transcript:BL96587_cuf16 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96587_cuf16
Unique Nametranscript:BL96587_cuf16
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96587_cuf16

>transcript:BL96587_cuf16-protein ID=transcript:BL96587_cuf16-protein|Name=transcript:BL96587_cuf16|organism=Branchiostoma lanceolatum|type=polypeptide|length=126bp
RPGKFISIPDNVEQVRCNAVAKLASDKHYKQEPGKFISIPDSIEMERVKT
LQDITSDYYYKEEAKELVERCLSQYPFSVEIDRVHKVSAMQDPRLYREEW
DRDRQNYTVIPDSPEVARVCEVAKMQ
Run BLAST on NCBI

mRNA from alignment at Sc0000000:7611434..7612110-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96587_cuf16 ID=transcript:BL96587_cuf16|Name=transcript:BL96587_cuf16|organism=Branchiostoma lanceolatum|type=mRNA|length=677bp|location=Sequence derived from alignment at Sc0000000:7611434..7612110- (Branchiostoma lanceolatum)
GAGGCCAGGAAAGTTCATCTCCATCCCAGACAATGTTGAGCAGGTCCGCT
GCAACGCTGTGGCCAAGCTCGCCAGTGATGTGAGTAAGATGTTTGGGTTT
CAGTTAAGACAATTTAATGTTACAACATTACTACATACATGCAGAAATAC
ATCCTTTTGAGTGAGTTGCCAGAAATGTGTTTTATATGGTTCACAATCTT
TCAATTTCTCAACAGAAACATTACAAGCAAGAGCCTGGCAAGTTCATCTC
AATCCCAGACTCTATTGAGATGGAGAGGGTGAAGACTCTTCAAGATATCA
CCAGTGACTACTACTACAAGGAGGAAGCCAAGGAGCTTGTGGAGAGATGT
CTGAGCCAATATCCCTTCTCTGTGGAGATCGACAGGGTCCACAAAGTATC
AGCGATGCAAGACCCGGTAAGACATTTGCAAGACAACATCGACTTAGTAG
AATGATCTTGCTTTTACGTTCATTCAATGTTCAAAATTAATGATAAAGAT
TTACCTGGAAGTCTTACCTTTATCAACGTAATTATGATAATATTTCTGCT
TACTTAGTCTCTTCTTTTGTCCACAGCGTCTGTACCGTGAGGAGTGGGAC
AGGGACAGACAGAACTACACGGTTATTCCAGATTCTCCCGAGGTCGCTCG
AGTTTGCGAGGTTGCCAAGATGCAGAG

Coding sequence (CDS) from alignment at Sc0000000:7611434..7612110-

>transcript:BL96587_cuf16 ID=transcript:BL96587_cuf16|Name=transcript:BL96587_cuf16|organism=Branchiostoma lanceolatum|type=CDS|length=378bp|location=Sequence derived from alignment at Sc0000000:7611434..7612110- (Branchiostoma lanceolatum)
AGGCCAGGAAAGTTCATCTCCATCCCAGACAATGTTGAGCAGGTCCGCTG
CAACGCTGTGGCCAAGCTCGCCAGTGATAAACATTACAAGCAAGAGCCTG
GCAAGTTCATCTCAATCCCAGACTCTATTGAGATGGAGAGGGTGAAGACT
CTTCAAGATATCACCAGTGACTACTACTACAAGGAGGAAGCCAAGGAGCT
TGTGGAGAGATGTCTGAGCCAATATCCCTTCTCTGTGGAGATCGACAGGG
TCCACAAAGTATCAGCGATGCAAGACCCGCGTCTGTACCGTGAGGAGTGG
GACAGGGACAGACAGAACTACACGGTTATTCCAGATTCTCCCGAGGTCGC
TCGAGTTTGCGAGGTTGCCAAGATGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96587gene:BL96587Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96587_cuf16transcript:BL96587_cuf16-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96587_cuf16-E1BL96587_cuf16-E1-1564476830-16915Branchiostoma lanceolatumexon
BL96587_cuf16-E2BL96587_cuf16-E2-1564476830-16912Branchiostoma lanceolatumexon
BL96587_cuf16-E3BL96587_cuf16-E3-1564476830-16910Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:7611434..7612110 -
Properties
Property NameValue
Transcript idBL96587_cuf16
Biotypeprotein_coding