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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96767_cuf4 >transcript:BL96767_cuf4-protein ID=transcript:BL96767_cuf4-protein|Name=transcript:BL96767_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=383bp
PFWADSAMGWGYPSKVWYYPYTPGTPNYDEVFSVASENIRNHFGVETFDP
TFVLIVTWENMAMAGEVARNNINLKTNTFQAALVTDNVHTYLGTYYADGG
MRWDPQITPGNLVGGKWPAFVGMVTKDPDGGILVDEAEGSRAKTVFPNGT
KDCSGPNVYCMDEKVSPTTNRTGIRVVKVDDNPADYVNPRLWCADWYKRE
PDPFMYSSVISCPLTRTHADLDLRFRQLANTNDGRRFCFEQRDNSGFTDG
GNNVCCYRRNGAFIFNSVWAGNLHRYAANTQEYQDSDLLPRQHCCQDTGS
SYCRMYLSKRPMQHNAGYEPPKISAGAGDPHLTTLDGLSYSFNGHGEYLM
ANTTDNAPRGFLMQGRTALAEVEEGKTPQATVF Run BLAST on NCBI mRNA from alignment at Sc0000166:299412..306306+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96767_cuf4 ID=transcript:BL96767_cuf4|Name=transcript:BL96767_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=6895bp|location=Sequence derived from alignment at Sc0000166:299412..306306+ (Branchiostoma lanceolatum)
ACCGTTCTGGGCCGACAGTGCCATGGGGTGGGGGTACCCGTCAAAGGTAC
GTTTGCCATCGGTTACATTACATAGTATTAGATGGCTAGCTATGTCATGT
ACATGTACATGTACATATAAAGTATGGTTAGCATACTGAAACACTGTCCT
TTTCAACAGGACCTTGACCATGGAGCCACTGAAAAATTGCCAAATCACAC
GTCGGTCATCAAACCTACCAAAACAGTTGCCTCTGTGGAAACAGATCTGT
TTCAAACCAGTTGAAAATTTGACCATACATAGCGAATATCAAGAAGAGAA
GAGTGGGGATGACCCTATGTGCCTGGCTATAAAAGCTAGCTGTTAAAGCC
ATATTGTGCTGCAGAGAAAGCATTACACTTCGTCTCAAACTTTATACTTT
GAGTTTGATGGAAGGAAAAAAGAGTAGATCGTAGGGAATTATGCTGAGGA
AGCGACCTTCGACCTCCGCTTGTGCCGTATTCATACTGCGGCATCCGCCG
TTCTGAACGGCTGGGCTCGCCTCCCGCTCAACGTTCCGTCGGAAACTTTT
CCCCTCTCGAGCTTGCACGAAGCATTTCAACCTACCGTGCGGTGTCCCCC
AACCACCGAGGCACACGAATCTGCCAAGAAACTTGTGGGTTGCCGTTCCC
GTTGGGCCCGACGCGGACTCAGACAGCAGGGCCGCGGTGTGCCAGTACAG
CACCGTGCATGGGCCGCCAGTAACGTTGCCCACCTGGATTCGCAGTTCTA
AGCGAGAGGCTCCACCCGACCCTGAGTCTCTACACTGTTCGTAATCGTTG
GCGACGTCCTGCAGCGAGTTTTCTGACAATTGAATGCTCCCCATATGTGA
CTGCAGAACAGTCCATTTAATTTTTGGTGCTCAACAGCCTTCCGTCTGTG
AAAGATTTCTTTTTTAATTGTTGTCTGAATATTGTACACAGTCACTGCAC
TGATGAGTGTTTTTTCATTGTCTCCAGGTGTGGTACTACCCCTACACCCC
CGGCACCCCGAACTATGACGAGGTGTTCAGCGTGGCGTCAGAAAACATCC
GGAATCACTTCGGAGTGGAGACCTTTGACCCCACGTTTGTCCTCATCGTG
ACCTGGGAGAACATGGCAATGGCAGGGGAGGTCGCCAGAAACAACATCAA
CCTCAAGGTAATGTCAATTTGATATTTATTTTGTGGTATCAATGTGCAGT
AGCAGGGGAAAGAGTAGAATGATTTTGCAATGTTTTAAGGTTGCCGTGGA
AACAATGCAGAATCTGCAGTACAGCACAAATACACGCAAATGCAAAACTC
AAAACACAAACGTGGGTTGTGCCTAAGATACGAAACATTGTCAAGAAAAA
AAGACTACATGATAATCTTTTTTTATATTCTACACTAGAAAACTGTCAGA
AGAATCAGGATTCAGGACCAAGATTGTTCTAGGCTCTCGAATCTAGTCTA
AGGCTGTAGCTTTGGAAAAGGAATTTGACACACATTTCTTTGCTTGACTT
GCGTGAAAATGAGCATGACATATGCCTTATGGTTTTAGGGGCAGATGGGT
CTGCTTTCCATCCTTCTCTTACTAGACATACAGAATCTGATATAAAATCC
CCCCCACTGCCTTTATGGTGCCTTTATCCTAACATTTAATGGTAAAACTA
ACATCTAACATTTCTGTTTCTTCTCTCCTAACAAAGCCGGCAAACGGAGA
AACTCTGGAAGATGTACAGGTTTGAAATCTAACAAAACTAACTTGTTGTA
ATCACTTTTGAATGACTCAGTTTTCCTGGTCTTCTTTCTGCTAACAAAAC
TTTACTGCATGATCTCACTTTGTAATACTTAAAGAATGCGCTTTGGGAGC
GTTTGTGCTTATCAATCAAGGCCATACAAATGAAATTCCTCGGTTCTCAG
ATTTAAAAACATAATTCTTAACCTGAGATTTTTGTGTCGAAACATGAAAA
AAGAGTCTCAGGGTGGAGTCTTTGCCTTCAAGTTGGTAAACACAGTTTTA
AGGGAGTGAATATTCTGATACTTGTATTCAAACGTTCCTTCCATCCTACT
GTCCTAATTGCATCCTCTTGCTGACTTCTTTTGAAATCACTGAGAACCAA
GGATATATAAAAGTGTGGCCTTTTTCTTTCATGACACTATTGCATGCTCT
CACTATGACTGGAGTCTCCTTGATGAATGTGCTTGTGAACTTTGCCCTCG
TCAATGTTCAAATCTTTCCAACTTCCTGTCTCTGTTTCTCCCTGGATTGG
ATTTTTCTGCTTTCCTGAAGGCATCAAACGGAACGCATGTCTCACATAAC
AGTAACTTAAAGGTAATGTCATGCCAAGAGTTGCTCTTCCTTTTTTCATG
TCTTTCTTCACAAGTCTGCTGATTCCTTTAGACTCAAAACTAACACACTC
AGTGCCGTGCAGTGCAAGTCATTTATTTGTACCACATGAACAATTGCACT
GTTACAGTAGTGCAGTTTAAGAAGGTCTGCACTACACTTATTATACTACC
TTCAAGGATTTACGAGAATGGTCGAATCTACACCAAAGTTTTAAGTCTGT
TTAGAAGAGAGACAAATCAGAACTAGATCTCTTACGTACACCTATCCACA
GGTCGACAAGTTTCAAGCTGCCCAGCTGACCGACAATAACTCGTTCTCAT
TTAAATGTACAAATTGCTGTGGCCAGCCTGAATGATTTTTAGGCCACCCA
TTGCTATAACTTCTTCTAAGTCAAAACCCATAAGTATTGCTGTGGTGCAT
TTTTCGTGAAACATGATAGGCATCGATGGCTCATATCAAATCGTAAAGGC
TGACCACAGTAATTTGTACAGTCATTTAAATGAGAACGAGCGAATGTCTT
CACATTACTGCAGAACTTACACGCCCCTGAGGAAAATCTAAACTACCAAA
CTATATCAGATATTATCTATCATCTATCTCTCACAGACGAACACGTTCCA
AGCGGCGCTGGTGACCGATAACGTCCACACGTACCTGGGCACGTACTACG
CGGACGGCGGGATGAGGTGGGACCCGCAGATCACCCCCGGCAACCTGGTG
GGCGGGAAATGGCCCGCCTTCGTGGGGATGGTCACCAAGGATCCGGACGG
AGGGATTCTTGTAGACGAGGCGGAAGGCTCCAGGTTTGTTTGTTTGTTTG
TTTGTTTATTGCTTGCCGATGATGGGGGGTTCTCATGGACAATTTTTTAC
TGCAAATGAAAGGTTACATTGCAGAACTTTCAGAAGACACCCATTTTCCT
TCCTAAGTGTGATTGAATTCCTTGCATCACTTGAAAGCATGGCTAAAAAT
GTTGACTTCCAGTTGTGTTCAGCACCAAGGACAGTTCTTCTTTAAACCAT
TGCAAGGCAAAGACTGTTTACTAATGGTACCTTTAGACTGCTCGGTGCCC
AATGTGTACTGTTAAAATGATGATAATAAGATCATAGTGACTGTAAAGTT
TTTAACCATTGCAGGAAGAGGCCTGTGTTTTTGACCATTCGATGGCTAAG
ACTATGTTCATTAACCATTGCAGGACTAAGACAGTGTTTGTTAACCATTG
CAGGGCTAATCTGTATCTGTATTTGTATCTATATAGCAGATGTAACTGCC
ATTTGGCGTAACACACCAGCTTCGCAGGCACACGGCGTGGCAGCAGCTGG
TTATATTACACCGAACGACCTGTCACGTCTAACCTTCGCATATCTAACTG
CATGCATTGTTTAAAGCTATCTAATGAGGATGCTTCCACTAAGAAAGTGT
TTGTTAACCATTGCAAGGCTAAGACAGTGTTTGTTTCAGAGCGAAGAATG
TCTTTCTTAACCATTCCATTGTTGAGACTATGTTTATTAACCATTGCAGG
GCAAAGACTATGTTTGTTAACCATTGCAGGACTAAGCCTGCTCAGGGCCT
AAATGTGTTCTGTATGGACATGAATATTGCAATTTTGCCTTCTGTTAATT
AAGGGTTTATAACCATTCCATTGTTGAGACTATGTTCATAAACCATTGCA
GGACTAAGACAATGTTTGTTAATCATTTCAGGGCTAAGACAGTGTTTCCA
AACGGCACCAAAGACTGCTCGGGACCTAACGTGTACTGTATGGATGAGAA
AGTCTCCCCCACCACCAACCGGACGGGCATCAGGGTGGTGAAGGTGGACG
ACAACCCGGCCGACTATGTCAACCCCAGACTCTGGTGCGCAGACTGGTAC
AAGGTTAGTGTCAGGATGTTTTGTTTTAGAGCATAACTGGCAGAAGAAAA
AGCAATTTTTGATCAACCAGTTCTCTTCTGTTAAATAATCATTGTTTTAT
TTGATGAGTCTCTTGCAAAGGAACCAAGAGAGTGTTAAGTACTAGTTAGA
TGCTCTTGTAAGTAAAGAACAATATGCATGATACTATGTTCTTCAATTGT
CCCATATTGTACTCTTGTATCAAATGTATAAAATCATTCCTACCGTTTTT
AACCTACAACAGTTTTACTGTATAACTGCTGAACAGACAGCTTTATATGT
CTTTTACAATCAGAGAATCTAGATGTGAAGTTGATGCCTTCTGCAGTACT
GTGATCTCTTGGGACTGGTGACGGCTGTGCCTAGAGCGACGTAGATAAGA
AGACCTTACATTGATAAACTCACATTGATGTATGCTTTACTGCCCCCCTC
CCCCCATACCACCCCCCTCCCCCTGCACAGAGAGAGCCGGACCCTTTCAT
GTACTCCAGCGTGATATCGTGCCCTCTGACCCGAACCCACGCAGACCTGG
ACCTGCGGTTCCGCCAGCTCGCAAACACCAATGACGGTCGGCGGTTCTGC
TTCGAGCAGAGAGACAACTCAGGATTCACTGATGGTGAGGAAAACTGTCG
ACTTTTTTCATCTGTTACTAAATTTTGTTTGTTACCTCCACGAAAAATGG
AGGTATTGCTTTTGGTGTGTCCGTCTGTGTGGTTGGGTGTTAGGATTCAC
TGACAGTGAGAAAAATTCTCGACTCGTTTCATCTGTCACTTTATTTTGTT
TGTTTTTGTGTAGTGTATTGTTTTCCATATACTTTTATGTTTATCTGTAC
ATTTTTTTAATAGAATATCATGAAAAAAGTTGGTTTGTTACCTCCATGAA
GAATTGAGGTATTGTTTTTGGCCTGTCTGTCTGTGGTTTTGCATGTCTGT
GTGTGTTTCCTAATATTGGTGTTGGTAAGACAAGAATCAAGGTCAAGTTT
GGGCTCCCTGGTGTGTGACCTTGGTACTGCAGCAGAACTTCCTGTTTTTG
TGTCAGTTGTCANTTCCAGTTTTTGTATCAGTTGTCATAGATTTGGTTTT
GTTTCTTCTGCAAAGCCGGTAAACCACTTTAGACATTACAGGTTTTTTAC
AGTAAGTACAAGCTGCGTAAAACTGGACTGAAGTTGCTTGTTTGTTTATT
TATTTGTTTTTGTTTGCAGGAGGAAACAACGTCTGCTGCTATCGTCGCAA
CGGTGCCTTCATCTTCAACTCAGTCTGGGCAGGAAACCTGCACCGATACG
CTGCGGTCAGTCTTACAGCAAAACAAACAAACAAAAACAACCAGACAAAC
AACATTTCTCATTCAAACTTACAGATAGCAAAACCTAACCCTCAACCTAC
ATAATACCCCACAGTTTATATGTAGCCTTACAAGATTTCTCGTTCAAACT
GACATGTTAGAGCGCAAAACTTGTCCAGACTTAGAAAAGACTACAGAATA
ACAAACTAGCTTTGAGGTCTACCAAAAGGTGTTTGAGTAATCAACTGAGT
TTTAAAGAATTTGTTCTTTCATATAATTACAAAAGTCAAAGCCTTTTATT
CTACACCATATTTGTTGTGACAGCTTTTGTGGAGTATAAGCACTTGTCAT
CAATTTCCTGCAGGGAATTTAGAGCAAATCTTCTAATTTTTTTGTCTCTC
TGATATGAGAGGATCTTAAATGGACACATGGTGTCTTACAACCATACAGA
TTGCAGTACTTGACCAGACTTAGCATTAATAGAAAAGACTAGAAAACAGC
TACAAGTTTCAGTATAATCAACCAGTTCTGAAGTTGTAAAAATTTTTCTC
TTCTATAAAAACAGTCTGTTAAGCCTAAGTGCTTGTCATCAATTACATGT
AGGTACAAATGTTTACTCTTGGTTACTACATGTATCAGCCTTTTTTCCTT
CTCTGTGATCACCCTAAAATTTGATGCTATGGTGTTTTTGTTATCACTTT
TTGTTAAAAAAATATGATTTGTTTTGATTTGCAACTACAGAACACCCAAG
AGTACCAGGACTCGGACCTGTTGCCACGACAACACTGTTGCCAGGATACG
GGTAGCTCCTACTGTCGGATGTACCTCAGCAAGCGGCCCATGCAGCACAA
CGCTGGGTACGAGCCACCAAAGATCAGTAAGTAATCCTTGGTGTGTTTGT
TTGTAGCACATAGAGTTTGAAAAAAGTCAGTCATTTCTTCTGCCTTTATA
CGAAAGCCCAGAGTTACACAGAGAGAGTGGCACCAACACTTTCCGTATCA
GCCCCAAAGCACTGAAGTATGAAGGCCCATAACGACACAACAGTAGAAAA
GCGTCCTCTTTCTCATCCACAATTCTTAAAGAAGCGCATTTCTTCTGCGT
TCCTTCAGGTGGTACAGGCGATAATCGCGATTATCGATTAAAGAAACACA
TTTTTTACAAATATTTTAAAAATTGAAAAAAACACACTTAATTTTTTTCT
TCTGCGTTCCTTCAGGTGCTGGGGCAGGTGACCCTCACCTGACGACCTTA
GACGGCCTGTCCTACTCCTTCAACGGGCACGGGGAGTACCTGATGGCCAA
CACGACGGACAACGCCCCTCGCGGGTTCCTCATGCAGGGCAGGACAGCGC
TGGCCGAGGTAGAGGAGGGGAAAACTCCACAGGCTACCGTCTTCA Coding sequence (CDS) from alignment at Sc0000166:299412..306306+ >transcript:BL96767_cuf4 ID=transcript:BL96767_cuf4|Name=transcript:BL96767_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1149bp|location=Sequence derived from alignment at Sc0000166:299412..306306+ (Branchiostoma lanceolatum)
CCGTTCTGGGCCGACAGTGCCATGGGGTGGGGGTACCCGTCAAAGGTGTG
GTACTACCCCTACACCCCCGGCACCCCGAACTATGACGAGGTGTTCAGCG
TGGCGTCAGAAAACATCCGGAATCACTTCGGAGTGGAGACCTTTGACCCC
ACGTTTGTCCTCATCGTGACCTGGGAGAACATGGCAATGGCAGGGGAGGT
CGCCAGAAACAACATCAACCTCAAGACGAACACGTTCCAAGCGGCGCTGG
TGACCGATAACGTCCACACGTACCTGGGCACGTACTACGCGGACGGCGGG
ATGAGGTGGGACCCGCAGATCACCCCCGGCAACCTGGTGGGCGGGAAATG
GCCCGCCTTCGTGGGGATGGTCACCAAGGATCCGGACGGAGGGATTCTTG
TAGACGAGGCGGAAGGCTCCAGGGCTAAGACAGTGTTTCCAAACGGCACC
AAAGACTGCTCGGGACCTAACGTGTACTGTATGGATGAGAAAGTCTCCCC
CACCACCAACCGGACGGGCATCAGGGTGGTGAAGGTGGACGACAACCCGG
CCGACTATGTCAACCCCAGACTCTGGTGCGCAGACTGGTACAAGAGAGAG
CCGGACCCTTTCATGTACTCCAGCGTGATATCGTGCCCTCTGACCCGAAC
CCACGCAGACCTGGACCTGCGGTTCCGCCAGCTCGCAAACACCAATGACG
GTCGGCGGTTCTGCTTCGAGCAGAGAGACAACTCAGGATTCACTGATGGA
GGAAACAACGTCTGCTGCTATCGTCGCAACGGTGCCTTCATCTTCAACTC
AGTCTGGGCAGGAAACCTGCACCGATACGCTGCGAACACCCAAGAGTACC
AGGACTCGGACCTGTTGCCACGACAACACTGTTGCCAGGATACGGGTAGC
TCCTACTGTCGGATGTACCTCAGCAAGCGGCCCATGCAGCACAACGCTGG
GTACGAGCCACCAAAGATCAGTGCTGGGGCAGGTGACCCTCACCTGACGA
CCTTAGACGGCCTGTCCTACTCCTTCAACGGGCACGGGGAGTACCTGATG
GCCAACACGACGGACAACGCCCCTCGCGGGTTCCTCATGCAGGGCAGGAC
AGCGCTGGCCGAGGTAGAGGAGGGGAAAACTCCACAGGCTACCGTCTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000166 | genome | Sc0000166:299412..306306 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96767_cuf4 |
| Biotype | protein_coding |
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