|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96669_cuf6 >transcript:BL96669_cuf6-protein ID=transcript:BL96669_cuf6-protein|Name=transcript:BL96669_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=545bp
PTRSAPTTVDVFLLPNTTEASPLGLLYRDLIREVMVGIPATSAVGDLVVD
MATLQTSNVTNVTYVLMCCTYDVFTLRTDGRVLVTSELDFNIQYSIPVAE
LDSFGAILFAYVIHVNLTSDVTLYKDPDGLCNTTSFYVNMEENSNIVSVD
LGSLTNQSFSGVQFSLVPGGDADRFSIDPSSGVITPNGPLDREERDTLVF
RVAMATRYDVTFGTVTVAVTDINDNAPTVVETWSSEYILQSTPINSIVGL
VRAEDPDTGENATLTYTIVAEDGEDFSELFFINNVTGVITVISNFKVIRE
HLPLKIKVLDNGEPPRFAETTVDLSLLSNEAVGNTTRLEVNVPEDVAIGT
AVVTARVPASAGDGAINYTYVMQDPSGLNEKYFSVHNETGEITVISGLDR
ETEPSHQFFVEPNAESGCDRQGLILVVITLEDINDNAPVFEHQTLQGVVR
ENTPIGEPVIIIPELVVTDEDFGINGSVDIRLTGVGSSKFAVNSTTGHIY
VSGDLDYEAAQSYTLTVEAMDRDGTSGYRSATARLTIQLQDENDN Run BLAST on NCBI mRNA from alignment at Sc0000005:7062024..7067147- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96669_cuf6 ID=transcript:BL96669_cuf6|Name=transcript:BL96669_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=5124bp|location=Sequence derived from alignment at Sc0000005:7062024..7067147- (Branchiostoma lanceolatum)
CCAACTCGATCTGCGCCAACAACAGTCGACGTGTTTCTCCTGCCAAATAC
GACAGGTGATTCTCTCTAACATTTCAGCTTGACGCTATATAACATGCGAT
GATGTAATGTGGGATTTACCTCCTGCGAATTTCTCGATTTGCATAACGTG
CACTTAGAGATGTAAAGACCACCCAATGCCTACAACTGGATAAGATACGG
TGTTAGCTTCAGGGTGTTTTGAGTGACATCCATCACTCTTCTTTAGCTTT
CTCGGAAGTTCATTCTCGTGTTGCTGAAGAAGAGTGACGGATGTCACTCG
AAACGCCCGGAAGTAATTGTCGCATCACATTCACTTGTAGACGTTTGCTT
GTCCGTCGATATTGTTTACCTGGATGTCCTATCTTCAAAAGCGTACTGCT
TAGAGATTGTATAACGCAATATGCTATTATTTCAATACCATTCACTCCAT
TGACACTAACTGTCGATGGTCATGTACATGTACGTACTTCTTCTCTTTGT
AGATGACGCTAGAATCGTGGTCTACAGTCTCCATTGTAACTATGTGCATC
TACGATATAGGAGGTTCTTTGTACACAACCAGGTATAGTTCTCACCTGCT
AACGTTTCGATGTCTATCAGACACCTTCTTCAGAGCTTCTAACTGGAGTG
CTGTTTCTCACCGCTATAAGTAGCCGAAACAGCACTCCAGTCAGAAGCTC
TGAAGAAGGTGTCTGATAGACATCGAAACGTTAGCAGGCGAGAACTATAC
CTGGTTGTGTACAATAGTAGTAGGCATCCTTCCATCTTTTCAGATGATGG
TAGCACTCTGGATTTGGCAGCTTCTCATGTGGCTCTGAAGTCCAATCCTG
GCGTGACAGTCTCGTCCACAGTTTGGACATATGAAATCAGAGGAGTTCTG
AGGCTGCTGTCTCTCTTTTCTTCTTTGTCTTCTTTGCTCTAGTTGCTTCT
TCCGCTTTGACTGACCCTTTGCTAGACCCGCGCTGACTTCATGACCTCCT
ATATCCTATATTCTACCAACCTGATGAAATGATTTTCGGGGTATGTGCAT
CTACGCAGCAATGGTCCTTCTATTCCTCCCAGAAGCCAGCCCCCTGGGTC
TCCTGTACAGAGATCTGATCCGTGAGGTCATGGTGGGCATCCCGGCCACC
TCGGCAGTCGGGGACCTGGGTAAGTAGGCACAACCTGGCGATAATGGTTA
TGAATATCATTTTGTCCCATGGTAGCTTGATCAAATAGAATCATTCGAAA
AGTATAGCCTAAAGAGAAGACAATCATACCGCCTTACCCCACATACACAG
TTCACACACATAGGAATTATCTTAGATCCGATGATGGCAGTTCTGGATGT
CATGCATATGATCCTGTAACTATTGTTGACATATTACTTAAAACTGAAGA
CTCATTTCCCAACCCTAACTTTATAGCTATCAAAGCACGTTTCCAAGTCT
GATCCCCCCCAAAACGATCGGTACGCCCCTCTGCGTTTCCTCCTTTTTAT
CATGTATGTATTTTCGCCCACCCCAGTGGTTGACATGGCAACGCTGCAGA
CCAGTAACGTCACCAACGTGACGTACGTGCTGATGTGCTGCACGTATGAC
GTCTTCACCCTGCGGACGGACGGCAGGGTCCTGGTGACGTCAGAGCTGGA
CTTCAACATTCAGTAAGGCCGTTTTCAAGTCATGCTGATTTGTTGTGAAT
GAAAGCCCGTCAACATGTCGGTAGTAAATACTCCTTTTCAACCTCACTAT
ATTTTACGGCAAACCTATCTAGAGAACATGTCTGGCAACGAGGGATAAAA
AAATAACTTCGAAAGACACAACTGTCATTTGTCGGCTTACACTAGGCCTT
TTGCATGTTTACAACAGAAAGCTACTTTCAATACCTTTCGATCATATTTC
AAAGCAATATGGGTGCTCAATTTTAATCCCCATAAAAATGCTCGGTAGCT
CCATCCATTTATCAGAAAAGAAAACAAAACAGGAAATCATATGGTTATCA
AGCTTTATTTCCTGACTGCGCCTTTTGCTTTTTAACACTTACTTTGTACC
CGTTCCAGATACTCCATCCCCGTGGCTGAGCTGGATTCCTTTGGCGCCAT
CTTGTTTGCTTACGTCATCCACGTGAACCTGACCAGTGACGTCACTCTGT
ACAAGGACCCGGATGGACTCTGCAACACAACATCGTTCTACGTCAACATG
GAGGAGAACTCTAATATAGGTAAAATTCCATATTCTAAAACAAAGGATGA
AGTAAAGCTTCATAAGATCTTTCTGTGTATCTTGAAGTAACCTTGATGTT
CATCGCATGTTCCCTATAGTGTCTGTGGACCTGGGCAGCCTGACGAACCA
GTCGTTCTCCGGGGTGCAGTTCTCCCTGGTTCCGGGAGGGGACGCCGACA
GGTTCTCCATCGACCCTTCCAGCGGAGTCATAACCCCCAACGGTCCACTG
GACAGGGAGGAGAGGGACACTCTGGTCTTCAGGGTCGCCATGGCTACCAG
GTGATCTTTCCAAACATCTTATTCAATATTTCACATGAAAGACGTTCGTT
AACGTTATCATAGTAGAAGCTGACAGTGCACTGGATGCCAAAGTCCAACC
CCTACTGCATGGGCGTCCTAGATCACGTCTGTTAGGTTTGAAAAGTCAGG
TGTATGAACATGACATTTCTTCCTGCACTGTTCCACATCAACCCAGGTAT
GACGTCACCTTCGGCACCGTGACCGTGGCCGTGACGGACATTAACGACAA
CGCCCCGACCGTCGTGGAAACTTGGAGCAGTGAATACATCCTGCAGTCCA
CCCCCATCAACTCCATAGTTGGACTGGTCCGAGCCGAGGACCCGGATACA
GGGGAGAACGCGACCTTGACCTACACCATCGTGGCGGAGGATGGCGAAGA
TTTTTCTGAGCTGTTCTTCATCAACAATGTCACGGGGGTCATTACGGTCA
TCAGCAACTTCAAGGTCATCAGAGAACACCTCCCTCTAAAGGTGATTTAA
GTTATTGCATCTCAACCATTTTACATGCGGCTCGGCCTTTAAAACGCATC
ACCAAGACCTGAAGTAGAATAAATGTCTGGATGGTCGGTTTTAGTATTTC
TAATGCAAAAGGGTTTGCTTTTAAAAGTATGAAGTTTTTAAGCATAGCCC
GAAAACTGTCAATAATGCCATGATTTACGGTGGCACTGATCACCCCAGCA
GACCCCAGCTTGTACTTATCGAAGCCTCGCTCATTCAAATATGGTCATAA
AGTTTATCTCTTTTTATCCACTCCTTTTGATCGAAATGTGAAATTCCCCA
TCAGATTAAAGTGCTGGACAACGGCGAGCCACCACGATTTGCAGAAACGA
CCGTTGACCTGTCTCTCCTGTCCAATGAGGCGGTCGGAAACACGACAAGA
CTGGAGGTCAACGTTCCAGAGGACGTTGCCATAGGTCTGTATCCGTTTTC
TTGGTGCATGCGCATGGCTCTCAAATTGCACTGGACAGTCTTTTCTGCGG
GAAGGATCTTTTTGCAGTTTTAACTGCGTTGCATCTTTCTGAAATTGTGA
TTTGTACCAGGTTTTCTGACCGTCGTTGATGGTATTTGGCAGTGAACCGT
CTTTTCTGATGTAGAGGGATTTTTGTAGCTTTGGCTATGCTGCAGCATTT
CTTTTTCTCCTGAATCGGGGGTCCGTTTGTCTAAAAAAACATGAACTCAC
CTGTGTCTGCAGGAACTGCCGTCGTGACCGCCAGGGTCCCGGCGAGCGCG
GGAGACGGGGCCATCAACTACACCTACGTCATGCAGGACCCGTCCGGCCT
CAATGAGAAGTACTTCAGCGTCCACAACGAAACCGTAAGGAATATGTTTT
TTATTTCATCTTCACACATCCTTCCAATAACTGCCTTTATTTTTTCAATG
CTCGTCGTCAACAGGAGTTCTTTGGACGGTTGATTTCTCATCAATTATTT
TCCCGCAGGGTGAGATCACAGTTATCTCAGGTCTGGACCGGGAGACGGAA
CCTTCTCACCAGTTCTTTGTGGAACCCAACGCGGAATCCGGCTGTGACAG
GCAGGGGCTGGTACGTGTCGTCGTTACTTTAATGAGAAACACGTGCAACT
AGCTGTCCTCTAGCCTTTAAAGTTTTATCTGACCGACAACCTCCGCGTCC
GTTGAGATTGTGGGGGCACCTGTATAAGATTTGTCTTTTGTATCCGTTGC
TCTGCGATATTCTACTTTCTTCATAATTTGCCTTAATGCTCTTAAATTTT
CCATTTAGTCCTCTTTGTAAGTCTTGAGCAAAAAGCACGGCCTAAGCATT
TTTCTTTTTGATAATCACAAGATTGTAATACGGTCATCTGTTGGTTTGCT
GCTGCCATTCTGAAATAAGCAGCCATCGTCTTCTTCGGATGAGAACATTT
TCCTTTTTATTCTATTTATCTATTTACAGATACCAAGGGTAGTCACTTCA
GTTATGTAAGTAAATGAGTTCTAACGGAGCCCTTACATATCATAACAAAT
CAGGATACAAAAGAACAACATAAACTTCGTTTTGTTTAAGATCTTGGTGG
TGATCACACTAGAAGACATCAACGACAACGCTCCAGTGTTTGAGCACCAG
ACGCTGCAGGGGGTCGTCCGGGAGAACACGCCGATAGGAGAACCTGTGAT
AATCGTGAGTCGCCTCTAACGTTCTTTCTTGAGATAGTCAGATGGACGAT
TCTTGCTGCCCATCGAGAACTGTAGCAAGTGTCTGCAACTTTACGAGTTT
CTAGATCAAATGATATTCGCTACATTAATTACCTTGCCCTCATACCTTAC
CTTATGAGATCATATTTAAACGGTAAGATTTAAGTATTCGCCCTCTAACA
CATCAATATTTTAATGCCGCAGATTCCGGAACTGGTTGTCACTGACGAAG
ATTTTGGCATCAACGGCAGCGTCGACATCCGCCTGACTGGAGTAGGTTCG
AGTAAGTTTGCAGTGAATTCTACAACTGGGCACATCTACGTTAGCGGTGA
CTTAGACTACGAGGCAGCGCAGAGCTACACTCTGACCGTGGAGGCCATGG
ATAGGGACGGAACATCTGGTTACAGAAGCGCCACAGCGCGGTTAACCATT
CAACTGCAGGATGAGAACGACAAC Coding sequence (CDS) from alignment at Sc0000005:7062024..7067147- >transcript:BL96669_cuf6 ID=transcript:BL96669_cuf6|Name=transcript:BL96669_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1635bp|location=Sequence derived from alignment at Sc0000005:7062024..7067147- (Branchiostoma lanceolatum)
CCAACTCGATCTGCGCCAACAACAGTCGACGTGTTTCTCCTGCCAAATAC
GACAGAAGCCAGCCCCCTGGGTCTCCTGTACAGAGATCTGATCCGTGAGG
TCATGGTGGGCATCCCGGCCACCTCGGCAGTCGGGGACCTGGTGGTTGAC
ATGGCAACGCTGCAGACCAGTAACGTCACCAACGTGACGTACGTGCTGAT
GTGCTGCACGTATGACGTCTTCACCCTGCGGACGGACGGCAGGGTCCTGG
TGACGTCAGAGCTGGACTTCAACATTCAATACTCCATCCCCGTGGCTGAG
CTGGATTCCTTTGGCGCCATCTTGTTTGCTTACGTCATCCACGTGAACCT
GACCAGTGACGTCACTCTGTACAAGGACCCGGATGGACTCTGCAACACAA
CATCGTTCTACGTCAACATGGAGGAGAACTCTAATATAGTGTCTGTGGAC
CTGGGCAGCCTGACGAACCAGTCGTTCTCCGGGGTGCAGTTCTCCCTGGT
TCCGGGAGGGGACGCCGACAGGTTCTCCATCGACCCTTCCAGCGGAGTCA
TAACCCCCAACGGTCCACTGGACAGGGAGGAGAGGGACACTCTGGTCTTC
AGGGTCGCCATGGCTACCAGGTATGACGTCACCTTCGGCACCGTGACCGT
GGCCGTGACGGACATTAACGACAACGCCCCGACCGTCGTGGAAACTTGGA
GCAGTGAATACATCCTGCAGTCCACCCCCATCAACTCCATAGTTGGACTG
GTCCGAGCCGAGGACCCGGATACAGGGGAGAACGCGACCTTGACCTACAC
CATCGTGGCGGAGGATGGCGAAGATTTTTCTGAGCTGTTCTTCATCAACA
ATGTCACGGGGGTCATTACGGTCATCAGCAACTTCAAGGTCATCAGAGAA
CACCTCCCTCTAAAGATTAAAGTGCTGGACAACGGCGAGCCACCACGATT
TGCAGAAACGACCGTTGACCTGTCTCTCCTGTCCAATGAGGCGGTCGGAA
ACACGACAAGACTGGAGGTCAACGTTCCAGAGGACGTTGCCATAGGAACT
GCCGTCGTGACCGCCAGGGTCCCGGCGAGCGCGGGAGACGGGGCCATCAA
CTACACCTACGTCATGCAGGACCCGTCCGGCCTCAATGAGAAGTACTTCA
GCGTCCACAACGAAACCGGTGAGATCACAGTTATCTCAGGTCTGGACCGG
GAGACGGAACCTTCTCACCAGTTCTTTGTGGAACCCAACGCGGAATCCGG
CTGTGACAGGCAGGGGCTGATCTTGGTGGTGATCACACTAGAAGACATCA
ACGACAACGCTCCAGTGTTTGAGCACCAGACGCTGCAGGGGGTCGTCCGG
GAGAACACGCCGATAGGAGAACCTGTGATAATCATTCCGGAACTGGTTGT
CACTGACGAAGATTTTGGCATCAACGGCAGCGTCGACATCCGCCTGACTG
GAGTAGGTTCGAGTAAGTTTGCAGTGAATTCTACAACTGGGCACATCTAC
GTTAGCGGTGACTTAGACTACGAGGCAGCGCAGAGCTACACTCTGACCGT
GGAGGCCATGGATAGGGACGGAACATCTGGTTACAGAAGCGCCACAGCGC
GGTTAACCATTCAACTGCAGGATGAGAACGACAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:7062024..7067147 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96669_cuf6 |
| Biotype | protein_coding |
|
