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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96780_cuf3 >transcript:BL96780_cuf3-protein ID=transcript:BL96780_cuf3-protein|Name=transcript:BL96780_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=592bp
SFVTDQMGTSSTRGSSGNLRKITFPAPRRVSNYAGLGTPLSQDLMSFTLC
LHMRTDMSSYSHTSLVSYAVGSVQHANELLLFNDGGSGGRFELYVQNTKA
DLGALPVWDSGWHVICVTWRSSNGDWKLYADGAFRASGTGVNVGGKVRGG
GTWILAQDQDTVGGSFVESQAFSGELSQVNLWDRVLTPEEIGTDWSVFCN
HHGNVIDWATINIQVVGQATSDQYRCQVTSTPASVERPRTTMTSLVTDQM
GTPAPQGSPDCPQDYQPFQGICYKAYNNAVTFLQSVRACGADGGTLAMPR
DQKTNDFLITLKNSVDRKSPFRFGLHDRIKENVWRWMDGQELGDFTDWGR
GEPNDASLGPQGEDCVEFYPPNGNKWNDRACSDRRKFICQADTTEHPGYT
PVGQGAYINTYLKVFAQPKTYEDAKQACALDGGHLANVKTQALHDFLLTK
IQEVDGSRDYWIGLNDMTVENTWTWSDGTPVSDCDFTNWAPGEPNNAGST
GDQDCGQLWKDKGFQWDDDMCGNQKYFICQIEVPVKKRPVDDQKLAPVAT
RCITASATRPSTPRRTFATRLRHVQLTEGPSPCQRTPTLTPS Run BLAST on NCBI mRNA from alignment at Sc0000201:196363..203986+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96780_cuf3 ID=transcript:BL96780_cuf3|Name=transcript:BL96780_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=7624bp|location=Sequence derived from alignment at Sc0000201:196363..203986+ (Branchiostoma lanceolatum)
GTCATTCGTGACCGACCAGATGGGGACGTCATCAACACGAGGGTCTTCAG
GTAACGCCTACCCCAGTTACGTCATCATCGGAATAACTTCTCGTCATAAG
ACTGCACTCTAAACTAATAGTTTAGTAATTCACTTAGTGTAAGCACTGTC
CTTGTACCAACTTGCAAGATATGCTTTGTTGTTCACCTTGTAGTGCACGT
AGGCCAGCAATCTGTAGCAGGGTGCATTTTTACAAGGATGCTAGTAGCCC
TTCGCCTTTAACGCACTCGAGGCACCTCCCCAAACACGGGACCCCTATTT
TGCGTCCCTTCCGAAAGACGGGTGCAGCCCCAATCGAGATGTCCTGTCCC
AGGATTTGAACCGGGGTCTCCCAGTGATGCTTAGGTCACATTTGGAAAAA
GGGGCCCTGCCGGGTAGTTCCCGGGCCGTTTAATTGTGACCACGACAGCC
GGTGCCCCCCGGACGTCAGATCTCGGCCGGGGCTACATCCCCGACGGGCA
CCGGCGCAATTGTGACCTAAGCATGATCAACCAATTGGAACCAGGAGCTC
AGCTGTGAGGCTGCTTCAGGAACATCCCAATCCTGACATCCATATTTAGA
TTATGTTCGACTCATAATGAGTCATATCGGCTGATAAATGTTGTTACGTG
CCTTTTTTTTCAGGTAACTTGCGTAAGATAACCTTCCCCGCCCCACGCCG
CGTCAGTAACTACGCCGGGCTGGGGACGCCACTGTCTCAGGACTTGATGA
GTTTTACTTTATGTCTGCACATGCGCACCGACATGAGTTCCTACAGTCAT
ACAAGTTTGGTCAGCTACGCTGTGGGAAGTGTCCAGCATGCTAATGAGCT
ACTTCTTTTCAACGATGGAGGTAGTGGCGGCCGTTTCGAAGTAAGTCTGC
AATGTCCTTCGATATACTAAACCTCTCGTATTCTAATTACCACTTAGTGG
ATGCAACGCCGATGCATGTCAAGTTCGTATAAGTTCCGTATCATTTTTTT
GTCATTAGAGTTATTAGACGGTCATAGAATTATCAACCAAGGATTGACGT
GTTCAAAATTCGTATTTTCCGAGAGCCATAGCAGAATGGAACTCGTTGTC
ATCAAATACTGTACGAACATCCTCACTAGATAGCTTTAAACAACGGTTGC
AGACAGATGTGCAAAGGCTATGTGTGACAGGCCGTTCGGTGTAATATAAC
CAGCTGCTCTCGCGCTGCGTGCCTGCGAAACTGGTGTGTTACGGCGAAGG
GCGGTTATACAGACTATATAGATACAGATACAGTTACAGATAGAATATTC
CATGCCGATTCATATACAAAAATACTTACAAGCAACTTATGTCATGTAGA
AAATAATACGGAGCTCATACGGACTTGATTTACGCACAAGTGTGACAGCC
CCCTTTTATAGCTCTTACCATTGCCTCTCATATCTGTTGATTCGCTAAAT
ATGCTAATTCTTAAGTCTTGTTGACACAGTAATGCTTCTAGCAATAAATC
CAGGTCGCAATTTCAAGAAAACTGTCAAGTTCATTGAACTATGTTTTTCA
GTTATACGTGCAAAATACGAAAGCTGACTTGGGTGCCTTGCCCGTTTGGG
ACAGCGGGTGGCACGTCATATGTGTTACCTGGCGCAGCAGTAACGGGGAT
TGGAAGCTCTACGCTGACGGCGCGTTTCGGGCTTCAGGCACGGGGGTCAA
CGTAGGAGGAAAAGTGCGCGGCGGCGGTACCTGGATCCTCGCGCAGGACC
AAGACACGGTCGGGGGATCCTTCGTAGAGTCTCAAGCGTTCAGCGGAGAG
CTGTCGCAGGTGAACCTCTGGGACCGCGTGTTGACTCCAGAGGAAATCGG
AACAGACTGGTCAGTGTTCTGTAATCACCATGGTAACGTGATTGACTGGG
CAACCATTAACATCCAAGTCGTGGGACAGGCCACCAGTGATCAGTATCGA
TGTCAAGTCACCTCGACACCCGCGTCCGGTGAGTCTATCCATGCTTTGTT
TGTGATATTCTTATTAAGGCCAATTCGTTAGGCTGACTTTCTCCTGTCCC
GCGGACAATGAAAACGATGCCAATATTCTTTAGTCATCTTTTTTTGCTCG
CTCGCATCAGTTTTGATACTACCTTGCCTCCGTTTTAATCAGTTTTGATA
CTGCCTTGCCACCGATATAGATATGCTTGGAGATTAGCTATATATACCGG
ATAAGGCTGTATTGCCGTGATGTTTGCTACGTGGTTGTATTCACATTGGA
AAATCAAATATCTTTGTCATGACTGATCATCATCTAAAAACTTGTTGTCA
TGTGGCAGTGCATTTCCATTCTTGAACCGTAGACTTTTCCCGGCTGGTGC
TGCACCGGTCGAAATTCCTGTCATTTATCACTATGACATTATAGTATTTT
TAAGTGATCATGCAGATGAGGCAGTCATTTGCATTATTGATATCTATTGA
TTTTTCTAATAGTATCTCTTTCATTTACAAATTCATTTCTCATGTTTGCA
AGTCCAACAATGGAACGCAGCAGATTTATAGAATCTCCTCATCAATTATG
TAAATTAGCTCATAACTTTGATGATTACTATGTTATATTGTCAATCATAA
CTTGAGCAATCTACATGACAAAGCCATGATAATTCATCAACCACTTATTG
AATTGATCTTGAAAGTATGAAACAAAGTCAGTCCCTGCAGTTCAAGGAAT
GGATCCTAGGGGACCGAAACCGACGTCAGCTCTTCACGAGTCCAAGAGCT
ATCTGTCATTAAAAAAATCGATGATTATAGCATGTCTAAAACACAAAATA
TCAAAGTCCTACTGTAGTACCTTATGAATCCGCTAGCGGGCCCATAATCT
AATCGTGTTCAATTTTACCAATCCTACCAACATACCATATATTGCAGTAG
AACGTCCTCGCACAACAATGACGTCACTCGTTACCGACCAGATGGGAACG
CCAGCACCACAGGGATCTCCAGGTAACCGGTACCTAATTCAGTTACGTCA
TCACCTGAACGAGCACAAATTATTGTCACAAGACTACACTCGAGCAGTGT
GTGAGTAAGTGGTTAAAGTACAATTGATGAGAGGTCCAGTCTGGAAACGC
AAGTTCCTCGATGGTTGAAGATTCTACTGTACCCTGCTTTCTACTCTATA
CTAATCTACCACCAATATTACTACGTACAAGGCACAACGACAAGAACATT
TAATCTAAATTTACTTAAAATTAGATGTTTGAATTGACCTTAATAGGTGT
TCATGTCTAATCATGATTTCCGCGGCTATCCGTTTTTTTTCCCACTCTTT
CCCAAAAGATTGTCCACAAGACTACCAACCATTCCAAGGCATCTGCTACA
AGGCGTACAACAACGCTGTCACTTTCCTACAGTCCGTCCGCGCGTGTGGT
GCAGACGGTGGGACACTCGCCATGCCTCGCGATCAGAAGACCAACGACTT
CCTGATCACGCTGAAGAACTCGGTCGATCGAAAATCCCCGTTTAGATTCG
GCCTTCACGACAGAATCAAGGAAAACGTCTGGAGGTGGATGGATGGGCAA
GAACTGGGGGACTTCACGGACTGGGGACGCGGGGAACCTAATGACGCCTC
GTTGGGGCCACAGGGAGAGGATTGCGTCGAATTCTATCCGCCCAATGGGA
ACAAGTGGAACGACAGGGCATGCTCTGATAGGCGGAAATTCATCTGCCAA
GCTGATACAACAGGTTGTCTCATCATGTATTTTTTCATCATATGGAACGA
CTCCAAGCCGAATGATTTTGATTTTGGAATTCATAACTTAAAGTTGACAT
AAGATACTACTGATGAGAAATACTCGCCGAATACCTTGTTCGTTAATAAT
GTCAGTATTACTTTGAATACACATCGTCTACAAATCTGCTAAATGTGGGC
TTCGTGTTACCCATTGGTAATACCACAACACAGTAATAAAGTAATCTTTG
GACGTTTGGTTGCAATAGAAAGATATTTTCTGACCAGAAGAAAAGATTTC
ATCACTGACTGCATGCATGTAACGTAGCCAGCTCTTATACTGCGTGGTTT
GCTTACTTTTCCTGTCCTTCAGAGCACCCTGGGTACACTCCAGTAGGTCA
AGGCGCCTACATCAACACATACCTCAAGGTGTTTGCACAGCCCAAGACTT
ACGAAGATGCCAAGCAGGCCTGTGCGTTAGACGGAGGCCATCTTGCCAAT
GTCAAGACACAGGCGTTACACGACTTTCTTCTGACTAAGATTCAGGAGGT
TGACGGGAGCAGAGACTACTGGATCGGGCTCAATGATATGACAGTAAGTC
TCGTGAGATGAAATACATGTGTATCAATGTCTGTTTGTTTTAATAGACAT
TATAGAGAGACCATGTTTCTTCTTATTTCGTCCATACCTTAAGTGGCGCT
GAACTTTAGATATCAATTTTACCTGGGAATTTGATATCAATGTTTCACAA
AACCTCCGATCTGTAGACATCTTCATTTGACTTTGACTTTGACTTTATTC
AGATCCACAATTAGCTTACAATGTGCAGCTATTCTTCCTGTGGTCCTTAA
ACAAATACAAATACACATAGATACAACATAACGCAATACTTTCCCACACA
ATACATTCTGTAGATAGTTCTGTTTTCGTGCTCGACAGAGTGAGTGAGTG
AGTGAGTGAGTGAGTGAGTGAGTGACATGGGTGATAAATGTAGGTATATT
TTCTAAATCTTGGAATACTTAGCCCGCCGGGAGCGGAGATTGGATAGTGG
ACTAAAGCTAAGAAGGTTGGACTACAGGCTAGGGAGACTATCCTTTGGCC
AAATGATATCTTGACAAAGGGTGTATTTTAGACTAAACATCTTCACCGCG
TAACAATTCCAATACATGTATGTAGGTCGAGAACACGTGGACCTGGTCTG
ATGGTACTCCGGTCAGCGACTGTGACTTCACCAACTGGGCACCGGGAGAG
CCTAACAACGCCGGCTCGACTGGGGATCAGGACTGTGGACAGCTATGGAA
GGATAAAGGTTTTCAATGGGACGACGACATGTGCGGAAATCAGAAGTACT
TTATCTGTCAGATAGGTACCTTTTCTACGTCTAAACTTTTCTTTATAATT
GCTTAATATGCTTGATTCCTATCTTGATGGGTATGAATCTAGTTTTCAAT
CTGATTTTTTCGATAACGATGGGCTCCAATTCTTCCCATTTCATACTTCC
AGGTTCCGGTGAAGAAACGTCCTGTGGACGACCAGAAGGTAACGTTATAG
ATCTATATCTCCTAAGTTGTGCATATATTTGTAGACACGATATATCGATC
TATAATGTCAACATTGCAACATAAATTTGTCATAGACTCTTTATTTTCCC
TCTCAGCTTGCTCCAGTGGCTACCAGATGCATAACGGCATCTGCTACAAG
GCCTTCAACACCCCGAAGAACCTTCGCGACGCGTCTTCGACATGTGCAGC
TGACGGAGGGACCCTCGCCATGCCAAAGGACGCCGACACTAACGCCTTCC
TGATCAACCTGAAAAACGCAGTGGACAACAAAGCTAAGTTCCGTTTTGGG
CTGACTGATCACCACCAGGAGGGAGGTTGGATGTGGGAAGATAACGTTGC
TCTGGGCAGCTTCAGGCCATGGGGTCCAGGACAACCGGACAACGCTGGGG
TTAATGAGGACTGCGCCGAGTACTTCTCCGGGAGTCGCTCGTCCCGTAAG
AACACCTGGAATGATGGACGATGTACCGATGCCAGGAAGTTCATCTGTCA
AGTCACGCCATCGGGTCAGGGTTCAAAATATTGACGTTTGCGTTTTGAAT
GGTCGTTCTAATTTCTAGCGCGGGGTGCAAGCCTGTCGTCTAAGCTTCTC
ATGATATACGTTCTCACGCTACTTAAACGTGCGTTTGATAATGCGATATT
TTGATTAAGAATGTACATTCTAGCATAAATCAGAGAGTAGATTTAACGAT
ACCGCATGAAAAAAATCGTCTGAATTGTGATGTCGTATACCTGCTGACAA
TAATGTAAGATACGTTTTATAACGATATCTTAGCCAAGTGGATTTTGTTG
CGTATAACGGAATGTAACAATATATTAGTCCCGAGACGATATCGTAGACG
TAAAACGATATCGCTTTGATAGTAAAAATACGTGCATTCGTAGACGTATT
TTCGCTTTTTCAAGGTACGCTTTTTACACGATATTTTGACACGGAAATTT
TGCCATACATCGTAGACGTATTTTCGCTATTTTAAGGGACGTTCATTCAG
TGGATATTTTGACACGGTAATGATACCATAAGCATCGCTAACGTATTTCC
GTTTGCTTCAGGTACCTTTTTCAATACGAAATTTTGACACGGAAATGATG
GAATAGACAGAGCGAAACCGTTAATGACTTACTTCTATTTTTCCTGATAG
CTACCAAGAAGTGGCGTGACGATGGGCGTTGCGGAAAGCGATACCCTGCT
GAAGACGGCAGGCCTGCTGAATGCGACCCTAGCGGAGACGTCCCGTGCTG
CTCCAGTTCCAACTGGTGCGGCAACTCTGCATCCCATTGTGACTGTCGCA
CTTGTGTCGACTACAGAAACACAGGTACATAGCAAGAGTTTGGAGATCTC
GATGAAATATTTTGAGTCTTTGTAGATTTATTGTTATATCTTGTCTCAGT
AATGATACAATAAAGGATATGATTAGCATAATATCTTTAAATGATGGCCC
AAAAGTACATAAACTGGATATTGAAATCATGGCACTCATGAAACAAAAAT
GATTGTGTTGTGTGGATTAAAAAGAAATGCATCTGGCTTGTCTTACCTCG
TGCGCTAATTATGATAACTTAGACACAAAGATCGGCCTTGATTCGTTATT
TTTAGTTCGGATTTTGACAGACAAGGATGACGTGGCACTGCACTTAAGTT
TTTATAACTGATATCAACAGTGCCAAGTACAGATGACAACATACCTATTT
CATTATACACCTGGGCGAAGTGAGGAAAGTCGTGTTAAGTGCCTTTCCCA
AGGGTACAACATCGGTGGCGTCAGGGGGATTCGAACTCAGGACCTCTTGG
TTCTGGGCTGAACACCCCGCCGTTACGACACGACTTGATTCGTTGTGCTG
ACGTATCACGACAGTAAACGAAGATAGTGAAAATACCACTACAGTTCGTC
CAAAAACGTTTTAAAGGATTGCACTGTTGACAGGATCTTCCGATGCATTG
AACCCACTTTTGCCAGGATGTGTAGACCTAGTACCTATATATATACGTAT
ACGTAAAACGATATCGTTTTGATTGCAACATTCAACTGCAAGAGGTATCA
ATCATTTCTAACCAGAAGAAAAGATTTCATAATTGACTGCATGCATGGAA
CCAGGACAGCTCTCATGCAACTCGGTTTGATTACTGTTCCTGTCCTTCTT
CAGATCAGCCTAGGTACACTCGAGTTGATTACAGGTACAACAAATACTTC
AAGATGTACACACAGCCCAAGGCTTACGAGGATGCCAACAGGACCTGTGC
ATCAGACGGAGGCCACCTTGCCGATGTCAAGACACAGGAGGTACACGCCT
TTCTTTTGACCAAGATTCAGGAGGTTGACGCGAGCAGAGACTACTGGATC
GGGCTCAATGATATGACAGTAAGT Coding sequence (CDS) from alignment at Sc0000201:196363..203986+ >transcript:BL96780_cuf3 ID=transcript:BL96780_cuf3|Name=transcript:BL96780_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1779bp|location=Sequence derived from alignment at Sc0000201:196363..203986+ (Branchiostoma lanceolatum)
TCATTCGTGACCGACCAGATGGGGACGTCATCAACACGAGGGTCTTCAGG
TAACTTGCGTAAGATAACCTTCCCCGCCCCACGCCGCGTCAGTAACTACG
CCGGGCTGGGGACGCCACTGTCTCAGGACTTGATGAGTTTTACTTTATGT
CTGCACATGCGCACCGACATGAGTTCCTACAGTCATACAAGTTTGGTCAG
CTACGCTGTGGGAAGTGTCCAGCATGCTAATGAGCTACTTCTTTTCAACG
ATGGAGGTAGTGGCGGCCGTTTCGAATTATACGTGCAAAATACGAAAGCT
GACTTGGGTGCCTTGCCCGTTTGGGACAGCGGGTGGCACGTCATATGTGT
TACCTGGCGCAGCAGTAACGGGGATTGGAAGCTCTACGCTGACGGCGCGT
TTCGGGCTTCAGGCACGGGGGTCAACGTAGGAGGAAAAGTGCGCGGCGGC
GGTACCTGGATCCTCGCGCAGGACCAAGACACGGTCGGGGGATCCTTCGT
AGAGTCTCAAGCGTTCAGCGGAGAGCTGTCGCAGGTGAACCTCTGGGACC
GCGTGTTGACTCCAGAGGAAATCGGAACAGACTGGTCAGTGTTCTGTAAT
CACCATGGTAACGTGATTGACTGGGCAACCATTAACATCCAAGTCGTGGG
ACAGGCCACCAGTGATCAGTATCGATGTCAAGTCACCTCGACACCCGCGT
CCGTAGAACGTCCTCGCACAACAATGACGTCACTCGTTACCGACCAGATG
GGAACGCCAGCACCACAGGGATCTCCAGATTGTCCACAAGACTACCAACC
ATTCCAAGGCATCTGCTACAAGGCGTACAACAACGCTGTCACTTTCCTAC
AGTCCGTCCGCGCGTGTGGTGCAGACGGTGGGACACTCGCCATGCCTCGC
GATCAGAAGACCAACGACTTCCTGATCACGCTGAAGAACTCGGTCGATCG
AAAATCCCCGTTTAGATTCGGCCTTCACGACAGAATCAAGGAAAACGTCT
GGAGGTGGATGGATGGGCAAGAACTGGGGGACTTCACGGACTGGGGACGC
GGGGAACCTAATGACGCCTCGTTGGGGCCACAGGGAGAGGATTGCGTCGA
ATTCTATCCGCCCAATGGGAACAAGTGGAACGACAGGGCATGCTCTGATA
GGCGGAAATTCATCTGCCAAGCTGATACAACAGAGCACCCTGGGTACACT
CCAGTAGGTCAAGGCGCCTACATCAACACATACCTCAAGGTGTTTGCACA
GCCCAAGACTTACGAAGATGCCAAGCAGGCCTGTGCGTTAGACGGAGGCC
ATCTTGCCAATGTCAAGACACAGGCGTTACACGACTTTCTTCTGACTAAG
ATTCAGGAGGTTGACGGGAGCAGAGACTACTGGATCGGGCTCAATGATAT
GACAGTCGAGAACACGTGGACCTGGTCTGATGGTACTCCGGTCAGCGACT
GTGACTTCACCAACTGGGCACCGGGAGAGCCTAACAACGCCGGCTCGACT
GGGGATCAGGACTGTGGACAGCTATGGAAGGATAAAGGTTTTCAATGGGA
CGACGACATGTGCGGAAATCAGAAGTACTTTATCTGTCAGATAGAGGTTC
CGGTGAAGAAACGTCCTGTGGACGACCAGAAGCTTGCTCCAGTGGCTACC
AGATGCATAACGGCATCTGCTACAAGGCCTTCAACACCCCGAAGAACCTT
CGCGACGCGTCTTCGACATGTGCAGCTGACGGAGGGACCCTCGCCATGCC
AAAGGACGCCGACACTAACGCCTTCCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000201 | genome | Sc0000201:196363..203986 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96780_cuf3 |
| Biotype | protein_coding |
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