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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96756_cuf0 >transcript:BL96756_cuf0-protein ID=transcript:BL96756_cuf0-protein|Name=transcript:BL96756_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=337bp
PAMCSYTAAGTGGTINCGVGNPLKADSTVVLQLRFLAANLNGSRSFLDFP
VFANSSTPDDMSTTADNQVVFSAQVVVEAEVTVKGASLPRDMWLDSTFVR
GEERGQDRPADNLDTDVEAEPVISQIKHVYEVRNHGPSDVGQTIATVLWP
STTEDRSVTVAVPEVSLKSQQGYCLVDNATTLMCGNVGDCYTISCIVNEL
KSGDGFVLEITSDIEDVQLSSVGNTTQDRLVSSVRVVVMDMPYRISPTAL
PTAETNVTTTIILPRPITRKKGVKAWIIASAALSGLLLLVAIVLILYRLG
FFDRKKVSKEDDVFDAQDKDLDSGIQEDEDGSTLKGP Run BLAST on NCBI mRNA from alignment at Sc0000053:111945..116480- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96756_cuf0 ID=transcript:BL96756_cuf0|Name=transcript:BL96756_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4536bp|location=Sequence derived from alignment at Sc0000053:111945..116480- (Branchiostoma lanceolatum)
CCCTGCCATGTGCAGCTACACTGCAGCAGGGACGGGCGGAACCATTAACT
GCGGGGTGGGGAATCCGCTCAAGGCAGACTCCACGGTACGTAACTACAAG
CTTCCGTCACGTTTTCAAAAATATGATGAACGAAAGTACTGTTTATTTGG
ACGATCCTAATACGGTAACTATAAGCTCGCGTATGCGTCCACCTAGGGCA
CTTTGCACATGACCTATTTTAAGGCAGAACACACTGTATTTGGACTCATT
CGAAAAGGGATCTTATAATTTGCTGTTCAACGTCTTTTGATCCTATCTTA
AGGCAACAATTTATACCTTAATGTACAATACAGCTGTGTATTGATTTTAC
AGGTAGTTTTGCAGTTACGTTTCCTAGCCGCGAACCTTAACGGGAGCCGT
AGCTTTTTGGACTTTCCTGTCTTCGCCAACAGGTATGTAGACCTTTTTAA
AAGTAAGTAGAAGTACTAGTAAATTAGATCTAAACTCTGTTTCGACACAG
CGAAAAAAAACCGAAATTTTGCGTCCATACTGCAATCTTCTTAATTGGAT
TAAAAACCACATTCAACACATGCCTTAATCAAACCTGTCGCCAGCAACAT
CGTACTGTACATAAACTGTCTCGTACTTGGAGGAGTTTGAGGAGTGCTTG
GATATGGCAGGTGGACCCTGTAGGTAGCTCATTTCAGTTAAAGGAAACTA
TCTTGTACAGACGTCAAAATAAACAGTCGTTTTCCTTGCCTACTCCAGCT
CAACACCAGACGACATGAGTACAACTGCGGACAACCAAGTCGTCTTTTCT
GCACAAGTCGTGGTCGAAGCTGAAGTTACAGTTAAAGGGTAATACATGTA
TTCTGTTTCAAAAATAATTCTGATCGTTCAAATGAGTTGTTTGTATTGCA
TACCTAACACACCAGGCTGGTACTGAACAGTAAAAGCTGCATATCCGGAC
AGATTTATTTTATCACTCACACCGGGATGGACCGCTACTCTTGTCGGGTA
GCTTGAGGTGCGGCTGTCCGAGGGACGTCCCTAGCCGAAGCAAGTGAGGG
AACAATATCGAGACCTACTACCACCATGTCAATGATTCTGATAACAATGT
GCCCTGTATTGCAGAGCGTCCCTTCCCAGAGACATGTGGCTTGATAGCAC
CTTCGTTCGGGGAGAAGAACGTGGCCAAGACAGACCAGCTGACAACTTAG
ACACTGATGTAGAGGCAGAACCTGTTATTTCTCAAATAAAACACGTTTAC
GAGGTACGTACTTGTTTATTCTTACAAATAAGACGTGAAATTCCTCGAAT
TTGACTACGCATCTCCGTAAATATTTGTCTTACTTAAGGCTATTGTACTT
ATGCTGGCTGACAATTTTGCTAAAAACTTGCAGTCCTTTGGTAAGTAATA
AAACGAGAGTCTCTAGCTAGACGTTATATTTCACCAGAATAATCACGAAG
TTCGTTATGTCACATTTACTGTTCAGGTTAGGAACCACGGCCCAAGTGAT
GTCGGTCAGACCATCGCCACTGTCCTGTGGCCTTCCACAACAGAGGACAG
AAGCGTAACTGTAGCGGTCCCAGAGGTTTCTTTGAAAAGCCAACAGGGTT
ACTGTCTTGTTGACAACGCTACAACTCTGGTGAGTTGGTATTCTATCTTA
TGTCACTGTTAGTGAATCAATACATCAATCGATCAATCAGTTTTTTTTAG
AACCTGGCCATATTCTCATTTCGTTTATTCATTAAATTATATCGTTTTTT
GTTTGCTTGCAATGCTGTTTTCAGGAATGAATCCGCAATGTTCAAACAGA
ATACATTATGCACGCGATGCCTTAGTGGTGTTTTATGTTACATGTTTAAT
TATGTTAATTTCAGATGTGTGGAAATGTTGGCGACTGTTACACCATAAGC
TGTATAGTCAATGAGTTGAAGAGTGGAGACGGCTTCGTTCTGGAGATCAC
GTCGGACATAGAAGACGTACAGGTTAGTTTTCAGTTAAAACACACAGCAA
GACATGTATATGACATATGGTTGAACATCTTATTGATATGATCATTCATT
CAGACCCTTGTAGTGCCTAGCGGCACTTTTGCACACAGGGTAGCAAGTTT
CCTTGCTATTTCAGTAACAGGGTATATATGTACAGCTGCTAGCCCTTTAA
CATGCTCGAGGCACCTCCTCGAACACGGGACCCTCATTCTACAAAAGACG
GGCTGCCTACCCGAGATGCCCCGCCCAGGATTGAACCAGTGTTTCACAGT
TAGCAATGTATTGGAATCATGAGTTCAACTGTGAGGCTGCCACCAGTTTG
GAAGCTTAGGGAACAAAACAAAACAAAGTAAAGGAAATATATTTTGCTGT
AATGCAGTGTTAATGTTATTTTCGTTGTCGAAAAGCCTCGTGTGTATCTA
GAATGGTACATTTTCTTTGATTTCTACAGCTTTCGTCGGTTGGCAACACG
ACCCAGGACCGGTTGGTGTCGTCAGTGCGGGTGGTGGTTATGGACATGCC
GTACCGCATCAGCCCCACCGCGCTCCCAACGGCCGAAACTAACGTAATAC
ATGTATTTAGTATCTCATTAGCGTAATGCTTTTCGTTGTCACGCCCTGTT
TCTAATCCCTGAACAGTTTCAACAGGTTGGTAAATCACTGAATAAAAAGG
CTCTTTGTACTCAGTCAACCGAGTCTTTTATTACACCGACACTTAGCTAA
TTAGGTGACCGTCTGTCACCTTCCTCAGGGAACTCTGACTGGTTCACATT
GCACTGCAGCAAGGGTGTCGCTGTTTACAAATTCCTTCTATAAATGCTTT
ATTATTGTTTTATTTTTGTTTGCAATCGTGTTTTCAAAGAACAAGACGGT
AGAATAGATTGGTGAAAGCTATTTTTCTTTCATCAAGTAAGTGCTTTATA
CAAGAACTATTGTGTAGTTGAACGTTGACAACACCACATTTAGCTTCCTT
GGGCTAGTATTAGCATCATTTGTAGTTTTGTTCACAATGTTGCTAAACAG
TTTTGTTTACTATCTATAGGTTACCACAACCATCATATTACCAAGACCAA
TCACCAGAAAGAAGGGAGTGAAAGCCTGGATAATCGCGAGTGCCGCGCTG
AGCGGTCTACTGCTACTGGTCGCCATTGTGCTGATTCTCTATCGGGTAAG
TACAATAAAAATGTCAACGAATCACGTAATTAACGTTACAGCTATATCTC
AATATAGCTCGATTGATATCCATGTTATGAAAGTACGTTTTTATCATATA
CTGTATTCCATTGCAGCTTGGTTTCTTCGATCGAAAGAAGGTGTCCAAAG
AAGATGACGTATTTGACGCTCAAGACAAAGATCTGGACAGTGGCATCCAG
GAGGACGAAGACGGATCTACACTCAAGGGGCCTTGACGAAAACAAAGCAT
GCAAAATCGGAAATAATCAGAATATTTCATAGGTATCCCCTAGATTTCCA
TTGTAAATATTTCCTTGCCTTTTGTCGGTTGTTTATTTGTTTATAAACAA
GTACATATTGTTAGAAACAAGTGAATTTTGATTGCGGAATAGATGGAGCG
AAGAATTCTTCAAACCTTATTGTCAAAAACAGATGGAAGAACTCTTTTTC
TTATCCTATTCAACGTTTTTACTCAATTTCCATATTACTGAAGCAGGTAG
GTGCTGACAGCTAAACTGGTGTCCTTTTTTGAATTTATTTTCTTGTATTC
TCTTCTGTGCAAAGAACGCTATATATCTTGAGAGATTTAGAAGATATCTA
GATATCGATGAACGAGTCACTAAAATGTAAGCTAAGTTCGCCTTCATGTT
GATGTTCGTTGTCAACGTGACGAGAAAAATCATAGTGATAATCGGTGAAA
ATAGGCTGGGCCTGTTATAAATGTACAGAAAAGTGTATATTTTGTATGGA
CGCATATATGAACTATAATGTGGTGTTTAACACTGTTCTTAGAATACTAA
TTATGTACTATATTGTGTATTTCAATCCAGCAGTAAAGCATACCGCGTCT
GAAGGAACTGTTACATTACTTCAGTTTCAGCATAGAGAAACCTGACCCAG
ACGCAATAAATTTGAGTCATAGTACTTCAAATAATGGTGATAATATCTTT
ATTTCTAATACCTCTTAATAACACAGAATGGACAAACATAACCTTTCAGG
TCTATACATTTCTTAAAGGTCATTATGTCTATAATAAACATTTGCGTGTG
TCTAGCTTTATCTATATTAATCATTTTGTATGTACATTTTCATTCGACGT
GGAATTGTAGATACATTTCATGCTATGTCTAGTCACTATAATTTTGAAGA
ACGTTCGATTTACAACGTAACGATGTAAAATAAAGTCCATTTTTAATGGC
GTTCGTTACGTAATTTTTTTTCTACACTTTCATAATCATTTTATATGCTA
CCGTTACAAATAGATTTTGTGTCAAAAACATGCGTCTTCGTAGGTTTCTT
TGCTGTTTATACTTTCATTTCAATTGTCACCTGATATCTAGGATAAGAAA
ATTGACACAGGAGAAGTTTTTTTTTAATCATTTAAC Coding sequence (CDS) from alignment at Sc0000053:111945..116480- >transcript:BL96756_cuf0 ID=transcript:BL96756_cuf0|Name=transcript:BL96756_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1014bp|location=Sequence derived from alignment at Sc0000053:111945..116480- (Branchiostoma lanceolatum)
CCTGCCATGTGCAGCTACACTGCAGCAGGGACGGGCGGAACCATTAACTG
CGGGGTGGGGAATCCGCTCAAGGCAGACTCCACGGTAGTTTTGCAGTTAC
GTTTCCTAGCCGCGAACCTTAACGGGAGCCGTAGCTTTTTGGACTTTCCT
GTCTTCGCCAACAGCTCAACACCAGACGACATGAGTACAACTGCGGACAA
CCAAGTCGTCTTTTCTGCACAAGTCGTGGTCGAAGCTGAAGTTACAGTTA
AAGGAGCGTCCCTTCCCAGAGACATGTGGCTTGATAGCACCTTCGTTCGG
GGAGAAGAACGTGGCCAAGACAGACCAGCTGACAACTTAGACACTGATGT
AGAGGCAGAACCTGTTATTTCTCAAATAAAACACGTTTACGAGGTTAGGA
ACCACGGCCCAAGTGATGTCGGTCAGACCATCGCCACTGTCCTGTGGCCT
TCCACAACAGAGGACAGAAGCGTAACTGTAGCGGTCCCAGAGGTTTCTTT
GAAAAGCCAACAGGGTTACTGTCTTGTTGACAACGCTACAACTCTGATGT
GTGGAAATGTTGGCGACTGTTACACCATAAGCTGTATAGTCAATGAGTTG
AAGAGTGGAGACGGCTTCGTTCTGGAGATCACGTCGGACATAGAAGACGT
ACAGCTTTCGTCGGTTGGCAACACGACCCAGGACCGGTTGGTGTCGTCAG
TGCGGGTGGTGGTTATGGACATGCCGTACCGCATCAGCCCCACCGCGCTC
CCAACGGCCGAAACTAACGTTACCACAACCATCATATTACCAAGACCAAT
CACCAGAAAGAAGGGAGTGAAAGCCTGGATAATCGCGAGTGCCGCGCTGA
GCGGTCTACTGCTACTGGTCGCCATTGTGCTGATTCTCTATCGGCTTGGT
TTCTTCGATCGAAAGAAGGTGTCCAAAGAAGATGACGTATTTGACGCTCA
AGACAAAGATCTGGACAGTGGCATCCAGGAGGACGAAGACGGATCTACAC
TCAAGGGGCCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000053 | genome | Sc0000053:111945..116480 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96756_cuf0 |
| Biotype | protein_coding |
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