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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96639_cuf2 >transcript:BL96639_cuf2-protein ID=transcript:BL96639_cuf2-protein|Name=transcript:BL96639_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=466bp
VRIMLTLQLLGVVTFFLLFDGVFSQTVCGRLTGASGSFVSPNYPNKYPNG
YDCRWEITVTPPKVVRLTFTEFHVEHDYDFVYVYDGITTDVSNRIAILTE
EILPDPVTSSGSTMTVRFTSDASKNRKGFQANFTAVDVEEFGTYRCADNR
TFIQARKRCDGHVDCKDGSDEGAETCSCQDIPSSLAICQHLEYQQMTLPN
PLNFTHTTVDQVINSARFDDLSTLAHSECHPRVRDIVCAVIIPRCESSPN
LTQLLPCRSWCEEVTYSCSKESSWSAFPSCTIFPNKNCNNIMASTTKDGE
CFDGNGANYRGDQARGPLAGVGCQRWDNDHYYKEVYPWANLEDNKCRNPD
GHSRPWCFTPIGLQFCDVIPCNQKGCKDPGNPRFGKRSPMLKFYWPGDRI
TYSCDVGFKFGENSPPSKARCVIDDATGEPDWETPVPQCKRDYIWHLQHD
LILSSHIYNKEVSPTE Run BLAST on NCBI mRNA from alignment at Sc0000190:33360..41032- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96639_cuf2 ID=transcript:BL96639_cuf2|Name=transcript:BL96639_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=7673bp|location=Sequence derived from alignment at Sc0000190:33360..41032- (Branchiostoma lanceolatum)
GTACGCATCATGTTGACTCTTCAATTACTTGGCGTGGTTACCTTCTTTCT
GCTATTTGATGGCGTCTTCTCCCAAACCGGTGAGTTACCATTATGGTTAT
TATTTTTCATTTCGCTCAACTTTATTGTTCTTCACGGCCGTCAGGTAACA
GGTATGAGTTAAAGAAAATAAGGTCTGATGACACGAAACGTTGCATGTGG
GTACATGTTTTATAAACGCCTTTAAATGCCTTCCTTTTGATTATTATATT
TCAATTTCCCAAACGTACCTTTACGTCATGATAAGCACCATTATGGCCTA
AGCGATTGCTCTTGCCCAAAGTTAGGGTGTATAGATTGATAGAAGGGCCT
TTCTTATTTCTTTTCAGTAGAGTATATAAGTATCAACATCACTCTGTTTT
GGAAAACAATATTCCATGGTTCTGCTATCTCTAACTTTGATACTTGTTAT
AAGTAATAAAGCCGTCTTGCATCTATCTTAGCAATGTGCATCTTATGTCA
CTAGTTTGTGGACGCCTAACGGGTGCCAGCGGATCGTTTGTCAGTCCGAA
CTACCCAAACAAGTACCCGAACGGTTACGACTGTCGATGGGAGATCACTG
TCACTCCACCCAAGGTCGTCAGACTGACCTTCACAGAGTTCCACGTTGAA
CACGACTATGATTTTGTATACGTGTATGACGGAATCACAACTGACGTCTC
AAATCGAATAGGTAAGAAACGCAATTTTAAAAAAGTAAACATTTCTCCGC
CAGCAATATGTACGTGAATTTGTTTTAGTGTTCATATCTTTCCGATGCAG
TTGCAAAACATGTGCCTTGACAAAAATACCGAGGGTAAGGGCCGTAAACG
ACTAGGTAATAGTCAGAATACATATTTAAATGAGTTGAATCCGATAGTGT
TTAATGCTAATCTAAAGGTTTTGAATGGAGTTTAAACTGTAAATGCCAAC
ACAAAAATTTGACTTACCCAAATTTTCTACTGATCAGCTCCAGTCTTTGT
CAAGGAGTGAGCAATCCACTGCTTTTGTGACGTCACGTTATGCAGATGAG
GCACGTGACTCGGAGAGCAGTGGATCATAGGTTGCAGAAAGTCTATGGCG
CCCTCCGTCTCTGTTGAGGGATGGTTCTAAAGCTGTACTTTTCCATAACA
CTACTACTTAAGATGGATTAGATAGGGTCAGTGTAGAAGTCTTGGTGTCG
TCTTTGATGCAAATATGCTATACTGGTGCTTTTTTGCGACACCTCCATTG
TGGAAGCGTTTTTCAAAGAGTTAACATTTCCTGGACATATTGCAAAATCG
CCCGAATGCATCTAGAGTAATGACTTTGATAAGCTTCAATAGCTTAAGAA
GCTGTGGATAGATCTGTGCTTTGTTCTTTTTTGTCTGTTTGTAGATTGCA
GCAAAACACTGAGCATGTGAGATGTCTGTCTTAACTCGATTTAGCGCCAT
CTGGTGGCATTCACATGTACTACAGCAAATTTCTGATTCTGATGGATAGT
GCTCAGGTTTTAGAAGAAGTGGTAAAATTTGTACTCCCTAACATTAACTT
AAAGGAACTGCAGGGGCCTTTTTGTTAAAGACCTTTGTTAACGACATGCT
TAGTTTGTAAATAGCATATAGAATATAGCACCGCTGTCTGTTGTGCCATG
TCTCTGATCTATTTTTATTCAACAGCAATACTGACTGAGGAAATCCTCCC
CGATCCTGTGACGTCATCGGGGAGCACCATGACTGTCAGATTCACATCCG
ACGCATCAAAGAACAGGAAAGGCTTTCAAGCAAACTTCACAGCCGTGGAT
GTGGAAGGTGCGTACAATTAAACCAACCATAGAAACCACATGAAACACAG
TTTGATTATAAAAAACCAAACTGACTACAAATCTTTTCAAATTAAAGAGG
AAGTATGAACTATATGGTTTCTTAGACTACCAAGTATACACCACAATTAC
ATGAATAAGGCATATTTCTAGACACGCAGCTATCAACTGAACGCTAAAAG
GGAAATATAGATACCATTCCAACTTTGTAGGTTTTTTTGACACTTGAAAA
CACAATGTTATGGTTTTCAAGTGAAAGTTGCCTAGTAACGTTACGTATTG
TATTGATTACGTAGCTTTCTTACACCTGTCACTTTTCTTTGTCTAACAAC
GTTTTCTTCAAAAACTAGTGAGAACATTTTTCAAACTTGAGACATCAGTT
AATATGCAAATGATTTCCCGTCGTCTGCTCTGATCCCATTCTACTGTTAT
TGGAGCCAGGCGGGTAGAGATCCCCTACAGAGGATAATCCATTTATGATG
TTGGGATGACGGTTGGAGTCAATTTAGCTACTAACTCCCTGACAAAACTT
AGTTTTTATAGGAGGAGGACCCATGGTCCTCCCAGTCTGTTTTTAAGCAT
TCATGGTTAATGACCGTCCCCGATGCGTTATGTTACCGTAAGCATTGGGA
AAAAGGTTATTCTCATATAGCCAAACCAAAATCACAGAAACATTTTTAAT
AGATGGAGTTCACATTATTGGACGATGATCAATGCAATTCTTCATCAACC
CATGTTTATGAAATGATTGCTGGACTACCAATAGGAATGGAGGTTTGTGT
TTGGTTCACGCAGCGTGGCTATAAGCCTATTATGATGATATTTTATTGAT
ATTGACATGCTTTTTTGCATGATTTATAACTTGTGATGCCCAATTCAGCA
TAATACGTGTCAATTATGAAAATCCCATCATCTACCACCAGGGAATTGCA
GGAATTTGTCCTTATTCCTTGCAATAAAGTTACTACCATAATTGTTTTAT
TGCACCTACTGCCCTAGACATGTGTTGTTATGTACAAGTGATAACTATCG
CTTTTATACACTAAGATCTTATCCTGTAACGTTTTTTAGCTGTTTTTTAG
CTGTTTGATTTTTTACATTGCAAATGCAAACTCGTAATAGCAACTATTAG
TAAGTAAAATGTTGATCAAACTTAAGCACAACTGATGACGTATTTGATTC
CCAGAGTTCGGTACTTATCGGTGTGCCGACAACAGGACCTTCATACAAGC
TCGGAAACGGTGCGACGGGCATGTCGATTGCAAAGACGGCAGTGATGAGG
GTGCAGAAACCTGTTGTGAGTACCCAACCTTACAGTTTGATTTGATTTAT
ATTGATTTATCTAAGCTGTGTAATGCTTTGGTCCTAAGTTGTGCTGGTTC
CCGTCGGGGGTGTTTTCCCGGCCGGGCCCCTGAGTCACAAATTTGTCCCG
GTGGACTGCCGGGTATCGGGGGTACACCTCCCGGTGCTCGCACGATTAGG
TCACGGCCGCTACGTGTTACCGAGTCCCGCGTTCAATTTAAGTCTGACTT
AAATTCATTCGGGATCCCGGCCGGTTCCAAAAATAACCCGACAGCCGCAG
TGTGTCGCACGGGACCACGTAGGAGCCATGCACGATGGTGCCCAAAACAG
CACGTGAACGGTGGGGCCCTTTTTCCAATTGGACGGAAGCATCACACATA
CACAACAAGCCAAAGCGCTAGGCCTGCTGACTGAACAGTATATGTAATGT
ACAGTTAATAAGTACATTTAGTTGGCACAAAAAGGCGTTTACAAAGCACA
AGACTCGGGTACTGATATACATAATAGTTTTTACGTACTAGGTGATACAG
ACCATGAAAAGAGGAGACGACCTGGGTTAGTAGCATAACAGTCCTGATAT
CTTTGATAGAAAGCAACGTAAGAAATATTTAGAAGCTGTCTAGTATGGCC
ACTATGTATGTACTCTAAGTACAGCATTAGGACAGGCCGTTCAGTACGCA
CAGAGTGTTTGGTACTGTTAATGACTGACCAAGGTTCAATGACTGACATT
TGTGATTAGCAACTTGCTCTTACATATATTTGAATCAAAAGTGGGCAGTA
GAACTTTAATCTATACATTTATGAATGTCTTTCTAGCTTGTCAAGATATT
CCATCATCTCTGGCGATTTGTCAGCACCTAGAGTACCAACAAATGACACT
CCCCAATCCCCTCAACTTCACGCACACTACGGTAGACCAGGTCATCAACT
CAGCAAGATTTGACGACCTCAGCACCCTCGCACACTCCGAGTGTCATCCC
CGTGTTAGAGACATAGTCTGCGCCGTTATTATACCGCGATGCGAGTCCAG
GTACATTATTACAATTTCCCATCTAAATATATGAGTAATGTATTTTTCTA
GGAGTTGCGAAAATGAAGGACGATGGCGCCGCAGCCAAGGTGCTATAATG
TGTTGAAAATCGTTTTTGCTGAGTAATCAATTTAGAACCGGGTACTCCGA
GATCCTCTGATTGGCTAATCTTGATAGTGGAAATTAAAATATTGAATGCT
TATGAAACAACTAGCCAATGGAAAGCGATTAAAGATTACAAAGGGAACTT
TCTTGTCAGTTGGAGAAGGTACTATATTGATATGAATTATGTATCTCCAC
TTTGGTCTATTTCAAAGGCTACAGAAGTTAGCGTTTTTTACATTAGATGG
GAATAACTTGAAATTGAATACATATTGCAATTATTAGGGACGTCTTCTTA
ATTTATGAATGAATAAATGAAGACCTCTATTGTACACCTATACCCACTGG
GTTCAGTACAGGTCATAACAGAGTATGTTACAGTTTACAAATAGATATAT
ACAATGATAAGCTAGCACTAGTCTAATGATTACATGGATTTGGCTTCTTA
GTAATGGTGTAAATATAAATGATATGCTTTGTGGTCATCTGCTGTTTTTG
TATAGTCCGAACCTCACACAACTTCTGCCCTGTCGGTCGTGGTGTGAAGA
AGTGACATACTCCTGTAGTAAAGAGTCTTCTTGGTCAGCGTTCCCCAGCT
GCACAATTTTCCCAAACAAAAACTGTAACAACATCATGGCCTCAACGACT
AAGGACGGTGGTAAGTCTACATTTATGTCAACTATGGCAATCAGCAAATG
CTCACCTCCACAATATTTTTCACTCTTAAGGAGACATTTCTTTTAAAGAA
ATATATTCTTCAGTTAAAGCTCATTATTCTTCTCGTCCTCTTGTCAATCT
GGTTATTTAGATACATTCGCGTGCATGTATCTGTGTTCTGTAAACGTATA
TATAGAGAGGTGTTTTGGACATATGCCCATAAGATGTCATTAATGTTTTG
TGTTAAACATGACTTCAAAATAAGTTATTTCCGATGATTGGCCTTTTTTT
TTACCAGAAATGAACATTTTGGGTTCCAGCGCATTGGTATGTAAACCAAA
TGATCTGATAGTACTACTTCACTTAAGCGTAAACCACTTGGCAAACGTTT
CAGAATTTTTTTGAGACGTTGGTAACTCTCAAACATTTCTTTAGACTTAA
TTAAAAGAATTATTATTTCTTCCTGGATGACTAATCTTCATAAATGTGGC
CTGAAACTTGGTAAGTCGAGGGATGGCACTGAGTTGTTTTTCAATATCAC
CTCTCAAGTCTTTTCCTGTTTTACTCGTACACTAGAGTGCTTTGATGGAA
ATGGTGCGAACTATAGAGGGGACCAGGCCAGAGGTCCTCTAGCTGGGGTG
GGCTGTCAGCGATGGGACAATGATCACTACTACAAAGAGGTGTACCCCTG
GGCAAACCTTGAGGACAACAAATGTCGCAACCCTGATGGCCACTCCAGAC
CATGGTGCTTCACACCGATTGGACTCCAGTTCTGTGACGTCATTCCCTGC
AACCGTAAGTTACCAAGTCTTCTCTGTTGAAGATATGCTGTTTTTATGCG
CCTGTTTATCAAGCCGTTTGTGCTACCGCATTTAGGTTCACGTGTTGGGC
ATGTCTCATCGCAGCTTGAAGAAAACGTCAAATTAGTAACCACAAGTAGT
AAAATAAACATTCTTTTGTGTAATGAGGGGAAATTGTAAAAGTTTGTACA
CCGAGCACACAAACAAGCAGGGCATAAATTCATTTCTCAATTATATAAGT
TATATCTATATCTAAAATATCAATATCCTGTTATTATTTGACAATGCGAT
GGACCCCCTTCCGGCATCAATATGATTTCGGTATATGGTTAAAACTTGGT
GACGACTGTACACGAATTTCATAAAGATCATCAAAATGGTATAAAAGCAA
CACGGACTACATTCTAGGACCGATACCTTTGAAATTCACCATGTTGTATC
ATTACAGCCAGGCGGTACCTATCTGAGTAATGAGGCTGTTGTTACCAACA
ATAACGTGCTCGCGGCACCTCCTCAAAACGGGACCCACTACGATGTTTAA
GTCGCTTCCGAAAGACAGTGCAGCTCCAACTAGAATACTCTTCCAGATTC
GAACCAGGGTCTCCCAGTTATGCCTCGGTCCCATTTCCAATCTAGAGCAT
GGACAGGCTGTTTGCGAAAACGAGAAATAAAAATGCATATCAAGAAAATA
CACAATGTATGGTCAGGAGTAATATTTCTATGTTTTGTGTATTTTGAAGT
CTTTTGTATCAAATTTGTCGTTCCCACAAGCTGCCCGTCCGCGCCTCGGA
TTGGAAATGGGACCGAAGGATTACCAACTATATGTTTTTCATTTGTGGTT
GTTTTAGAAAAAGGGTGCAAAGATCCGGGAAACCCCCGCTTCGGAAAAAG
GAGCCCCATGCTTAAGTTCTACTGGCCTGGCGACAGAATCACGTACAGCT
GTGATGTGGGATTCAAGTTCGGGGAAAACTCACCACCCAGCAAAGCCCGA
TGTGTTATCGATGATGCAACCGGAGAGCCCGACTGGGAGACACCAGTGCC
TCAGTGTAAACGTAAGTATCTCAATTCATCGCAGATATATCACAGCACCG
TGGACGCTTCAAAATATAGGATAAACGTTTACAGACATTCGCCTTTCTTT
CCACATTTAGTTATTATTCATGGGAAGGCAATCCGTGAAGTATGTAAATA
AATACATACTTTTGTGTCATCGGTAAGTAAATCAAAATATATACTCCTAA
ATTAAATATTACGATAAAATTATTGTATTTTTCTTGGTGTGTGTTTGGAG
TTGCAGAATACCTTTCGAAAGACACATACAATGTACTTTATTTACGTCAC
TAAAGCTTGTATATCAAGTATCTACGTCGAGTCCACGAAAACGGCAATAT
AAATTTGACATAGATTAGCTCATCTTTCAGTCTAAAGAATAGAAGACCTG
ATGCAAATATAAACCATAGAGCCAATGATAGATGATACAGATTAAAATAG
AAAAGACATAATAGCTAGCATACTTCAACTAAAGTATTTTAAGCGTTGAT
GAAAGTTAGACATCCAGGTATTAAGATAAGCCATCTGCTGTCTGTCGCCA
GTGACTAAAGATAGGACTGGAAAGCCAGTAGCTAATTGAACTATTAGCAT
ACAACTTAGTTTGTTCTCTATTGGATGGCTTTAGTATAAATCTGGTTTTC
CAGTCTTATCCTTAGTCACTGACAACGGATACTGTCTGAAACGCCTGACA
GTTTTAAAATTTTATCTGCTGTCTGAAAAACTATGTTGGTGTAATTCGTT
TTGAGTTTGAGGTTTAATGTTTAGAATGTTTATGTTAATCCTCCTTATAA
AAGTAAAGATGATGATGATCATGATTATGATGCTCTTTGTTACAGGCGAT
TATATATGGCATCTACAACATGATCTTATTCTGAGCTCTCATATCTACAA
TAAAGAAGTGTCCCCGACAGAAA Coding sequence (CDS) from alignment at Sc0000190:33360..41032- >transcript:BL96639_cuf2 ID=transcript:BL96639_cuf2|Name=transcript:BL96639_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1398bp|location=Sequence derived from alignment at Sc0000190:33360..41032- (Branchiostoma lanceolatum)
GTACGCATCATGTTGACTCTTCAATTACTTGGCGTGGTTACCTTCTTTCT
GCTATTTGATGGCGTCTTCTCCCAAACCGTTTGTGGACGCCTAACGGGTG
CCAGCGGATCGTTTGTCAGTCCGAACTACCCAAACAAGTACCCGAACGGT
TACGACTGTCGATGGGAGATCACTGTCACTCCACCCAAGGTCGTCAGACT
GACCTTCACAGAGTTCCACGTTGAACACGACTATGATTTTGTATACGTGT
ATGACGGAATCACAACTGACGTCTCAAATCGAATAGCAATACTGACTGAG
GAAATCCTCCCCGATCCTGTGACGTCATCGGGGAGCACCATGACTGTCAG
ATTCACATCCGACGCATCAAAGAACAGGAAAGGCTTTCAAGCAAACTTCA
CAGCCGTGGATGTGGAAGAGTTCGGTACTTATCGGTGTGCCGACAACAGG
ACCTTCATACAAGCTCGGAAACGGTGCGACGGGCATGTCGATTGCAAAGA
CGGCAGTGATGAGGGTGCAGAAACCTGTTCTTGTCAAGATATTCCATCAT
CTCTGGCGATTTGTCAGCACCTAGAGTACCAACAAATGACACTCCCCAAT
CCCCTCAACTTCACGCACACTACGGTAGACCAGGTCATCAACTCAGCAAG
ATTTGACGACCTCAGCACCCTCGCACACTCCGAGTGTCATCCCCGTGTTA
GAGACATAGTCTGCGCCGTTATTATACCGCGATGCGAGTCCAGTCCGAAC
CTCACACAACTTCTGCCCTGTCGGTCGTGGTGTGAAGAAGTGACATACTC
CTGTAGTAAAGAGTCTTCTTGGTCAGCGTTCCCCAGCTGCACAATTTTCC
CAAACAAAAACTGTAACAACATCATGGCCTCAACGACTAAGGACGGTGAG
TGCTTTGATGGAAATGGTGCGAACTATAGAGGGGACCAGGCCAGAGGTCC
TCTAGCTGGGGTGGGCTGTCAGCGATGGGACAATGATCACTACTACAAAG
AGGTGTACCCCTGGGCAAACCTTGAGGACAACAAATGTCGCAACCCTGAT
GGCCACTCCAGACCATGGTGCTTCACACCGATTGGACTCCAGTTCTGTGA
CGTCATTCCCTGCAACCAAAAAGGGTGCAAAGATCCGGGAAACCCCCGCT
TCGGAAAAAGGAGCCCCATGCTTAAGTTCTACTGGCCTGGCGACAGAATC
ACGTACAGCTGTGATGTGGGATTCAAGTTCGGGGAAAACTCACCACCCAG
CAAAGCCCGATGTGTTATCGATGATGCAACCGGAGAGCCCGACTGGGAGA
CACCAGTGCCTCAGTGTAAACGCGATTATATATGGCATCTACAACATGAT
CTTATTCTGAGCTCTCATATCTACAATAAAGAAGTGTCCCCGACAGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000190 | genome | Sc0000190:33360..41032 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96639_cuf2 |
| Biotype | protein_coding |
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