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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96692_cuf2 >transcript:BL96692_cuf2-protein ID=transcript:BL96692_cuf2-protein|Name=transcript:BL96692_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=347bp
MASTKPKGLLERLSNGETVVVAEGYLFEFERRGYLQAGSYVPEVVLDHPE
MVTSLHREFVHAGSDVVLAFTYYGHREKMRLIGKEHLLEPMNKNALRMAR
EVADETGTLMAGNICNTNVYDSADPASTEKVRAMFKEQIEWAVEGGADYI
VAERFDNLGEAKLALECIKQYGKGLPAVVTMIVLRDPVTLDGVPVKEALK
QLADAGADVVGFNCGRGPATMMPLLEASKGDIKVPLAAIPVPYRTNEECP
NFMSFQTETGGNAYPLELEPHLCTRFDIAELGKSAQRIGVQYVGVCCGNS
SHYLRALAESLGRSPAASKYSPDMSKHYAFGTDDTLSKSYLDASKKF Run BLAST on NCBI mRNA from alignment at Sc0000079:909291..915639- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96692_cuf2 ID=transcript:BL96692_cuf2|Name=transcript:BL96692_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6349bp|location=Sequence derived from alignment at Sc0000079:909291..915639- (Branchiostoma lanceolatum)
GCGGATTGCTCTCGAACTGCAGAAAACGACCTTTGACCTATCAGCTGAAA
CCCCATCGGTCAGGTAAGATCGCTTCCGCATTCAACTGATCGCTACGCCG
CAATATACACGCCCTATCCAGCTTGATGTCTTGCACTTAGAAAGGAAGCG
TATTGTGGGAGGGAATTGGGAAAAATCCGAAACTTTTACCCCTTCAGAAT
GCTGCAAAAACGGCGGCAAAAACGCTGATTCACCAGTAAACACCACTCAA
GCATGCTTGCACGCCCGCATGCACATGCATGATGAATCTCTGACATCATG
CACACTGACATACACTCGTCTGTTTGAAGATTGTCAGTTATCTTCACTCA
CTCTTTCTCTATCTACAGAGCTGCCAAAGTGAAGATCAAGAGCTTTTCTC
GACCGTGTAAAACTGAAAATCGTTCTTGACACGGTCTGATTCCAAAATGG
CGTCCACAAAGCCGAAAGGTAAATATAGTTGACAGCTCTTTAACAGAAAT
CATCTTGAAACATTAATCTTTAACATAGGAAACTGTTGCACCCGCTGACG
TAATGATCACTTGTGATGAATACTGGAAAGTACAATTTAAGACCGGATAC
ACAATGTGTGTGCGATGTTTTTACAATATATAGATGTATCGACATTATTT
TTATCATTAAAGTTCAAACTTTCGGTGCAACACAAGATTACTGGAACTTA
CCGAATTTTTGGTCTGGCTTTCGACGACCTTCTTGTGGATGACTGACCAA
ACTACATGTTTCCTTAGAGAATGTATAGGTAGAAAATGTTTGACCTAGAT
CTGTACATTGACAGTCTTTTTTCTACGCTTCCAGGACTCTTGGAACGTCT
CAGCAATGGCGAAACGGTTGTTGTGGCGGAGGGATACCTGTTCGAGTTTG
AGCGGCGTGGCTACCTCCAAGCTGGGTCGTACGTACCGGAAGTCGTGCTG
GATCACCCGGAAATGGTCACATCACTGCACAGGGAGTTCGTACACGCCGG
AAGTGACGTAGTTCTTGCGTTTACGGTAAGACTATGTCATGAAATATGTT
CATTCCCTTGAAGTTGATTAAACTTCCTTCTTTCTTGTTTCCTCACAGTG
AATGCCAGAAAAGGAGTTTTCATTCCAAACTTGAAGTTTATTTCAGCAGG
AAGTCCGAGTTTTCCATTCCTCAGTGTAATTCAAATTCAGATTCATTGTT
TGCAATATTGATTGATAAGTCACCTGGTATGTTGACTTTGTGTCTCCATT
GCATTGGTAGGTCTATCATAGGATGCCTTTTTCTTTTTCTATTTTCATTT
TAATCATCTAATNCTATTTTCATTTTACTCATCTAATCTATTATTATCCT
ACACACAAAGCCGAGAACCAAGACCACGGGGTATAATCTACGTCACGGGA
TGGCCAGACACATTCGATGGTCGCGGAGATCTATCAGCCGCGACGCGCAG
ACTAGACACATTCCACGCGCCGCAGAAAAATCAGCCGTCCGCGCGGACCA
ATCAGCCGCAAAGCGCTGACAAATTCGACGCGGCGCGCACCTATCAGCCG
CTTGCGCAGAAAATTCAGCCGTGGAACAACGCCATCAGGTGTATAACTGC
TGCCTCCAGGGAGCGCTGAAATGGCAGTACCAAGGTACTAGTAGGTCCTC
CACAATTTCCTTTTCTAGCGTCTTATAGAGACATCGACTGGTTATGATAA
GTGTGGCATTCGGAACATCTACGAACCTTCAGCCTCTGTCGTCCTACAGT
ATTACGGACACCGTGAAAAGATGCGTCTGATCGGGAAGGAACACCTGCTG
GAGCCCATGAACAAGAACGCTCTGCGCATGGCCCGGGAGGTGGCAGACGA
GACCGGCACCCTTATGGCGGGAAACATCTGCAACACCAACGTGTACGACT
CTGCCGACCCTGCCTCAACCGAGAAAGTCAGAGCCATGTTCAAGGTGTGC
TATTATAACGCTTTCTATTTAGCCTGGGTGCCATCCTATTTCTACCGGGG
CTCCTACACTCGCTACCCTAAAAAACTAGTCTTTTTTTTAAGGATAGCGA
GTGTCGGAGCCCCGGTAGAAATAGGATGGCACCCAGGCTACTTTCAATTA
ACCGTTATAGACTCAGTCACGGTTGAAAACGCATTCTTACGAAGTAGCTG
ATATTGTTCCGTTACTTATCATTGTTGCTTGACCATGTCTATGTATATAC
AGTAAATTACTTTAACGTTTGAGACCGCATTCTTAACACTGTAGCAGCGA
CACCTAGGTGCAGTGCAAAGTAGAACCAGTCAGTATTGCCCTTGTCAGTT
TGTTATAAACATCTGGTCTTGAATCAAGATCTTTGTAATTGAGTCTCCTT
TCCTCGTAAACCACAAATTTGTTCACCTCAATGAACTAGACTCTACATCG
TCAATGAAGGGTAGACATCCAGATAGAACAGTACATAATATCAAGCAACT
GGATAGATAGTCTAATGAGTCATTAAAAATGTAGAAAATTTATCTCTTTA
TATATCATATATCCAGTTGCTTGGTTTGCTTTGCGTTATGTACACCCTAC
ATTGGGCGTTTCACAAATTGGCTACTTGAGCAACAGCACCAAGACCCGAA
TTAGTAACATGTTGTCACATATTTTGTCCTTTTTCAGGAGCAAATCGAGT
GGGCTGTGGAGGGAGGCGCAGATTATATCGTGGCCGAGCGGTTCGACAAC
CTGGGTGAAGCCAAGCTCGCCTTGGAGTGCATCAAGCAGTATGGAAAAGG
TCAAATAACACACATTAGACGTCTTTCCGTGACTTGATACGCTCGTATCT
TATAAATCAAAGAAAGTTGTCTTGTTGGCCAACTTGCTATGGAAAATTTA
AGATATAACGGTGCAACATGTAGGAATATTTCAAGATAGAATTTTGCAAA
AACTAAAAATTCACATCTGAGACTTTCATTACAAACGTTGTTGTTCATTT
AAAAGTTCATATGTGTTGGTAGAAGTCATTCTGAATGAAGTTTGAATTGT
AAAAGCCAACACAACAAATTGGACCTACCCAAATTTTCGACTGATCAGCT
CCAGTCTTTGTCAAGGAATGAGCAATCCACTGCAACATATGATCCACTGC
TCACCGAGCCCTACCTGCATAACGTGACGTCACAGAAGCAGTGGATTGCT
CATTCCTTGACAAAGACTGTAGCTAATCAGTCGAAAATTCGGGTAGGTCC
AATTTGTTGTGTTGGCTTTTACAGTTTAAACTTCATTCAGAAACGTTGTT
GTTGTTTACAGGTCTGCCGGCTGTAGTGACGATGATAGTTTTGCGTGACC
CCGTGACCCTGGACGGTGTTCCCGTCAAGGAGGCCCTGAAGCAGCTGGCG
GACGCCGGGGCTGACGTCGTCGGCTTCAACTGCGGCCGTGGCCCGGCAAC
CATGATGCCTCTTCTCGAGGCCTCTAAGGGCGACATAAAGGTTTGAATAA
GCCCACACGGAGATTCAAGTACGCATGTGCAGTGTCATAGGTGAAGGCCC
CTGAGACGTAAACAAAACCCGTCTGGGCGTTGCCTTTATGCAAATCGAGA
CAATGGTCGCGACAGAAGCCAGGGGCCATCACCTTTGATACTGCACATGC
GTACTCGAATCTCCGAGTGGGGTTATAGAAATATATCATGAAGATAGCTA
GTTACTATGTAAGTATGCCTATAGACTTGGATTGGAAGATATACATCTTG
ATATTAATGTTGAATTTGGTGTGCACGTGATATACGTATCATAGAACGCC
TTAAGGATGACGGGCGAATAAAGTAACTTATAAGAACATATATTCCAGCG
TCAGGATCATCCCCAGTAGTCTCATACAACGTTTTGCCTTACCAGTTACA
GTTGGTGTGCAATAACCTTTAACTTTGAATTTACATCACTTCTTTTATCT
GCGTCCCAGGTCCCTCTAGCCGCCATCCCTGTGCCGTACCGAACAAACGA
GGAGTGCCCCAACTTCATGTCCTTCCAGACTGAGACGGGTACGGGAACTT
CCTCTCGAGCTGCTTGTTAAACGGACACCTACTCTACATAGACAATGTCT
TTGTTATCTCCCGTTAAAGAAGTTTAACTTCTATTGTGCAGGCATACTTT
TGAAGCAAATTGTGGGAACCTTGTGGAAAAATTCAAATGATATAACAAAG
TTCAAGAAGACGCGTTCTCATCTTTTCCTCATCAAGTCTGCACTTTCATT
CGTTCACTTTTTAATGCTGTGATCTTGATGAACAAATCATCAGAATGTGC
AATGATTTTGCTTAAAGGACTTTCTTTTATGGTGGTAAAATTTTCCAATA
TTTTGACAACCATTTGCAATATCGCATTGAATGTAAGTATCAACACAATT
CAGACATTTCAAGTCTGCGAAGCTGTATGAAGAGTAAAGATTTACAAGAT
TTCAAATCCATGTACTCTTTCCCACAGGACGTAATGTCAACTTGAAATAG
ACAAAAAAAACATTTGGATGTAATCATACCTCCTCATTCTGCTATTTGGT
TCGTTCACTTGTTGATGTTGTCGTCCTTATGCTCTTCTCCACAGGAGGGA
ACGCCTACCCGTTGGAGTTGGAACCGCACCTGTGCACCCGGTTCGACATC
GCAGAGTTAGGCAAAAGCGCTCAGCGGATCGGCGTGCAGTACGTGGGGGT
GTGCTGCGGGAACAGCTCGCACTATCTTCGCGCCCTGGCCGAGTCCCTGG
GCCGCAGCCCCGCAGCCAGCAAGTACTCCCCCGACATGAGCAAGCACTAC
GCCTTCGGCACTGACGACACGCTGAGCAAGTCGTACTTGGATGCGTCCAA
GAAATTCTAGCAAAATCCCCGACCGTCGTGTTGTGCACGTTTGTCTCAGT
TCACTTGTAATTCGTCGTGCTGCTATTGTAGAATGTATCGTGTGTTGTCG
AATCTACATGTCTTGTAACCAACGACGTCCAAGAACGTTCAAACTGTTTC
TGACATTGCAAATAAATCCCCTGACCAAATGAAACACACTTCTATTTTTC
AAACTAGTGCGGTTGGTAGTCCTTGCAAGAATGAGTGTGACAAGAAGAAA
GGCTGAATAATTCTGCTCAGTTGACAGACTGCCCAAGCTCTGGAGACAGG
TGTTAAGGTGTTAGCTGCAACCTAAAAAGACATCAACAGGGCTAGATTTG
TTGCTATCTCTTGTGATCTCCAGCCTATTCTCCCGATACGTGGTATTTCC
CTAGGCCTTAGCATGAATCACACAGTTATGTTGCCATGCATAGACTAACT
CCCCGTAACGTATTGCCAAGGCTACAAATGCGTACGTATGTTCACCTGTG
GGCGTTCATGCGTAGCTGCTGCATAAATCAGATGGATATATCTATAGCGC
CGACTTTACAGCCGGACGTGGCGCAGCATGTAGGCACACGACCCTCTGTT
TCTCATGTTCACATTTGGGAATCGCCTCTTTCATGACGCACTTCGTATGC
ACCAAGTGCACCCATTGGCGCGTGAAATTGGGCGCGGAGAAAATGATATG
CCTATTTTTGGACCCTCTCCGTTCCTCCGCAGCACGCTAGACCATTAGTC
TTGCATTTGGCAGAAGGGTATAATGGGCTTAGGTAATCATTATTCCACGC
TCTACTTGGACGTTTATTTCTGGGCCCAAATTAAGCCACGTGCCATGGTG
GGCATTGACCTTCCAAGAAGCACCAAAAAAAGGGACACCGCAAAGCATCA
TGGGAACTCCCGTCCAAAAAACGGACAGAAAAAGAAAGAAAATATTGATT
TTGTAAGAACTAATTTCAGAGCTGTCGCATTTAACCGCTACGTTTGCTTG
AAATTCTACTTGTTCGCTCGAAAGCGCGGCGGTTTTCTGCAATCGTGTGC
TGGATCTGTGCGAGTGGACCTGAGTATTCACTTATCGTCTGAAGAACGAT
TTTTACCCTGGACTGGCGGCTTGCTGGCATGCTTGGCTGGGCTCAAGGTC
CTGGAAAATGGAAAACCAGGGACGTTTCGTTGATTTCAACGAGAAATGCG
TGTGAAGTAAGACTTAAGGAAAAACGTTACGTTTCCGGTTACGGTCCTGA
AAAAATTATCTTCTTTTTTTTTCAATGTCAAACTGGAATGTATCAGGACA
CTGGTATTTTCAACATGATGTTGCAATTGTACAGCTATACATTATTGTAC
AAGCACAGGTATGTCAATAAACAAAGGAATACAATGTTTCCTGCACATTT
CCACATCAACTGTTGGAAGCCGTAATCGGTTAAGAAAGTGTGAACTATAG
AAAGTCTGTAAGAAAATTTGCTTGCATGATTACTCTATTCTGAATTTTCA
TCACTGAGATGTCAGATCTAAAATTTAATGTCACTTGCTAGAAGTCGAC Coding sequence (CDS) from alignment at Sc0000079:909291..915639- >transcript:BL96692_cuf2 ID=transcript:BL96692_cuf2|Name=transcript:BL96692_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1044bp|location=Sequence derived from alignment at Sc0000079:909291..915639- (Branchiostoma lanceolatum)
ATGGCGTCCACAAAGCCGAAAGGACTCTTGGAACGTCTCAGCAATGGCGA
AACGGTTGTTGTGGCGGAGGGATACCTGTTCGAGTTTGAGCGGCGTGGCT
ACCTCCAAGCTGGGTCGTACGTACCGGAAGTCGTGCTGGATCACCCGGAA
ATGGTCACATCACTGCACAGGGAGTTCGTACACGCCGGAAGTGACGTAGT
TCTTGCGTTTACGTATTACGGACACCGTGAAAAGATGCGTCTGATCGGGA
AGGAACACCTGCTGGAGCCCATGAACAAGAACGCTCTGCGCATGGCCCGG
GAGGTGGCAGACGAGACCGGCACCCTTATGGCGGGAAACATCTGCAACAC
CAACGTGTACGACTCTGCCGACCCTGCCTCAACCGAGAAAGTCAGAGCCA
TGTTCAAGGAGCAAATCGAGTGGGCTGTGGAGGGAGGCGCAGATTATATC
GTGGCCGAGCGGTTCGACAACCTGGGTGAAGCCAAGCTCGCCTTGGAGTG
CATCAAGCAGTATGGAAAAGGTCTGCCGGCTGTAGTGACGATGATAGTTT
TGCGTGACCCCGTGACCCTGGACGGTGTTCCCGTCAAGGAGGCCCTGAAG
CAGCTGGCGGACGCCGGGGCTGACGTCGTCGGCTTCAACTGCGGCCGTGG
CCCGGCAACCATGATGCCTCTTCTCGAGGCCTCTAAGGGCGACATAAAGG
TCCCTCTAGCCGCCATCCCTGTGCCGTACCGAACAAACGAGGAGTGCCCC
AACTTCATGTCCTTCCAGACTGAGACGGGAGGGAACGCCTACCCGTTGGA
GTTGGAACCGCACCTGTGCACCCGGTTCGACATCGCAGAGTTAGGCAAAA
GCGCTCAGCGGATCGGCGTGCAGTACGTGGGGGTGTGCTGCGGGAACAGC
TCGCACTATCTTCGCGCCCTGGCCGAGTCCCTGGGCCGCAGCCCCGCAGC
CAGCAAGTACTCCCCCGACATGAGCAAGCACTACGCCTTCGGCACTGACG
ACACGCTGAGCAAGTCGTACTTGGATGCGTCCAAGAAATTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000079 | genome | Sc0000079:909291..915639 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96692_cuf2 |
| Biotype | protein_coding |
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