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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96659_cuf20 >transcript:BL96659_cuf20-protein ID=transcript:BL96659_cuf20-protein|Name=transcript:BL96659_cuf20|organism=Branchiostoma lanceolatum|type=polypeptide|length=594bp
ATCIDCPAGHYCLQGSDQYEDKPCPPGHFCPAGTATATENPCPAGSYYNL
TLARAQDDCLPCPGGEYCATPGLDYPTGLCQEGWYCSGNSTSATPTLNGG
ECQPGYYCPEGSSSPQLCSPGMYCQTTGLLLPTGNCTAGKHCQTTGLPLP
TGNCTASYYCTLGAQFPNPVDNSTGDLCPEGHYCPTGSAAPLPCPTGTFL
NSQQNDEEADCLACPLGEHCPGVGRPLSAGDCDPGYYCPGGQNVSQPADY
GCPIGHYCESGAHTPVRCENGTFQDEELQSSCKTCPSGYFCDNTVTYVVL
DNTTTICPMGYYCPEGTRYANEFPCPIGTFNNRTGLRESSQCSRCLGGHY
CPMVGLVSPYDQCDAGYFCQEGAETSTPNQGSDADICPEGYFCPLGTANP
SACPKGTYSNTTGLQEEGDCTLCPAGEYCGEVAMTNTSGLCDAGYFCELG
SSHARNISCPSGHYCPQGSGSPTPCPRGTYSTAPNNQNSTQCDACDPGTF
CNQTGLSNPSGECDPGFYCPGGDDVPTPGDTPCPIGLHCPRGSPSPVPCA
PGTFTNLTQTWECLTCPAGFYCVPEEVIEGNSSSGYRLCPRGYY Run BLAST on NCBI mRNA from alignment at Sc0000005:7296383..7302164+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96659_cuf20 ID=transcript:BL96659_cuf20|Name=transcript:BL96659_cuf20|organism=Branchiostoma lanceolatum|type=mRNA|length=5782bp|location=Sequence derived from alignment at Sc0000005:7296383..7302164+ (Branchiostoma lanceolatum)
GCTACTTGCATCGACTGTCCAGCAGGACACTACTGTCTGCAGGGTACGTC
ATGTCAAGTGGTTTCCTTCTTGTGTTTTTACCTTCGCTTAGAAGGTTGTG
TTTTGGTTTTGCTGTAGTGGAGTGGCTGTGGATGTATGTGTGTATAACTC
AAGAAGCCGTGGATGGATCGTTATGGTATTTGATAGATGGGTTGTTGGTG
GAAAAATGAAGGTCAAGATCAATTTCCAAAAGGGTAAACCACAGACTGAG
ATTTCTTCCCCAAGGTACCTTGTTCTATCATTGTTTGGTGTTTCATCTTA
ATGGGTAATTGTCGTATTTGGGATGTAAAATCCAATGTCCCTAATATTTG
TATTTGTATTTATTAGCATTATGTCTCAGACAAGTCTTTTAGACTGGGTC
AGCCAAGGCAGCTGTCACTGGTAACGGCTGACCCACAGAATACAGACAAA
CTTAACACAGCGTGTGACTTAACCTGATACATAACCTACAAAGAATACAA
TATTCATAACAATATACATTAGAGACGATACATAGTAATACAGTACACAA
TAATCATAAGAATCAATGACAATATTTCCCCAGGTTCAGACCAGTATGAG
GACAAGCCCTGCCCTCCCGGCCACTTCTGTCCCGCGGGGACGGCCACAGC
GACAGAGAACCCGTGCCCCGCCGGCTCCTACTACAACCTGACCCTGGCGA
GGGCCCAGGACGACTGCCTCCCCTGCCCCGGGGGAGAGTACTGCGCAACC
CCGGGGCTGGACTACCCCACTGGCCTCTGTCAGGAGGGTGAGTTCATTTC
AAGATTTTGTGATGTTCACCTTGCTATATTATATCTTGTTGAATTATTAC
AACCAGTAGGTACCCATCTGAGTAATGAGGCTGTTGTAATGTGCCCGATG
CACCTCCTTGAACTCATGACCCCTATTTTACGTCCCTTCCAACAGGCTAC
CCTTCCCTGAATTCAAACCGTGGTCTCCCTTTGAAAACAATTAGTTCATA
TCTTCACCTTTGTAAGAAACATACCACTAGTACATAGGTGTTGATTTTGT
AAGAAAATCTAAGTCCCTGACATCCCCTGCAGGCTGGTACTGTTCCGGTA
ACTCCACATCAGCAACCCCCACTCTGAACGGAGGCGAGTGCCAGCCGGGG
TACTACTGTCCCGAGGGCTCGTCATCTCCTCAACTCTGCAGCCCTGGCAT
GTACTGTCAAACAACAGGGCTCCTTCTACCCACTGGAAACTGTACTGCAG
GTAAGCACTGTCAAACAACAGGGCTCCCTCTACCCACTGGCAACTGTACT
GCAAGTAAGTACTGTCAAACACCAGGGCTCCCTCTACCCACTGCCAATTG
TACTGTAGTTGTATATTCTAGATCAAGAATTGGAATATCCAGTTTGGCAA
CTATGAAGAGCTCAGTTCTGTTTATCATTCTAGTATTGGAGAATGATGGC
ATATGATTTTCTCTGGCAAATAACTACTGGATAAACATTTCTCAATTTCT
GAATGTGTCCTAATAGTACATGTGTCTTATAGGTTACTATTGCACCCTGG
GAGCGCAGTTCCCCAACCCTGTGGACAACTCCACCGGTGACCTCTGTCCT
GAAGGTCACTACTGTCCGACCGGCAGCGCTGCCCCCCTCCCCTGCCCCAC
CGGAACCTTCCTCAACTCCCAGCAGAACGACGAGGAGGCGGACTGTCTGG
CCTGTCCCCTGGGGGAGCACTGCCCGGGGGTGGGGAGGCCGCTGTCCGCA
GGAGACTGCGACCCAGGCTACTACTGCCCCGGGGGTCAGAACGTCTCACA
GCCTGCTGACTACGGGTGGGTGCAGGTTTAGTGGAATGTCTTTGACTAAA
GAAATGTGTCTCTGTCTAATGGTTGCCAACTGCTCCATGTTTATAATTTC
TGTTGCGAAACACGGTCTAATACTGACAGATATGTTTTGTAGATACGAAA
AAGTCTTTTAATGCTCTGGAATACGTTTTTCTGTGTTGATTTGATCACTG
TCATATTTATCTCCTTGTATATTCCTTAAAAGCAAAAAGGAAAAGCATGA
CACACAAGTCCTTAAATGTGGCTAATCTTACTAAGCAGTGTTAGGTACAT
TCTGTAAAAACTTTGACCACCTAAAATGTTACTTACCAAGAGTTTTATCT
GGTTTTGTTAACTGTTTAGAATATTTTTATCTGGAAATATGCTGATTGAA
AACTGTTTTCCCTCCAGCTGTCCTATTGGCCACTACTGTGAGTCGGGAGC
GCACACCCCCGTCAGGTGTGAGAATGGAACGTTCCAAGACGAGGAACTTC
AGAGCTCCTGCAAGACGTGCCCATCAGGCTACTTCTGCGACAACACCGTC
ACCTATGTGGTCTTGGACAATACCACTACCATCTGTCCCATGGGGTACTA
CTGTCCCGAGGGAACAAGATATGCAAATGAATTCCCCTGTCCAATCGGAA
CCTTCAACAACAGGTAACAGCAGTTACTGTAGTTATACATTAGAAATGCA
AGGTTCTTTATTCACAACCAAGACAACCATATATCACAGTCAACACTGAA
CCTTGTTGTCCAGTAATTTTTCAATCTAATGAAATCATTCATTTTTAAAT
TAATAGACATGATATACTTACGCTAACATTCAGCGATATCCACTAGACTA
TGATTTTGAAAACAAGACAGTTATTTCTAAAGTGGTCAAAGTATTGGGCA
TTATGTCATGCCTGGGCCTGATACGGGTGTTCCGGACCGTGTGATAACTA
TCCGGATCACATAGGGTTCGGGAGGGTTATCACACAGGCTTCCATAGAAT
ATTTCGAACGCATTTCGAACGCGTCGGTTGCGCGGCCGTCGGAAATTCGA
ATACCGGATTCGGAGATTGGAATCAATGTTGCTACAGTTTCTTGTTCGAG
GACACAAAACTCCCTCAACTTCTGGCGCATTCCGCATTGAAATGTGTGTT
TTCTCGGGTGGGTATGGCCAAGGTATGACATAAATAAAATACAACACGTT
GTATTCCGCATCACCCTCGGTCCCAGCCCTCCCGCAGGTCGGATCGCCCT
CCGGCCTACGGCCGTCGGGCGATCCGACCCGCGGTCGGGCTGGTACCTCG
GGTGATACGGAATACCCCGTGTTGTATTCTATATTTATCAATGACAAACT
GTTAAAGGTGTATTTTTTCAAACATAATGTACACACTTAACATTAGCATC
ATTAGTACCTGTCTCAGCAGCCTAAGTATTCAAAGTGCATTTGTTATTTT
CCCCCACAGAACCGGTTTGAGAGAGTCCAGCCAGTGCAGCCGATGCCTGG
GCGGTCACTACTGCCCCATGGTTGGACTGGTCAGTCCGTATGACCAGTGC
GACGCCGGCTACTTCTGCCAGGAGGGCGCCGAAACCTCCACACCAAACCA
AGGTGAGGGGATGACCCGCACAACTATGGCAGTATTTGTCTCCAAGACAC
AGTAGAATACAGTTCATATAGTTATCAAAAATAGATATTGTCTTACTAAT
CATTTAAATGCATGCAGGCACATAGAGAAGATTGAAAAACAGGAGATGTA
TCAAAAAGGCCATGTAGGGGAATTTTACACATTCAATTCTTTTTAAGTGT
TACAGCGCTTTTGAATGAAGAAAACAAATCTTAATAAAAGACCTCAGAAA
CAAACAGTTCACTGCAGTTCACTGTTATCATAAACTGAAAATCCTCTTGG
TCCTATAGTGATGAGGAATAAAAACTTTTAAAGTATGTGAATCATCACTT
TTTACTTAATGTTAAGCGAAACTATGATATTTTTCAAACATTATTTTGCA
GGTTCTGATGCTGACATCTGTCCAGAGGGTTACTTCTGTCCCCTGGGAAC
AGCCAACCCCTCAGCCTGCCCCAAGGGAACGTACAGTAACACCACGGGGC
TGCAGGAGGAAGGGGACTGTACATTATGCCCTGCAGGGGAGTACTGCGGG
GAGGTGGCCATGACAAACACCAGTGGACTGTGTGACGCTGGGTAAGAGTC
GTGAGACTGATAGAGGGAAACAAAGAAGATACAGTGGAGGAAATGGGCAA
CATGCATGTACATGTAAAAGTTACAGATGGTTGCAAATTGAGTGAACTGA
GCAAGTTAAAAAGGATTAAAAAATGTTTGGATATCAAGCAAGAAATGTAT
AAATGATGGTTGGAGAAATTGAGTAAGACAAGGAAGAAGTGGCATAAAAT
TAAGTGACATTGGCTAACATGTAGTATCATCTGATTTCCAAGTATACTTC
TATTGATTTCTTCTAAATTCTACTTCTAGGCCATTGATCAATATAAGGTT
GTAGAAGCTCAAGTCTATATTTCAGTCTTCAACAACTACTTACAATATGC
ACTTGGAAAACTGATGATTTTGTGATTTTTCCAACCCAGGTACTTCTGTG
AGCTGGGGTCATCCCATGCCAGGAACATCTCCTGTCCCTCGGGCCACTAC
TGCCCCCAGGGGTCAGGCAGCCCCACCCCCTGCCCCAGGGGGACCTACAG
CACCGCACCCAACAACCAGAACAGCACCCAGTGCGACGCGTGTGACCCCG
GGACGTTCTGCAACCAAACTGGTGAGAAACACTTTTAACCAGTTATCTAC
CTTCGTACTGTCCCCTAGCTAACTAACATAGAATATTCAAATGTGGTATC
GAAATGTCACCTCAGAAATATCATATCAACCCCTTTGAACTGGATGTTCC
TCGGTCAGTACATGAATTTTAGCTCCAGGCAGTCATTGTTGATTTCCGAC
ACATCACTAGTACAGTCTGGAGGATCTGGGTTGTTTGAAAACAGAATTGC
TCACATTGATAACCATGCTATACCACTGGCATTAACGGGTAATTGGTATT
CCACAATTTGCAAGAATAACGGTAATAATATACCTTGAAATGTTTGCTGA
CTGTGGTTCTATTTTTGCCCATTTCGCAGTGCCTTACTACTGGGAAATCA
TTACTGAACATGTGTTTCTGTGCTACAGTATTGTTGACTGCAAACTTAAA
ACACAGCAAAAACCTACTTTCCTGCAGCAGAAACTTGTGATGAAATTGAA
TCCCAGAGTTCAAAGTGCTTGGAGTTTTTTTGCAATTTTTTTGCTACGTT
ATCTTCCCTCCAGGCCTGTCCAACCCCTCAGGCGAATGTGACCCTGGGTT
CTACTGCCCAGGGGGAGACGACGTCCCCACCCCCGGGGACACCCCCTGCC
CCATCGGCCTGCACTGCCCCCGGGGGAGCCCGTCCCCCGTCCCCTGCGCC
CCGGGGACGTTCACTAACCTGACGCAGACCTGGGAGTGCCTGACATGTCC
TGCTGGGTTCTACTGTGTGCCAGAGGAGGTGATAGAAGGTCAGACCGATG
ATGTCCGTCATCTCTAGTTATCAAATCTTATCATCATTCAGTATAACACT
TGCTGATGCTGCAAGGCAGTTGAGACATGTATTGCACAAAACTGCGTGTC
ACACTTTTGTCTAACTCCAAGCATTGCTGAAATCTACATAAATGTATCAT
AGAAGAGGCCAATATTTGATACTGTTTGATAACATTTAGTTTCATTTTAT
AATAAGTTTATGAATAACATACCATTAGTTTGCCATCAACTTATTTTGGG
TAAATAACACTAAAACATGTAATTATGGCTGTTTCTAATGCACTTGAAAG
GCAGTGTTTACTAGGTATATTCTGTTAACAGTACTTCAATCTGTTATCAC
TATATTTATGAATTGTGTATCTACACTCACTTTCCAGGCAACTCCAGCTC
CGGCTACCGACTGTGCCCGCGGGGATACTACT Coding sequence (CDS) from alignment at Sc0000005:7296383..7302164+ >transcript:BL96659_cuf20 ID=transcript:BL96659_cuf20|Name=transcript:BL96659_cuf20|organism=Branchiostoma lanceolatum|type=CDS|length=1782bp|location=Sequence derived from alignment at Sc0000005:7296383..7302164+ (Branchiostoma lanceolatum)
GCTACTTGCATCGACTGTCCAGCAGGACACTACTGTCTGCAGGGTTCAGA
CCAGTATGAGGACAAGCCCTGCCCTCCCGGCCACTTCTGTCCCGCGGGGA
CGGCCACAGCGACAGAGAACCCGTGCCCCGCCGGCTCCTACTACAACCTG
ACCCTGGCGAGGGCCCAGGACGACTGCCTCCCCTGCCCCGGGGGAGAGTA
CTGCGCAACCCCGGGGCTGGACTACCCCACTGGCCTCTGTCAGGAGGGCT
GGTACTGTTCCGGTAACTCCACATCAGCAACCCCCACTCTGAACGGAGGC
GAGTGCCAGCCGGGGTACTACTGTCCCGAGGGCTCGTCATCTCCTCAACT
CTGCAGCCCTGGCATGTACTGTCAAACAACAGGGCTCCTTCTACCCACTG
GAAACTGTACTGCAGGTAAGCACTGTCAAACAACAGGGCTCCCTCTACCC
ACTGGCAACTGTACTGCAAGTTACTATTGCACCCTGGGAGCGCAGTTCCC
CAACCCTGTGGACAACTCCACCGGTGACCTCTGTCCTGAAGGTCACTACT
GTCCGACCGGCAGCGCTGCCCCCCTCCCCTGCCCCACCGGAACCTTCCTC
AACTCCCAGCAGAACGACGAGGAGGCGGACTGTCTGGCCTGTCCCCTGGG
GGAGCACTGCCCGGGGGTGGGGAGGCCGCTGTCCGCAGGAGACTGCGACC
CAGGCTACTACTGCCCCGGGGGTCAGAACGTCTCACAGCCTGCTGACTAC
GGCTGTCCTATTGGCCACTACTGTGAGTCGGGAGCGCACACCCCCGTCAG
GTGTGAGAATGGAACGTTCCAAGACGAGGAACTTCAGAGCTCCTGCAAGA
CGTGCCCATCAGGCTACTTCTGCGACAACACCGTCACCTATGTGGTCTTG
GACAATACCACTACCATCTGTCCCATGGGGTACTACTGTCCCGAGGGAAC
AAGATATGCAAATGAATTCCCCTGTCCAATCGGAACCTTCAACAACAGAA
CCGGTTTGAGAGAGTCCAGCCAGTGCAGCCGATGCCTGGGCGGTCACTAC
TGCCCCATGGTTGGACTGGTCAGTCCGTATGACCAGTGCGACGCCGGCTA
CTTCTGCCAGGAGGGCGCCGAAACCTCCACACCAAACCAAGGTTCTGATG
CTGACATCTGTCCAGAGGGTTACTTCTGTCCCCTGGGAACAGCCAACCCC
TCAGCCTGCCCCAAGGGAACGTACAGTAACACCACGGGGCTGCAGGAGGA
AGGGGACTGTACATTATGCCCTGCAGGGGAGTACTGCGGGGAGGTGGCCA
TGACAAACACCAGTGGACTGTGTGACGCTGGGTACTTCTGTGAGCTGGGG
TCATCCCATGCCAGGAACATCTCCTGTCCCTCGGGCCACTACTGCCCCCA
GGGGTCAGGCAGCCCCACCCCCTGCCCCAGGGGGACCTACAGCACCGCAC
CCAACAACCAGAACAGCACCCAGTGCGACGCGTGTGACCCCGGGACGTTC
TGCAACCAAACTGGCCTGTCCAACCCCTCAGGCGAATGTGACCCTGGGTT
CTACTGCCCAGGGGGAGACGACGTCCCCACCCCCGGGGACACCCCCTGCC
CCATCGGCCTGCACTGCCCCCGGGGGAGCCCGTCCCCCGTCCCCTGCGCC
CCGGGGACGTTCACTAACCTGACGCAGACCTGGGAGTGCCTGACATGTCC
TGCTGGGTTCTACTGTGTGCCAGAGGAGGTGATAGAAGGCAACTCCAGCT
CCGGCTACCGACTGTGCCCGCGGGGATACTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000005 | genome | Sc0000005:7296383..7302164 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96659_cuf20 |
| Biotype | protein_coding |
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