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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96581_cuf2 >transcript:BL96581_cuf2-protein ID=transcript:BL96581_cuf2-protein|Name=transcript:BL96581_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=499bp
INPSLWYGLGLVAGLLGVELLRSFSGGIGTAFGMRTGSRLQVALTSMGYA
KVLRLRSLKDKSVGQLVNMFVNDSFRVAMACQQIQMAVLGPVAMIPVLAY
STYIMGPWALLGCFINVLFLPLQVLIGAHIGMLRSQCVKIVDSRVRMTSE
LLNSVKLIKMYAWEKPFTKRIQDLRKREAKLLQKAGFWQAMVVGIGPALM
TVSSIVTFTAHVMTGNDLTPEQAFTVLACFTILRTILMITPFAVRSLSEA
IIATRRMKDLMIMEERKALTTTPSKANIAVEIRGATLGWDAQEKAEEGTS
KEENNDTKDIEEAVGRAQGGDTPLVVEKLFDINLTLFKGTLLGVCGSVGA
GKSSVISAILNDMRLIKGGVAVEGEIAYVAQQAWILNATVKDNILFGEDF
NSIKYDQVIEACCLKPDLEQLPGGDLTEIGERGVNLSGGQKQRISLARAL
YADKDIYLLDDPLSAVDAHVGEHIFRQYIKEGLRGKTVFFVTHQLQVPE Run BLAST on NCBI mRNA from alignment at Sc0000000:8011635..8020009- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96581_cuf2 ID=transcript:BL96581_cuf2|Name=transcript:BL96581_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8375bp|location=Sequence derived from alignment at Sc0000000:8011635..8020009- (Branchiostoma lanceolatum)
CCATCAACCCGTCTCTGTGGTACGGGCTCGGGCTCGTGGCCGGGCTGCTT
GGCGTCGAACTTCTGCGGAGCTTCAGCGGAGGGATCGGCACCGCTTTCGG
CATGCGCACGGGCTCCCGACTGCAGGTGGCGTTGACGAGCATGGGGTACG
CTAAGGTGCTCCGTCTGCGGAGCCTGAAGGACAAGTCCGTGGGACAGGTT
GGTGCTCATCAGTTCTTATTGTCATCGTGTCATTTCATTGATAGTTTTTT
GTCACGTTTCCAAACCGGGCCCCGACCGGACGAAAAGCTGAACGAAAAGC
TGCATATCTACAAAATACACAAATATCATACTTTTCGTTCCTGCAAACTA
CCTGGTCGGGCACAGGTTTGGAATCTAATGGTTCTGGGTTCCAATCTCAA
GCAGATAGATCCTGATGTTTTTCCCTTAATGCGAATTTCCTGACCCGACT
CAGGTGCAACCGAGTACCTTGCTTTGGTTAGGGATATGTTCTCGGAAAGG
GCGCAAAGGTTCCGTATTTGACGACAGCCATGCCTCTAGCGCATCACATG
TGAATGACCCACCATACTTTAACATAAGAGCAGAGGTCCTTCCCAATATG
AGTGGTTTTAACTTGGTATCTCTCTGATAACAAATTTTCAAGCGTGCTTG
TAGCTAAACCATAACATCACATGAGCGAGGTGTAATCTTCTTGAGATAGC
TGAAGCACAAACCAATGTATACGCTTTATGCTACGGTCACAATTGCACCG
TTGCCCGTAGGGGGTGTACACAAAGCCACAAATTTGTCCCAGTCGACTGA
TGGACACCGGAAGGGTACCTCTCGGTTTTCTCTCGATTAGCTCACGGAGC
ATATTTGTTACCGGGTCCCGGGTTGATTTTAACTCCGTGCCCAAAAATAG
CCGGGTAGCCGCAGGGTGCCCCACGGGGCCACCTGGGGGTAACGTCTTTT
TCCAATTGTGACCGTAGCATTACTTGTGTTGGAATAAAAAAAAAGATCAA
GTGACTCATTTTGAGGTTTTCCTTTTGTTCGAACCAGCTGGTGAACATGT
TTGTGAATGATTCCTTCCGGGTGGCGATGGCATGTCAGCAGATTCAAATG
GCAGTCCTCGGGCCGGTCGCGATGATTCCGGTGCTGGCGTACTCCACCTA
CATCATGGGACCGTGGGCGCTGCTGGGCTGCTTCATCAACGTGCTGTTCC
TGCCGCTTCAGGTGATGGTTTTTCTATCATTCCGTATCTCTATCGAAAAG
TATATAGCCTGTATAACCGCCTTTCGGCGTAACACACCAGCTTCGGAGTC
ACTCGGCGCGGCAGCAGCTGGTAAGATCACACTGAAAGACCTGTCACACC
TAATAACCTTTGCACATCTAACTGCAAGCGTTGTTTAAAGCTATCTAGTG
AGGATAGATGCTCTTACTATAGTCAAAGAGTTCCATTCTACGATAGTTAT
AGGAAAATACGAGATTTTAAACATGTCAATCCTAGGTTGATAACTTTGAT
GTTTGAAGGCATAACTATTTCTTGTTCTAGTGTGAGCTGGTATTAGATTC
TTAGTAGTTGGTTCATCTCCCAGCTCATTAACGATTCTAACAAGTTCCCA
GTCACCTTCCGACTTTGTTTCCAACCACTGGCCTGGAATCCATCCTATTC
CAGCTCCAGTTCGTTCTGCCGATCGCATCCAAGCAGAATATGACTTTCAC
GACTTTGATTTTTTTTTAAATATAGCCGGCTGGCGACATAGATGATTTTT
GATAGATGTGACCCAAGCCCTAGCGAAGGTTTATTATGAAATTGGTATTT
TAAAGATAATCTTCTCTCCTGACAAAGTAGGATATAATTATAAAATTACA
GTTGATATTTCTTTTGTTGTAATTTCAGGTGTTAATTGGTGCCCACATCG
GTATGCTACGGAGTCAGTGTGTAAAGATCGTCGACTCCAGAGTGCGCATG
ACCAGCGAGCTTCTCAACAGCGTGAAACTCATTAAGATGTACGCATGGGA
GAAACCATTCACAAAGAGGATCCAGGGTAAGAAACTTGCTCCTGAATACT
TTCGTGAATAGTTTAAACAGGATAGTAAGTCACTCGATAACAAAATATGT
ACACATATGCATTCCAAATTAATGACCTATCCATTTATATATTTATATGC
CTTACGTTTGGGACCCCATTGAAAACATCGCAAGAACTGGACTACCTATG
AGCCCTGTGTTCGAGGACGAGGCTGTAAAGGGCATTACAAAAGCCTCATT
ACGATGGATACCTACTGGCTCTACTTCAGATGAATAGTGATAGTATTCCT
ATTGCTGCAGATCTTCGCAAGAGGGAAGCCAAGCTGCTGCAGAAGGCGGG
GTTCTGGCAGGCCATGGTGGTCGGGATCGGACCGGCCCTCATGACCGTCA
GCAGTATCGTCACGTTCACAGCACACGTCATGACCGGAAACGACCTCACA
CCAGAACAGGTGGGGGGAAATCCGTCTTTACTTTGTTCAGTAATTCGTAT
TTGTGTAACGTTACATTTTGAACCTTTCATCAATGATGTTGAACAGCAAT
CACTGTTTATAGAAACACATTTGGTGCTGCTATAAAGTACAGTTTAGGGG
AACCAGTTTTTTTCAACATGTTTACTGCTTCTGTTGAGTAACGATATAAT
CAGACAGAGGTTCTTCGTGTACTAGCACATTAGCACTTTTTCGTACTGTA
AATTCATTTTTATTATGCGTTTTGACCATACAATTTTAAACAAGTCCATG
ATCTCAACTTATATTTCTAACATCACAAAGCGACGAGAAGAAGCCGAACC
TATGAATTAGAGTAGTTTTAGAACCATTGTTTTAGATTAGTATTAGAACT
CCTGTGTGTCATTTGATGAACATTACCATGTATTTTGTATCTATATGCCT
GTACCTAGCCCGTGATAGGGCATGAATGTACAATAAATTGATACTGTACC
AACAAAGATGGATTCTCTTGACACTATATCTGTTGCACCAGGCTTTTACT
GTGTTGGCCTGCTTCACAATCCTCCGTACGATCCTCATGATCACACCGTT
TGCTGTTCGTTCGCTGTCGGAGGCTATCATAGCCACCAGGAGGATGAAGG
TAAGATTCAGTGTTAAAAGTAGATGGCATACCGAAACATTTAGTGATGTC
CCTGTAGCTCGACTGGTAGCAACCTCACAGTTGAGCTCCTAGTTGCAATT
GGTTGGTAACTGGCTGACTCCGGTTGAGATCTGGGGCATCTCGGTTTGGG
CTGCACCCGTCTTTCGGAAGGGACGTAAAACGTGAGTTCCGTGTTCGAGG
ACGTCGAGCACGTTAAAGAGGCTGTCGTGGGGTAGCAACCCCTTTCTGTA
AAAGTACCCTGCTACAGAAACAGCAAGGGAATTTGTTTACCTATGTGCCA
CTAAACACTACAAGGTGAAGAACAGATACAGTAACATTTACATGGGGAGT
TCTAGTACTATTTTGTGTATTATTTTTAGTACCACTGGAATGTTTCTGGT
ATTTTAGATAGCTGTCAACCACAAGATTGTCCCTTAACAACTTTCATGTT
TTTATAGCGGTAGTAATTGATTTCATTTTGTCTTATCATGGGGTCCACTC
AGACCCCAGTGGTGATTAGAGTAATTTTGGTGAATAACACAGATACGTGG
TTTACAAGCAAATCTTTGTGATGCTTTTTATAAAACCATTAGAAGAGGCA
ACATGTTTTTAACCATCTGCAGGACCTGATGATCATGGAAGAGAGGAAAG
CCTTGACTACAACACCTTCCAAGGCTAACATTGCCGTAGAAATCCGAGGA
GCTNGAAAGCCTTGACCACAACACCTTCCAAGGCTAATATTGCCGTAGAA
ATCCGAGGAGCTACATTAGGCTGGGATGCTCAAGAGAAGGCAGAGGAAGG
TGTGTGGAGGGGCTGTGCTTACGAGGGTGAGTCAATAAGTCTTGCAAGTG
GCTCCATAACAGGCTCATTTTTTCATCAAATGAGTTGAAATTTGGCACAA
ATGTAAAGGCACATATCGTCTTGAGACTGAAATATCTCAGTTTATTGTTT
AAATTTTCATGAGCGACTGAGTTGATTTCAAACTGACCACACCATTGGAA
GTCCGTCAGAGGTAAAGGCAGTGCAAGGGAGGTTCCATTACGGTCTAATT
AAACATTTCCCTGAACCAATTATAGCTATTGTAGGAGACTAAAACTGTTT
TATATAAAAATGCATTTCTCTACAAGACATATGTTTATTTTTTGATCTCT
GAAATGCAATAAAATTTTTTTCTTTTTTCGTTGCTAGAGTGGAGTGAGGT
ATGAGTTGAATTCATAGTGGTTGTCAGGGACCACTTTTCCGTAGTTTAAG
AGAAACGAAACTTAACACAATTTTTGACGTTTAAACTGTTAAGATTTCAG
AGATGAAAATTGGCATGTAATCTAAAGACACATTTATCATTATACACGTG
TAATGTCAGCTTCTTACAGTAGTTGTAAGTGGGTCAGAGAGGAACTGATC
TTGCTTCTGAAGGACTTCCAAGGGTGTGGTCAGCTTGACATCAACTCAGT
CGCTCATGAAAATTTGACAAATAACAAACTGAGATATGTCAGTCTCAAGA
AGATATGTGCTTTTACATTTGTGCCAAATTTCAACTCATTTGATGAAACA
ATGACCCTGTTATGAAGCTACTTGCAAAACGTATTGACTCCCCATCGTCG
AATTAGAATTGAGATAATTCATGACAATGGGAAATATCTATTCTAGTGAA
AAATAGCTTTGTGTTCTGACTCAAATAGCATTACTGTAATATTTATCATG
AATGGTTACAGCATGTGCCTTGAATGCTTGTTGTGATTTCCGTTATCGGA
TCTGTTATCCACTAATTCATTGACACCCTTCTATTGACCATAGGATGGTG
AGATAAACTTCAATGTTGTAAATTATGAATGTATTCTGAGATATATATCT
TAAATGTGCACATGAATAACATGAATTGTAGTGCATTCAAGTCATGTTCT
CAAATCTGACATTAATAGGAACTTCCAAGGAAGAAAATAATGACACAAAA
GACATCGAGGAAGCTGTAGGGCGTGCACAAGGAGGGGATACCCCACTGGT
AGTCGAGAAGCTCTTCGATATCAACCTCACTCTGTTCAAGGTGTGTGTTT
ACCTGTTCTTCGCAATGTCGTTATGCATATATATAGAATATGCCAGATTT
CTTGATTTCTCGAAAGCTTTCGACTGTACCTCCAACGGCCTTCTAGTACA
CAAGCTAAAAATGTATGGAATACATTCCAACCTGCTAGCCCAGTTGTCTC
AGGAGTCCCCCAAGGTTCTATACTTGGGCCGCTCCTATTTCTATTATTCA
TAAACGACCTTTCTTCTGTAGTCAGTAATACAATGGCGTTATATGCAGAT
GACTCTAAATGTTTTAAACATATCTCAACTGTCATTGACTGTATCTCACT
CCATAAAGACTGTGAGAATATGTACAATTGGGGCAAAACATGGATGATGA
AGTTTAATGCAGATTAGACACCTCAGGCTAACTCCAAACTCTTCAACCAA
ACGCTTTAAGCAATCCGTTTCAGAACATCACACATCTCTTCTGACAATAC
ACTTTGACATCAACAACATATGTACATGGACTAACTCCTGTTAATGCTGT
ATAAGGTAGCCAAACCGTCCTTTTTCAATATCTTTGTTGGTACCACCATT
ATTGTCATTTTTTGTCATTATTGTTATTATTGTCATTTCTTGTTTGTATT
GTGATAATATATGAGTGAAGATTCTTTACTTGTTTTTAAATGTACTCTGG
AGGTGTTGGCCTTGTAAAGGATGCATCGATCCTGTTGCCAACACCTCTCA
GATTTCATTCTGTGAAGTTTAATAAATANACCGTCCTTTTTCAATATCTT
TGTTGGTACCACCATTATTGTCATTTTTTGTCATTATTGTTATTATTGTC
ATTTCTTGTTTGTATTGTGATAATATATGAGTGATGATTCTTTACTTGTT
TTTAAATGTACTCTGGAGGTGTTGGCCTTGTAAAGGATGCATCGATCCTG
TTGCCAACACCTTTCAGATTTCATTCTGTGAAGTTTAATAAATAAATAAA
TGCCTCGTCCTATCATGGCGTGTGAAAGTTCTTAAATTTATCTCGATTTT
CTATCCATTTGTGTCATCGTTTCATCATTTGACGATTGGCTTTCACAACT
TTGCTGCATGTAAGAACGTGATACAAAAAACGCAACCTCTGTTCCAGTGC
CAAGAAAAGCCAACAGGGGGGCCAGAATCTGATGATTTCGTTCATAGGTC
AAGATCTAACCACATTCCTGATTTCATCACAAACCACTTGTATCTTTTTG
ACTTATACTATTCAACCACAACAACAAACAGAAGTACAATACCGAAAACA
ATATCTTCCTCGCGAATGCAATTAAGAAAACAAACGATTGATGTTGTTTG
TGTCTCTCCAGGGAACGTTGCTGGGCGTCTGCGGCAGCGTTGGTGCGGGG
AAGAGCTCCGTCATCTCCGCCATCCTTAACGACATGCGGCTGATAAAAGG
GGGCGTGGCTGTGGAGGGGGAGATCGCTTACGTTGCCCAGCAAGCCTGGA
TACTCAACGCCACGGTGAAGGACAACATTCTGTTCGGAGAGGATTTCAAC
TCTATCAAGTAAGTCAAGATTGTGTACATACTACACTATCTTATTTCCTG
TTGACATGCAATCATTGTCTTGTCAGCAGGGATAGATAGATACATACATA
CATAAATGATTGTAATTTCTTACATTATATTGCAGATATGACCAGGTCAT
CGAAGCGTGCTGCCTCAAGCCTGACTTAGAGCAGCTACCCGGGGGAGACC
TTACAGAGGTATTTTTCAGATGCCTGAATTGATGTGGCCATAATCATGCA
TGATGACCAATATTTTCTACAACTTGTAGTTCATACTCATTGGAAAAATT
ATTTTTGCGGTTTCAGTAAAAGTTTCATAATAATCATTATTTGCATCATT
TATTATAGATTGGAGAACGGGGCGTAAACCTGAGTGGTGGGCAGAAACAG
CGCATCAGTCTTGCGCGTGCGCTGTACGCAGATAAGGACATCTACCTGTT
GGACGACCCGCTGAGCGCAGTGGACGCCCATGTTGGCGAGCACATCTTCA
GGTAACGAAACCTCAGCTCAAGGATGTTTGCTTTCTTGTCTTGTCTCCAA
GAATATCTGACAATCAATTTTATTCTAATCCACATAAAAGTAAGTAAAGG
CAGCATCTTTTCGTTACCAGGCATGTTCTCAGAATGTTTGTTATTAACTC
CAATTCACCACAAAACAAGGCTCATTGAGAGCCACTCAGATGTTTGGAGT
TTCACTAACTGGACTGGATCGATGCATGTTCAACTTTGACTTAAAAAGTT
TTAGATTATACCCATCTAGAAAGCAATCACAGGGAAGCTTGTTCCATAAA
AAATAGGTCTAGGAAAGGGTTTGCATACCAGCTTGAAAGTGTCACAGTAG
AATTCATTATAAAGGGGAATCTTAAAGTACAATTTCCAACACAAAGGATT
GGATCAAATTTTCGACCGAGCGACAGCAGTCAAGGAATGAATCTCTGCTC
CTATGACGTAACATTGTGCAGATCGCACACACGTGACTTAGTGAGTCGTG
GATCAGATGTAGCAGGTGATAGTTTGTGACGTCCTCCGTCTCGATTTGAT
TCCTGTGACATGTTTCCTATGTCTTATAGGCAGTACATCAAGGAGGGACT
TCGGGGCAAGACTGTGTTTTTCGTTACTCACCAGCTCCAGGTAAGTTTGC
TATAATACTCATAATTTCGGGAGTCGAATATCTTTCTTCTTTGGGAATGT
CAAAAGTCACACATTTTGAAGATTTGTGTAATTTCAAATCGCTGTCGAAC
TGTCTAATGAACGCCACACTTATGTATTTTTCATTTCATATAAACAAACA
ATAATAACATATTAGAGCTTCTTATAAGCTAAATGTATGATTACAATGTT
TAAACAACAGTTACTATGTAATGTTCGGCAAATTCATGTACTCCACAATC
ACCTGTGAACTTTAACAATGGGAACAATTAATTCAGCCTCGAGATGCGAA
GTCTATTGTAAATGAGTAAACTTCTATTATTGCTATCATGAAATGGTATT
GCATCCCTGTGTACATGGCAAAGGCTGAATTATGCCCATATCAGCCATAC
ACGTACACACAGGAGTGACGTCATCGTCGGAAACGACGGACGGCCTTAAA
GCAAGTATGCAAGCAAACATCGCAGGGGTATTTTAACACTTTTTCTTGTT
TACTTTGCCCTTAGTACCTGAGTGACTGTGATGAGGTGTTGCTCCTGAAA
GACGGGCGGATCGCCGCGAAGGGAC Coding sequence (CDS) from alignment at Sc0000000:8011635..8020009- >transcript:BL96581_cuf2 ID=transcript:BL96581_cuf2|Name=transcript:BL96581_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1500bp|location=Sequence derived from alignment at Sc0000000:8011635..8020009- (Branchiostoma lanceolatum)
ATCAACCCGTCTCTGTGGTACGGGCTCGGGCTCGTGGCCGGGCTGCTTGG
CGTCGAACTTCTGCGGAGCTTCAGCGGAGGGATCGGCACCGCTTTCGGCA
TGCGCACGGGCTCCCGACTGCAGGTGGCGTTGACGAGCATGGGGTACGCT
AAGGTGCTCCGTCTGCGGAGCCTGAAGGACAAGTCCGTGGGACAGCTGGT
GAACATGTTTGTGAATGATTCCTTCCGGGTGGCGATGGCATGTCAGCAGA
TTCAAATGGCAGTCCTCGGGCCGGTCGCGATGATTCCGGTGCTGGCGTAC
TCCACCTACATCATGGGACCGTGGGCGCTGCTGGGCTGCTTCATCAACGT
GCTGTTCCTGCCGCTTCAGGTGTTAATTGGTGCCCACATCGGTATGCTAC
GGAGTCAGTGTGTAAAGATCGTCGACTCCAGAGTGCGCATGACCAGCGAG
CTTCTCAACAGCGTGAAACTCATTAAGATGTACGCATGGGAGAAACCATT
CACAAAGAGGATCCAGGATCTTCGCAAGAGGGAAGCCAAGCTGCTGCAGA
AGGCGGGGTTCTGGCAGGCCATGGTGGTCGGGATCGGACCGGCCCTCATG
ACCGTCAGCAGTATCGTCACGTTCACAGCACACGTCATGACCGGAAACGA
CCTCACACCAGAACAGGCTTTTACTGTGTTGGCCTGCTTCACAATCCTCC
GTACGATCCTCATGATCACACCGTTTGCTGTTCGTTCGCTGTCGGAGGCT
ATCATAGCCACCAGGAGGATGAAGGACCTGATGATCATGGAAGAGAGGAA
AGCCTTGACTACAACACCTTCCAAGGCTAATATTGCCGTAGAAATCCGAG
GAGCTACATTAGGCTGGGATGCTCAAGAGAAGGCAGAGGAAGGAACTTCC
AAGGAAGAAAATAATGACACAAAAGACATCGAGGAAGCTGTAGGGCGTGC
ACAAGGAGGGGATACCCCACTGGTAGTCGAGAAGCTCTTCGATATCAACC
TCACTCTGTTCAAGGGAACGTTGCTGGGCGTCTGCGGCAGCGTTGGTGCG
GGGAAGAGCTCCGTCATCTCCGCCATCCTTAACGACATGCGGCTGATAAA
AGGGGGCGTGGCTGTGGAGGGGGAGATCGCTTACGTTGCCCAGCAAGCCT
GGATACTCAACGCCACGGTGAAGGACAACATTCTGTTCGGAGAGGATTTC
AACTCTATCAAATATGACCAGGTCATCGAAGCGTGCTGCCTCAAGCCTGA
CTTAGAGCAGCTACCCGGGGGAGACCTTACAGAGATTGGAGAACGGGGCG
TAAACCTGAGTGGTGGGCAGAAACAGCGCATCAGTCTTGCGCGTGCGCTG
TACGCAGATAAGGACATCTACCTGTTGGACGACCCGCTGAGCGCAGTGGA
CGCCCATGTTGGCGAGCACATCTTCAGGCAGTACATCAAGGAGGGACTTC
GGGGCAAGACTGTGTTTTTCGTTACTCACCAGCTCCAGGTACCTGAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:8011635..8020009 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96581_cuf2 |
| Biotype | protein_coding |
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