transcript:BL96712_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96712_cuf0
Unique Nametranscript:BL96712_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96712_cuf0

>transcript:BL96712_cuf0-protein ID=transcript:BL96712_cuf0-protein|Name=transcript:BL96712_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=172bp
LYYTWQGFVTKKLCTTASDMALLSILVFALLRYSAANVTAGLNEIEVSEA
GISTGSCQALEYLLLYTGRLERDIEELRNKTDALDKQCCTGQTAISMAGL
QTVVNDQAATIQQLQSMLNQLSDRLSGPRDCMELLATGHDTSDVYTIYPD
GGGKSPVHVYCDMDTDGGGWTV
Run BLAST on NCBI

mRNA from alignment at Sc0000027:2151320..2152154+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96712_cuf0 ID=transcript:BL96712_cuf0|Name=transcript:BL96712_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=835bp|location=Sequence derived from alignment at Sc0000027:2151320..2152154+ (Branchiostoma lanceolatum)
CTCTGTATTACACATGGCAAGGGTTTGTCACCAAGAAGTTGTGCACAACA
GCTAGCGATATGGCTCTTCTTTCAATTCTGGTTTTCGCACTCCTGCGATA
TTCCGCCGCAAATGTGACAGCGGGTCTGAATGAAATCGAAGTGAGTGAGG
CAGGGATATCTACTGGGTCTTGCCAGGCCCTTGAGTACCTGCTTCTGTAC
ACCGGTCGCCTGGAGAGAGATATTGAAGAACTGAGGAACAAAACTGACGC
CTTGGACAAGCAGTGTTGTACTGGACAAACTGCGGTTGGTGGGTTTTTTC
GTATCTCCTATCTTGACAACTAAGAAATTCTTTTCAAAACGCCGGTCGTC
CGAAAATTTAACAGCAGGGGTGTTGAAATTGTACTTTTACCTGTGGGAAT
TGTTCTTGTCGGCCACGGTACTGGATATTTTGTGTTCTCAACCGGCAGAT
ATCGATGGCTGGTCTGCAGACTGTGGTTAACGACCAGGCCGCCACCATCC
AACAACTGCAAAGTATGCTGAACCAACTATCAGGTACTCATCATATCATT
TACTCAGTAGTTATTCTTATTAGTTGCCATAAAAAAATATTGTAACAGGG
CGTAAATACTTTTTAGGAAAAGATTTATAACGTTTTAATGTGAGGTTCAT
CCAAGTTTAAAAGATCGTTATCTTTGCAAATTAAAGACAGGCTTAGCGGT
CCCCGTGACTGTATGGAACTGTTGGCGACTGGACACGATACCAGCGATGT
GTACACCATCTACCCTGATGGGGGAGGGAAAAGTCCTGTTCACGTCTACT
GTGACATGGACACTGACGGGGGTGGATGGACGGTA

Coding sequence (CDS) from alignment at Sc0000027:2151320..2152154+

>transcript:BL96712_cuf0 ID=transcript:BL96712_cuf0|Name=transcript:BL96712_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=516bp|location=Sequence derived from alignment at Sc0000027:2151320..2152154+ (Branchiostoma lanceolatum)
CTGTATTACACATGGCAAGGGTTTGTCACCAAGAAGTTGTGCACAACAGC
TAGCGATATGGCTCTTCTTTCAATTCTGGTTTTCGCACTCCTGCGATATT
CCGCCGCAAATGTGACAGCGGGTCTGAATGAAATCGAAGTGAGTGAGGCA
GGGATATCTACTGGGTCTTGCCAGGCCCTTGAGTACCTGCTTCTGTACAC
CGGTCGCCTGGAGAGAGATATTGAAGAACTGAGGAACAAAACTGACGCCT
TGGACAAGCAGTGTTGTACTGGACAAACTGCGATATCGATGGCTGGTCTG
CAGACTGTGGTTAACGACCAGGCCGCCACCATCCAACAACTGCAAAGTAT
GCTGAACCAACTATCAGACAGGCTTAGCGGTCCCCGTGACTGTATGGAAC
TGTTGGCGACTGGACACGATACCAGCGATGTGTACACCATCTACCCTGAT
GGGGGAGGGAAAAGTCCTGTTCACGTCTACTGTGACATGGACACTGACGG
GGGTGGATGGACGGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96712gene:BL96712Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96712_cuf0-E1BL96712_cuf0-E1-1564476830-168309Branchiostoma lanceolatumexon
BL96712_cuf0-E2BL96712_cuf0-E2-1564476830-168311Branchiostoma lanceolatumexon
BL96712_cuf0-E3BL96712_cuf0-E3-1564476830-168313Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96712_cuf0transcript:BL96712_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000027genomeSc0000027:2151320..2152154 +
Properties
Property NameValue
Transcript idBL96712_cuf0
Biotypeprotein_coding