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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96707_cuf1 >transcript:BL96707_cuf1-protein ID=transcript:BL96707_cuf1-protein|Name=transcript:BL96707_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=266bp
GQEYLTTVGNLNFFKVQVSGQMTNANVKATCEAEGMRYPCHNLGTGQCTQ
WWTSDCITLDALDGTHCNTLWALSANLCGTEDPRHCQPLDDTFLNIPHWQ
SDDSAYGVDYETHSYNLEGTDYNNKYTVCAEIDDCKSSPCAHGTCNNNVG
GYNCSCDNGWEGTDCDQIMDDCASSPCWFGGTCVDGFRNFTCICPKGFEG
KKCEVAAFSGQCYQFSTEALSHTEAQRACSTENGHLADVKDGQQQLFITD
GIXDGREGRAAATLHH Run BLAST on NCBI mRNA from alignment at Sc0000016:1936661..1941079+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96707_cuf1 ID=transcript:BL96707_cuf1|Name=transcript:BL96707_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4419bp|location=Sequence derived from alignment at Sc0000016:1936661..1941079+ (Branchiostoma lanceolatum)
AAGGCCAGGAATACCTGACGACGGTGGGCAACTTGAATTTTTTCAAGGTC
CAGGTCTCAGGACAGATGACCAATGCGAACGTCAAGGCCACGTGTGAAGC
GGAGGGGATGAGGTACCCGTGCCACAACCTAGGTACAGGTCAGTGCACCC
AGTGGTGGACCTCAGACTGCATCACGCTTGACGCGCTTGACGGTACCCAC
TGTAATACCCTATGGGCCCTCTCGGCAAACCTGTGTGGAACTGAGGACCC
TCGACACTGCCAGCCCCTTGATGACACCTTTCTGAACATCCCCCACTGGC
AGAGTGATGACAGCGCTTACGGAGTGGACTACGAGACTCACAGCTACAAC
CTGGAGGGAACAGACTACAACAACAAGTATACCGTATGTGCAGGTGAGAT
TGCATTATTGGTGTTATTTCGCCCTGGACAAAACGGTATAAAATGCTGAC
TATCAGTGAGAATAGATTGAATAGCCCTGATTAATTTTATTTAGCCACCA
AGATGCTCTGTATATAACTTAAATCTTTTTTTAAGTCTCCTTTCAGTTTT
TCAGTTTTTTTTACTGGTCTTATTTTGCATAAGTACGCCGTATTTGTGAT
CACTGACTATATGCTGATAAGGAAGGTAACTTAACCAAGTTCATGCACAT
AGCTGTCAGCTGCATTCAAAACATATGTGTACATATTCATTTCTTGTTTT
GCCGAAAAATAGAATTTTGACAATAATGACAGTAATAGCGCTGAGCATTG
GGTCACTTCTCTAGACGTCCTGGCCCTAAAATATACGACCTGTGCCAAGC
AGAGATACAACTATCATACACATAAGAAATCTAACTTGATTAAACACTAA
AAATTTGGGTCTGTAAGTGTTTTTTAGTAGAAAACCAACCAAAGAAAACA
ACGTAAACATTGCTGTCGTCTGACGACATTGTTTTCCCGCCTTTTTTTCT
GGCCGCGATGGTGCCCACGTGGCGGGACGATTCAACGCCCAGCGTGGTCC
AGAGATTTTGTTACGCTCTAACATATGATTGGTTCCGTCTATGAAAAGAA
AACTGAATAAAGAGATGGCGAAGATATTTTCCAATAAGTAGACGGAGTGT
TGTTAATGTAAACAGTGTCATTTTTTTCGTAATTTTTTTTTTCAGTCGGG
CCGCATTCAATACGTACATCGAGCCACGCACACAGTACGTTGTAGCCTAT
TTCCCTTGAAAACATGAGCTGGGATGAGCTTGAAATGTAGAGCTTTTAGT
ATAACGTCTAGCATAACGTGACAATTCTCCAGGCAAAGGAAAACTAGAAT
ATAGTAGACTACAAGCCTCATTTATATTTTCTTAATTTCATTTTCATTAA
TTCGAAGCCGAGCAAAACTAAAAAAGCGTAGCACTAAATCAGAACGTACA
TTCACGAAGACGTCTCACAGCGTTTTCCGCTTGTAACTTGGAGTGTAAAG
GGATCATGAACCGTATGAATGCATTTCTTGTCCAAGTATGTTCTTTCGAT
GAATTTGTTCAAAATTCATTCATTAAAACCTGACCACTCTCTGGCAACCA
GCGATAGAGCGCCGTGAGTTCCAGCGCGTACAAAACGTGCGATGCTAAGG
CATTTCCCGTTAGTACTGTTCACTTTTTTGTACAAGATTTGTGTTCTTCA
TCACGATATCTCAGCGGAGAGTGGAGTCATTTCCGTCTCACCTCACCTCA
CCTATCCCTTGACTACTCTCCAAGCAGAGCTAGGGTTTCGGCTGGTTTTT
AACGTGTTTTTAGGCGTTTTTGTCATGCCTTCTACTTTGTCATCGTTTTT
GTTGTGTCGTTGCGACTCAACAAAAACGATGACAAAGTAGAAGGCATGAC
AAAAACGCCCAAAAACACGTTAAAAACCAGCCGAAACCCTAGCTCTGCTT
GGAGAGTATCCCTTGACCTCCTCTGGGGTCGTTGGGGGTACCATGAATAG
ATCCTCCACCATCCCTCTCCACCTCANTGAATAGATCCTCCACCATCCTT
CTCCACCTCACTCTATCTTATTTCCGTCTATGGTAGCAATTTACCATAAT
TTCTGTGCGTGCTGTTTTTCCTGTTATTACTCACTAGAAATTGACGACTG
CAAGTCCTCCCCATGTGCACACGGAACCTGCAATAACAACGTTGGAGGCT
ACAACTGTAGCTGTGACAACGGCTGGGAGGGGACCGACTGCGATCAAAGT
GAGGAATTGCGCCTTCATTTCCCATCAATCAATCATTCGCAGGCATCAGT
GTCTGATGCATGGCGGCTGCAGACCATCCTTGTTAAACCAGGACCCATAT
CGCTCCACGTTACATCAGTCGCGGAATGGGCCCTGGTAAAAAGCTTCGCC
ACATATGGTTATGGCAGGTCGACGAGACTTGGCCATGAATGATTAATGAA
CTGACCTTATTTGGCACAAACGGCAGTTGTAGCTCATGAATAATTAATGA
GCTAGCCGTAACACGTAACCTGATTGGTCGATAGCTTCCCAGCGTTCTTT
GCGCGTTGGCTTCCGATGAGAGGAAGCAAACCCTCTGATTGGCTGAAGCT
GTTTTGGTGGCGACGTCGTCATAACCATATGTGGCGAAGCTTTTTACCAG
GGCCCATTCCGCCACCGATGTAACGTGGAGCGATATGGGTCCTGGTTTAA
CGAGGATGCTGCAGACATGCATAGGGCTCGCCAGGCTGGTCTGCTCTCGG
CATAGGCTCTCCATTTGTTTCTGGTGACTCCCAGCCCCTTCATTTCCCAT
GCCAGAGTTTATTATTGCCCCTATAGTTCTAAACAATATTCATAGAAACA
GCCTGATAAGGTATATCATTTTTTGTTAAATTAAAATCAAGGGTTGAAAA
TAAAAGTAGCGGTTAAACCACGTTAAAAAGTTAACAAATGGACAGTATCT
TAAGTTATAGTGCATGGAAATAAAATCATTTCTAATTAAGTGTACGTTGA
TATCTTTTAGTTATTAGATACGAAATTCAGAGTTTCAACACATGGTCAAA
ATTGTGTGGCTGTCTAATTTTACTGCTTATTTTCTTTTTGCAATTTGCAG
TTATGGACGACTGTGCCAGCAGTCCTTGTTGGTTCGGAGGGACTTGCGTG
GATGGGTTCAGAAACTTCACCTGTATCTGTCCGAAGGGTTTCGAAGGAAA
AAAGTGTGAAGTCGGTAAAACATTGTGTTTTTTGCAAACACCAAGTACAT
GTACTGTACTAGTGACATACAATCTATTTGGACATTACATCTCGTACCTA
GACTTTAACTTAAAAAATACTTACATCGTTCTCATTTTTCTTGAATGCTG
AATATGATCACATCTGTTTACAGCTGCATTTTCCGGACAATGCTACCAGT
TCTCGACCGAAGCTCTCTCCCACACTGAGGCTCAGCGGGCCTGCAGTACC
GAGAACGGTCACCTGGCGGACGTGAAGGACGGGCAGCAGCAACTCTTCAT
CACTGATGGCATTGNTGACGGACGTGAAGGACGGGCAGCAGCAACTCTTC
ATCACTGACGGCATCGCGACCACGACTGGGAACTCCAGCTGGCTCGGGAT
GAAGCTGGAGCCAGTTTACACTGTCAAGTACAGCGATGGTTCGGTTGCCC
AAGGTCCGTGTACAGATTTCATTGATTCTAAACTTCGTCTTATGTATATA
TTCTCGCCTGCAGTGACGGCTCGGTTGTTCAAGGTTTGTGTACAACTAAT
CTTAATCTGGCAATGGCAATTACTTATTTGCATGTTTTTGCCCCCATGGT
CTAAATGCAGTTAATAAACTATTTCTTCAAAGACTAAAGGTAAAATCTCA
TTACCTGCATTGTTGATAGAGAACAAGGTTGCAGACAAAGCATTCATGTA
TAAAAAGGTAATGCTACCATTACATTGTATGCTCGGCACTTTCTTTATAC
AACACAAGGAATTAAAGAAGGCCTAGTGCTCGTTCCATGAGATGACAACA
ATGAGTTTGGTATCATAAGAAAGGAGAAACCAGAAGCTTTCCAGTGATAT
CTAAAACATTGAAAATGATAAAGAAGCAGAGGAAATAAGATCAGCCAAAG
TAAAAATTACAGACTTTATTGTGCTGTTTGGAATCTTACGCCTTGTAGCT
AAATACTATTACTCTTCAAAAGTTAGAGGTGATTTCATCTATAACTATAT
CAATTGTATTACTACTGCACCAAAGAGTTGTGTTAGCTGTGAATTCAATA
CCACGACAACATCCGCCACAAAGAAATAAAAGCCCCGCTAAAATGAATGC
ATGAATTACCAAGGTACTTTCAACTTGATGCCAATGTATAGTGTCACGAT
TTTATCAATCGGCATACATTTGTTCTTACACTATGTGTATGAACTTTTTT
TCAACAGCAGGTCCCCTACAGATGTCTGCTGTTCAGCCCCCCGCCCATTG
TGACTTTTGCGTTCTCCTC Coding sequence (CDS) from alignment at Sc0000016:1936661..1941079+ >transcript:BL96707_cuf1 ID=transcript:BL96707_cuf1|Name=transcript:BL96707_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=801bp|location=Sequence derived from alignment at Sc0000016:1936661..1941079+ (Branchiostoma lanceolatum)
GGCCAGGAATACCTGACGACGGTGGGCAACTTGAATTTTTTCAAGGTCCA
GGTCTCAGGACAGATGACCAATGCGAACGTCAAGGCCACGTGTGAAGCGG
AGGGGATGAGGTACCCGTGCCACAACCTAGGTACAGGTCAGTGCACCCAG
TGGTGGACCTCAGACTGCATCACGCTTGACGCGCTTGACGGTACCCACTG
TAATACCCTATGGGCCCTCTCGGCAAACCTGTGTGGAACTGAGGACCCTC
GACACTGCCAGCCCCTTGATGACACCTTTCTGAACATCCCCCACTGGCAG
AGTGATGACAGCGCTTACGGAGTGGACTACGAGACTCACAGCTACAACCT
GGAGGGAACAGACTACAACAACAAGTATACCGTATGTGCAGAAATTGACG
ACTGCAAGTCCTCCCCATGTGCACACGGAACCTGCAATAACAACGTTGGA
GGCTACAACTGTAGCTGTGACAACGGCTGGGAGGGGACCGACTGCGATCA
AATTATGGACGACTGTGCCAGCAGTCCTTGTTGGTTCGGAGGGACTTGCG
TGGATGGGTTCAGAAACTTCACCTGTATCTGTCCGAAGGGTTTCGAAGGA
AAAAAGTGTGAAGTCGCTGCATTTTCCGGACAATGCTACCAGTTCTCGAC
CGAAGCTCTCTCCCACACTGAGGCTCAGCGGGCCTGCAGTACCGAGAACG
GTCACCTGGCGGACGTGAAGGACGGGCAGCAGCAACTCTTCATCACTGAT
GGCATTGNTGACGGACGTGAAGGACGGGCAGCAGCAACTCTTCATCACTG
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:1936661..1941079 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96707_cuf1 |
| Biotype | protein_coding |
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