transcript:BL96588_cuf18 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96588_cuf18
Unique Nametranscript:BL96588_cuf18
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96588_cuf18

>transcript:BL96588_cuf18-protein ID=transcript:BL96588_cuf18-protein|Name=transcript:BL96588_cuf18|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
AVAKLASDKHYKQEPGKFISIPDSIEMERVKTLEEITSDKYYKEDAEWLV
QRCLSQYPFSVELDRVNKVSMMQDPRLYREEWDRDRQNYTVLADSPEVTR
VCEVAKMQS
Run BLAST on NCBI

mRNA from alignment at Sc0000000:7613565..7614335-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96588_cuf18 ID=transcript:BL96588_cuf18|Name=transcript:BL96588_cuf18|organism=Branchiostoma lanceolatum|type=mRNA|length=771bp|location=Sequence derived from alignment at Sc0000000:7613565..7614335- (Branchiostoma lanceolatum)
TGCCGTGGCCAAGCTTGCTAGTGACGTACGTCCAACATTTGTTTTTAATT
TCATTTTCGCCAGAAAGCACAAAATGCCCATCTTGGATAGAACAACTCTT
AGTACTGGTAACGGCAATCTACATAACTGTAGCTTGCTGACTAAATTATT
TGTTGCTGATGCAACGTTGGGAAAAATTTATGGAAGAAAGAAACTTAAAG
GGAACATTCTTAGAGGACATTCTAAGATGTTCTTAACTTTCTACAAATGC
CTTGATTGACCAGCAAAAGGTTCACATTTCACAGATAACTTCACACAGAA
ACGCTACTAACTAACTATTGCCCTTCATCCAAACAGAAACACTACAAGCA
AGAGCCTGGCAAGTTCATCTCAATCCCAGACTCTATAGAGATGGAGAGAG
TGAAGACTCTTGAGGAAATCACAAGTGACAAATACTACAAGGAGGACGCT
GAGTGGCTTGTGCAGAGATGTCTGAGCCAGTATCCCTTCTCTGTCGAGCT
TGACAGGGTCAACAAAGTGTCAATGATGCAGGATCCGGTAAAAACACTTT
CATAACTAATTGTTTGCTCACTTGATAATTAAGAACAGTGAAGTACATTA
TTTCTGATCTGCTTTAAAGCTAAATATTTGCTCTCTATTCTAAAATGGTT
TGTCTTTTTCCATACAGCGTCTGTACCGTGAGGAGTGGGATAGGGACAGA
CAGAACTACACAGTCCTGGCAGACTCTCCAGAAGTTACCCGAGTTTGTGA
GGTGGCCAAGATGCAGAGCGA

Coding sequence (CDS) from alignment at Sc0000000:7613565..7614335-

>transcript:BL96588_cuf18 ID=transcript:BL96588_cuf18|Name=transcript:BL96588_cuf18|organism=Branchiostoma lanceolatum|type=CDS|length=327bp|location=Sequence derived from alignment at Sc0000000:7613565..7614335- (Branchiostoma lanceolatum)
GCCGTGGCCAAGCTTGCTAGTGACAAACACTACAAGCAAGAGCCTGGCAA
GTTCATCTCAATCCCAGACTCTATAGAGATGGAGAGAGTGAAGACTCTTG
AGGAAATCACAAGTGACAAATACTACAAGGAGGACGCTGAGTGGCTTGTG
CAGAGATGTCTGAGCCAGTATCCCTTCTCTGTCGAGCTTGACAGGGTCAA
CAAAGTGTCAATGATGCAGGATCCGCGTCTGTACCGTGAGGAGTGGGATA
GGGACAGACAGAACTACACAGTCCTGGCAGACTCTCCAGAAGTTACCCGA
GTTTGTGAGGTGGCCAAGATGCAGAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96588gene:BL96588Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96588_cuf18transcript:BL96588_cuf18-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96588_cuf18-E1BL96588_cuf18-E1-1564476830-16926Branchiostoma lanceolatumexon
BL96588_cuf18-E2BL96588_cuf18-E2-1564476830-16923Branchiostoma lanceolatumexon
BL96588_cuf18-E3BL96588_cuf18-E3-1564476830-16921Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:7613565..7614335 -
Properties
Property NameValue
Transcript idBL96588_cuf18
Biotypeprotein_coding