTTGGGATTATTGAATCACATTCATAACTTGTGTTCAATA
GTCTTCAGCTATGAATTGATTTTTCTCAAATTATAATGAACGTTTGACAA
TGTTCGTATTGAATCGGAATGGCAAGTTGATTTATGATGCTAGGATTTGA
AGTACTGTGGTCAACCACAGTTGATTTATGATGCTAGGATTTGAAGTATT
GTGGTCAACCACAGTGTTTATTTTACGTAATGTGTATCCAGTTGTGTACA
TAGTCACTAGCGGTTTGGGATCTTTGTACCGTTCTATGGGTCACTTTTGT
ATCGTTCTTCAGATCACTGACCTCATGGCAGAAAACCCAGTAAAACAAAC
TTTACTCTTCTTTAGTGATAAGAATTTGGTCCACTTTTTCCACAGATGAC
CTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCAGTTTCTTCCTTTCA
TGCAGAAATACAAGATTCAGCAGGTAATGTATAAAATAAAACCACTACTA
TCCTAATTATTTACAGAACTGTTGTTGCTTATCCTTACTGTTTGGAATTA
ACAGAGGAAAGATGTTTTGTGTCCTTGTATAACAGTAATGTTCGCACTGT
TTTTTCACGGTATTTTACATTTTTTTAAGCCATGATGGAATCTGTTTAGA
AAGGCATATGATATAAAGTGTACATGAAAGAGTGAGTGAGTGAGAGAGAG
AGAGGGTGGGTGAGAGGAAGAAGAGAGAGAGTGAGAGAAAAAGAGAATGT
GTGTGTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTNTGTGTGTGT
GTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAAACAGCAT
GAGAGAGGGAGGGAAATAGAGGGGAGAGGAAGAGAAAAGATTACTGAAAA
TGATTTCTTTCCCTCCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCTGCA
GTGCTTCAAGCTGCTGATGTTCAGCCACTTCTTCATCCAGATGCCGCTGA
TGTGTGGAACCTACCACTTCACTCAGTGGTTCAACATCCCCTATGACTAC
GACTCTATCCCACCGTGGTAGGCTTTCTTTTTTTGGTAGTGATTCATTTA
CTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACT
CACTCATCCATTCATTTGTTCATGCACCTGCTTCCATCTATTCTTCTACT
CATCCTCCCATCCTCCCACCCATCCATCCATCCATCCATCCATCCATCCA
TCCATCCATGCATCCATCCATCCATCCATCCATCCATTCATTTTCCATAC
AACAGTTAAGTTTTCACTGAAAAGCAGTGCCATGCATTCCACATTCACAA
TCCGTAATTTGTACATAAAAAATCAAACTTTTTAAGACAAAGAATTGATT
CTTATGTAAACACATTTGTTCTCCCAGGTATGTCCTAGGCCTGCAGATAT
TTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTGCACCGAGTT
CTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCACCACAACTT
CCAGGTATGTACGTTGTACTATTAAAACTGCTGTAAATGATCTATTTTTG
TTGGGACTCCATTTCAGAGTAGAAGGGAAAATCAGGTTTTCACAGTGTTT
TAAGGTAAGCTACTAATAGTTGAAATGATTATGCATGCATTCTCAGGGGA
TGACCATTAGTATTGGCATTACTTGATTTTTAGAATTACACATGGAAATA
TTTCACAATAGTCTTAATTTTCTGTACCTGAATAACCCCATCCTCCTTGG
CAGGACTGTACTGTATGGCGGCATAGACTAATGCCTTGTATCGCAAGGCA
TCAAGTGTATGCCGCCGTACAGCCCTCTATAGGAGGATGGAGTGATGCTG
CCATAAAACAGTTTGTCATCTCTTGCTATCGTATAGGCCCCATTTGGAGC
AGTGGCGGAGTATGCCCACCCAGTGGAGACCCTGGGTGAGTGCTGGAAAT
TATTTTTTCTTCACGATAATTCAATGTTGTAATTCGAGTGGGAAAGAGGC
TTTCACAGCGTTTTAAGTTCGCAGCTGAAACATTTCTGTAGTACAGTAGA
AATACATTGGAAACGCATATTTGCAGTGCCATTAATTTGCAGTGAAGAGG
TCACTGCAAATATCTTGTACCTTTTGACTGTCTTTTGAACATAATATGAT
AACCTTATTACCGGGTTGATGAAGAGACAGAGAATTTGTCTCGAAAGCTC
CCCATAGCAATCTTTTTTATGTTGTGTGTAATGCTTAAATGTTTGTCAAA
AGTATAATATAAGTGAATGCACATTTGGTGTCATAAATGTCACATGAAAT
CTATCGCAATCATAACATGAAGAAAAGAACTTCTTAACTTTTTTTACCCT
TTGTACATTTACCCAGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTT
CTTCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGC
TGGAAACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATG
CACCTCCTACCCTGCTATACAGGTAATTATCGTTATAGGAAGGATGTAAT
AAATATGTTTATGACTGTACGTATAATAGAGATATGAATGGATATATGGA
CACCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCGATGCACC
TCCTGCCCTGCTATACAGGTACATGTAATGATTGTTGTAGAAAGGGTGTA
TATATTTACGACTGTAGTCACTGTTCGTACGTATATATGAATGCATGTAT
GGAAGCCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCAATGC
ACCTACTACCATGCTATACAGGTACATGTAATAATTGTTGCAGAAAGGAT
GTATATACTAAAGACTGTAAGAACCAAGGACATTATATAATGTCCTTGTA
AGAACGTATAATAGAATAGATATATGAATGGATGTATGGAAACCATAGAT
GTGCACAGTGGATGCGACATCCCGTACAACACAATGCACCTCCTACTTTG
CTACACAGGTAATTATCGTTATAGGAGGGATATTTATATCTATGACTGAA
TGTATGTATGTAGAGATAGATAGATATGTGGATGGGTGGATAGAGGAATG
GATGAATAAAGCAATGATTGAATAGATAAATGGATAGATAGATGGATGAG
TTGATATATGGATAAAAGGAAAGGATGGATGGATAATATATGCACATGTA
TGTATAAATGATGCCTTGATTTGACTAGAGTGTTATATGACCCCATATAA
AGGACACACACTAGCAATAACATTATGGTACAGTGCCCTAAACACTATAG
TAAGACCACCTGTTTTATCATGCTATTAAACATGCATGATACGTTTTCCA
CCAGGCGCACGCTTCCACGACTTTCACCACATGAACTTCAATGGAAACTA
CGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGGCACCGACTGGCAGT
ACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACGGACTGAAGAAGGAC
TAAGAAAAACCTAAGGAGTTAGGCAGCAAGCAGGCTGCTAAAGATGGACT
GAATGAATGAGGACTAGGA

Coding sequence (CDS) from alignment at Sc0000000:3305183..3309451+

>transcript:BL96579_cuf3 ID=transcript:BL96579_cuf3|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=867bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
ATGGATGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTA
CGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCA
TGACTGAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTT
TTTCATGAGATGACCTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCA
GTTTCTTCCTTTCATGCAGAAATACAAGATTCAGCAGAGCAAGCCTGAGA
CGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGCTGATGTTCAGCCACTTC
TTCATCCAGATGCCGCTGATGTGTGGAACCTACCACTTCACTCAGTGGTT
CAACATCCCCTATGACTACGACTCTATCCCACCGTGGTATGTCCTAGGCC
TGCAGATATTTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTG
CACCGAGTTCTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCA
CCACAACTTCCAGGCCCCATTTGGAGCAGTGGCGGAGTATGCCCACCCAG
TGGAGACCCTGGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTTCTTC
TGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGGA
AACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATGCACC
TCCTACCCTGCTATACAGGCGCACGCTTCCACGACTTTCACCACATGAAC
TTCAATGGAAACTACGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGG
CACCGACTGGCAGTACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACG
GACTGAAGAAGGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96579gene:BL96579Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96579_cuf3transcript:BL96579_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96579_cuf3-E1BL96579_cuf3-E1-1564476830-12656Branchiostoma lanceolatumexon
BL96579_cuf3-E2BL96579_cuf3-E2-1564476830-12658Branchiostoma lanceolatumexon
BL96579_cuf3-E3BL96579_cuf3-E3-1564476830-12660Branchiostoma lanceolatumexon
BL96579_cuf3-E4BL96579_cuf3-E4-1564476830-12662Branchiostoma lanceolatumexon
BL96579_cuf3-E5BL96579_cuf3-E5-1564476830-12664Branchiostoma lanceolatumexon
BL96579_cuf3-E6BL96579_cuf3-E6-1564476830-12666Branchiostoma lanceolatumexon
BL96579_cuf3-E7BL96579_cuf3-E7-1564476830-12669Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3305183..3309451 +
Properties
Property NameValue
Transcript idBL96579_cuf3
Biotypeprotein_coding