|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96704_cuf1 >transcript:BL96704_cuf1-protein ID=transcript:BL96704_cuf1-protein|Name=transcript:BL96704_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=377bp
GKDGPCSTCTYEKRQLICKCEVGYAGSNDGLTCGLDSDQDGYPDAPVPCN
DTTCKQDNCPWTPNSGQEDTDDDGSGDACDYDMDNDGVINTLDNCPLAAN
VAQTDGDGDGVGDDCDNCPADINPDQQDTDGDGRGDACDQDSDGDGVHDH
QDNCPLQPNVNQTDSDGDGVGDACDNCPYVPNADQIDADQNEIGDACTNG
IDSDADGYPDSLDNCIMVPNSAQLDTDNDGQGDECDDDDDNDTIADDIDN
CRLLPNVNQTDFDGNGIGDVCTLDFDNDGVLDADDVCPANDVISSTDFRK
YLTVNLGDVNSNSPPHWEFSNQGAEITQKLNSDPGILLGMTNFGSVEYRG
TFFVNTQVDDDFVGFVFSYQSNSRFYL Run BLAST on NCBI mRNA from alignment at Sc0000016:2089847..2093142- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96704_cuf1 ID=transcript:BL96704_cuf1|Name=transcript:BL96704_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3296bp|location=Sequence derived from alignment at Sc0000016:2089847..2093142- (Branchiostoma lanceolatum)
CGGAAAGGATGGCCCCTGTTCCACCTGTACTTACGAGAAGAGGCAACTGA
TATGTAAGGTAAGACTTTTGTGGGTCCAGATATTGAGAATAATAAATCTA
TGTAAACCTGTGAAAAGTACTGCAAAACGTCTAGATGGTTAAACGTTATA
AGTTCCTCATCGCATTTCAGTGCGAGGTCGGCTATGCTGGCTCTAATGAC
GGACTGACCTGCGGCCTGGACAGTGATCAGGACGGCTATCCTGATGCTCC
AGTGCCCTGTAACGATACTACCTGCAAACAGGTATCTGTGCTTTCGTTTC
TTAAAGCAAAAATTCACTGTTTACTTCAAAATTCAATAAATTACTGTTTC
TGCCATCATAGAATGTTTGCACCTGTTGTACATATTGAAATGCGCCATTC
ACTGTGACCTTTCATACAAAGTATTTCAATCACGAACGTTGCCTGTTTGT
AATGGGTCTTTTGTTTCAACATTCTAGGACAACTGCCCATGGACACCCAA
CAGCGGGCAGGAGGACACAGATGACGACGGGTCAGGGGACGCCTGTGACT
ATGACATGGACAATGATGGCGTTATAAACACTCTGGTAATAACCCAAGCC
ATACCTCAACTAGTCTATAACATAACTAATGTAAAATAGACACTATTGAC
ATAATTCAATTGTTATGTTTGACAAATCTACAAATTGAAGCATTTTATCA
ACTAGTCTCTTTAAAAAAACTCATTATCTTTAATTCAGTTATTTCCAAAT
CATCTATTGGCACCTTTAGCACACTGTTCACTACCCATCCTAGCCAAGAA
TGTTATGTTTTCGGAAGCGTACGTGATTTAGTTTGTGTGGCTGTGACCTT
GATTGATAGAAACAAAATTTAAACTCTACAGATCTAGATGGATTGCCATG
ATATTTCATGATATGTCTTTGGGTCTTTAGGATCTGAATCTCGTAATGCA
TTATAACCAATGCTGACCAATACATTAAAAAAAATTATATTTAAAAAAGG
ACAACTGCCCCTTGGCTGCTAACGTCGCCCAGACGGACGGCGATGGGGAT
GGAGTCGGTGATGACTGTGACAACTGTCCGGCCGACATCAACCCTGACCA
GCAGGATACCGACGGGGATGGGCGGGGTGACGCTTGTGATCAGGACAGCG
ATGGAGATGGTAAGGAAAGAAACCAACTAGTAGATTTTTTTCACAATCGT
CAAATGACGATGTTCTTATGCCTGAATACAACTCTACTTTTAATATATAC
GTTGCAAAGCCATGTCCAAAGGCTAGTTGCAAATAAAGCAAAGGGATAAA
GTACATGGTAGCTATCACTGGATCAAATGGGTAAAAGACTATGGGGGATT
TTAGCACACCGAGTTTTAAACCGTTTCAACTACACATACTGTCATACAGG
AGTGCACGACCACCAAGACAACTGTCCCTTGCAGCCCAATGTCAACCAGA
CTGATTCAGATGGAGACGGCGTTGGAGATGCCTGCGACAACTGTCCTTAC
GTTCCAAATGCTGATCAGGTACATATACATCGCTACCGTTAATTTATACA
CCGTCACTTCATTACGATTTCGTTCCCTACGTTTGAGAAGTTGAAGTATT
GTTTAACACATGTTGTATCTGTGTTGCTACTTTAGATTGATGCAGACCAA
AACGAGATAGGGGATGCTTGTACAAACGGCATAGACAGGTAATTAGAAGA
AAATATTCATATTTATATTGATATATATTAATCTATCCTGGCATGTCAGC
TTACTGGCGTTAGCCGGCATAACTTGAGTCCCCTTAAAAAAACATTTTTT
GTCTTCGATGTTATGAACCCCAGGATGCAAGTTGAGAATCTGATATTTCT
TGTCTTTTTTGTAGTGATGCTGATGGCTATCCGGATAGTCTGGACAACTG
CATCATGGTGCCCAACAGCGCACAACTCGACACGGATAACGATGGACAAG
GTAAATCGATTTAAACATGTAACATTTAAGCTGATGCATCTTGGGTTTAT
TCTAGCCATACTTGCTGAAGATGTCGTATACGTTTTGCTTTCTTTCGTTA
ATTGCGAATGAAGATTACATTCACAGAGACATTCAGCTACTCAAAGCATC
AGGTGCATTTGCAACCGTATATAAATAAACATCAGATCATTTCCTCATGG
ATAAACATTAGACGTGATCTCTACATCAATATTTACTTCTTCATAGATGA
ATGTTACAACAAATCACTTTTCCGTTCTGCAGGCGACGAGTGTGATGATG
ACGATGACAACGACACTATTGCTGATGATATTGACAATTGCCGCCTTCTG
CCGAATGTGAACCAGACCGACTTCGACGGTAAGATTGTCTTGATGCCTTC
AGATCTCTCTGTCGTTGAAATCATCTTTCATTGCTGTACATGTGTAGGTA
ATCCATCTGTGTTTACATCCGTGTGGCAAGCTGGGAAAAACAGATGCATA
TTCTAGTACATCATTTGATAACAGAGCTAAATATATGTGCTTCTAGTTAC
CAGTTTCTTGATATGTTTTACAGGAAATGGTATAGGAGATGTCTGCACCC
TTGACTTTGACAATGACGGCGTGTTAGACGCCGATGACGTGTGTCCAGCA
AATGACGTCATCAGCAGCACTGACTTCAGGAAGTACCTCACCGTCAACCT
GGGAGACGTCAACTCCAACAGCCCGCCACACTGGGAGTTCAGTAATCAGG
TGAGACCTTCGTCTTTGGATGCCTTTCACCAAAATCATTATTCTCAAATA
AAACCAGCCGTAAGTTGTGCAAATCCTTCCTTTTTCCCCACAGGGTGCCG
AGATCACCCAGAAGCTGAACAGTGATCCTGGAATCCTTCTCGGTACGTAT
CATTCCATTTGCATCATCGTGTCGTGCTTTATGTATGATCTTTCGGATAT
TCTCGATGTTTTACATCGATGATTTTACAGTGAAGTAAAGGTAACAGCGT
TAATACCACACATCTACTTATATAATAGTCTAGGTTTCAATTGTCTTCAC
ATTGAAAGTATCTAACAGAAGGGATTTCAGAAAGTGATGTCTAATCTAAT
AGGTCTTTTGTGACCAAAGCTAAATCGCTAGCGCCAGTAGTAGTTTCTCA
TCCAAATGTTCTGATCATTGTCTGCATGGTGCATACAGTATGTTGATGAT
ACATATAAATGTTACTCTCAACATCGCAGGAATGACCAACTTCGGCAGTG
TGGAGTATCGTGGAACCTTCTTCGTAAACACCCAGGTTGATGACGACTTT
GTGGGTTTCGTCTTCAGCTACCAGAGCAACTCTCGCTTCTACCTGG Coding sequence (CDS) from alignment at Sc0000016:2089847..2093142- >transcript:BL96704_cuf1 ID=transcript:BL96704_cuf1|Name=transcript:BL96704_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1131bp|location=Sequence derived from alignment at Sc0000016:2089847..2093142- (Branchiostoma lanceolatum)
GGAAAGGATGGCCCCTGTTCCACCTGTACTTACGAGAAGAGGCAACTGAT
ATGTAAGTGCGAGGTCGGCTATGCTGGCTCTAATGACGGACTGACCTGCG
GCCTGGACAGTGATCAGGACGGCTATCCTGATGCTCCAGTGCCCTGTAAC
GATACTACCTGCAAACAGGACAACTGCCCATGGACACCCAACAGCGGGCA
GGAGGACACAGATGACGACGGGTCAGGGGACGCCTGTGACTATGACATGG
ACAATGATGGCGTTATAAACACTCTGGACAACTGCCCCTTGGCTGCTAAC
GTCGCCCAGACGGACGGCGATGGGGATGGAGTCGGTGATGACTGTGACAA
CTGTCCGGCCGACATCAACCCTGACCAGCAGGATACCGACGGGGATGGGC
GGGGTGACGCTTGTGATCAGGACAGCGATGGAGATGGAGTGCACGACCAC
CAAGACAACTGTCCCTTGCAGCCCAATGTCAACCAGACTGATTCAGATGG
AGACGGCGTTGGAGATGCCTGCGACAACTGTCCTTACGTTCCAAATGCTG
ATCAGATTGATGCAGACCAAAACGAGATAGGGGATGCTTGTACAAACGGC
ATAGACAGTGATGCTGATGGCTATCCGGATAGTCTGGACAACTGCATCAT
GGTGCCCAACAGCGCACAACTCGACACGGATAACGATGGACAAGGCGACG
AGTGTGATGATGACGATGACAACGACACTATTGCTGATGATATTGACAAT
TGCCGCCTTCTGCCGAATGTGAACCAGACCGACTTCGACGGAAATGGTAT
AGGAGATGTCTGCACCCTTGACTTTGACAATGACGGCGTGTTAGACGCCG
ATGACGTGTGTCCAGCAAATGACGTCATCAGCAGCACTGACTTCAGGAAG
TACCTCACCGTCAACCTGGGAGACGTCAACTCCAACAGCCCGCCACACTG
GGAGTTCAGTAATCAGGGTGCCGAGATCACCCAGAAGCTGAACAGTGATC
CTGGAATCCTTCTCGGAATGACCAACTTCGGCAGTGTGGAGTATCGTGGA
ACCTTCTTCGTAAACACCCAGGTTGATGACGACTTTGTGGGTTTCGTCTT
CAGCTACCAGAGCAACTCTCGCTTCTACCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:2089847..2093142 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96704_cuf1 |
| Biotype | protein_coding |
|
