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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96789_cuf3 >transcript:BL96789_cuf3-protein ID=transcript:BL96789_cuf3-protein|Name=transcript:BL96789_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=286bp
MIRGGVTCSPHGLAMTCVVVFLLFTVGKLDASLLVTNGTSIISYDISTSQ
ETVLPVSETGGIIALAVDVVGQRLYYADAETGAIVRCGLDGSDQQTIVST
DVTQPTGIAYDWVSGLVYWTDEGRGTVEVAQGDGANRKTLISGQMFPRGI
AVDPISGYLFWGNQGDFTIRRARLDGSDVEVLHNTGLFWPNEIVVDVQQS
RLYWIEGYYGYIGSSDLDGTDRTIIANVSSGHVLFGLALHEDTLYYTSWD
GKVFSVDRNSGEQEEIVMEGESEKLLGLVAVHSSRQ Run BLAST on NCBI mRNA from alignment at Sc0000089:673496..682753- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96789_cuf3 ID=transcript:BL96789_cuf3|Name=transcript:BL96789_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=9258bp|location=Sequence derived from alignment at Sc0000089:673496..682753- (Branchiostoma lanceolatum)
ACCAAGATCTGCCTTCTGTGTATAACAGAAGATACTAGTATTTCATAGCT
GACAGTTCTACATTTTGCAGCTCACTTTTTAGTCTGGCTTCTCAGCGGCT
TCATAATGGAAAACTGTCAGGATGTTTATTAATTGGGGAGGTTTGGGCAG
AATCGATTAGACACCATATCCAGCATGACTGGTCTCTCAGGGGACCGGCT
GATTAAACATGGGATTTACCTGATACAGTAGGCACTGGGGCCTCATTAGT
GGGAGTGCTGCTTCACACTGGGAAGGCCCCTCCCTGGCACTGTATGACTG
GGCAATCTACCATCATTATAACAACATCAAGACAACTTGCAGTGTCATGG
GAATTCTGCCAATCAAGGCAGATATAGGAGTGTTGGGAAAATGAAGTGTC
TACAAAAAGGCTTGTTTTCGTGAATGCAGAAAGGGGTAATGGGAGGAAAC
AGAATGATGTTTTGCCTTTTTTGGTGTTACCTGCACTTTATGTTTAACCT
ATCAAAGGGACACTGATGAGAGTATGTACAGTAATAACTACCCTGGCATG
TCACATAAATTACCCATGATTGTAGTCATAACCATTACCCTAAGTTGAAA
GATAAAAAGGACAGGAAATCTTACTCAAACAAGTGGGCAAATATAATCTA
GCCTGTTTAAGTGCCATTTGCTGCTCTTGATACACAGTTGATTGCCTCAT
AACGCATGTGCATGGAAACAGATTTGCAAGGTTTTATGATGAGAAAAATT
TTGATAACAGCAATCAGGAAATAACAGGTTGTCCCCAACATAACATCGTG
AGTCACAATCATCATGTACAAGTTCCTGTTCGTATTTTGTCCTTTAATTA
ACCAACTGTTTTCTCCATAATTGTAACTTTTACTCAAGAAAGTGGGTGAA
AAATATATGAAATGTCTTACCTCCATGCAGAAGCCTTGCCAGAAGACTGA
AGTCTTGGAAGTTGTCCAGAAGGAAGTAGTGGTCCTGTTGGCTTGGAGAA
GCAATAGATCTCAACTCAGCTTCGACTGTATCTTCAATTCCCAAGGCAAA
GATTTCCACCTGTTTGCCTTGTGTGGTCATGTCCCATCCCGACCACCTGA
GATTCGCAATCTCTCGTGCTGGGATAGAAGGCGGCTGTCCGATATTCGAG
CGGCCGTCAGTTAGAAGGAATATGGCCTTCTTCGCTGTTGGTCGACTTGT
TAAGATAACTTGTTTCGCCCTCTCTAGAGCTGTAGTTGTCGCCGTCCAAC
CATGTANTAGAGCTGTAGTTGTTGCCGTCCAACCATGTAGAGCCTTATTC
CTTAGCCTTTTCTCAATGTCATCATTGAGTTTGCACTTTGTTAGCCTACT
TGATGCTGATCCATCGCTCAGGTAGTCCACATCCACCGATACCGTGGTAC
TGTAAGTGATGATGGAGACCCTGGTGTGTGCAGAGTTAACGCTGAACTCG
TACAAGATGTTTTCAATGAACTGCAGCATGGAGTCCCAGGCACCGTTGTA
CCATCCTATACTAGCCGACCTGTCCAGTATGAAGATCAAGTCCACTTGTC
CATTCCAGGTGTTCAGCAAAGGTGTGACAAACGATGTGTTCAGAGTCAGT
GCCATTTGTTCTAGTCTCTCCACAGAAGTTTGTGCGGGAACTAGTCCATT
TACGGGGTTTAAAAACATCATCGCCGTCAACAAACAGAATGTTCTGAAAA
CGATAAAAGTCGCGCCTGTTTTGGGACGTTGCGTCCGAGTGTCGTCTGTA
GCCGCCATCTTGAACCTCTGTCCTCCGTCCCAAAACGTCGTCTGCAAAAT
CTCACCGATCGCTTTTCCTCAGTTGTTCTTCTTTTCTGACAGATTTACGA
CAAACCTCTATGAAAGGTCTCTTTCAGTCCTGAAAAAAATGAACACACAA
AGTAAAGTGAGCAGTTGTTTGCTGGGCTGTTCTGAACGGAAATGCCAGAG
AGGTAACACCGCGTTAGACGACTTGCTCCCGGCAACACACGCCCATCGTA
CCGAGCAGGTACTTGTACATAATACACCGTGAAAAATCGTTTATATCCAC
CACAAAGACATCTACAGACACCATTCATAACCCTTACCCCCGAATCACCG
TCCGCCTCGGAACGTTGTTACTTCTGAGGAAGAGTTCACGGAGATAATAA
CAGAAATATTTCAGGTGGGCCTTGTGATGACTAAGCCTCCCCTCTATATT
TGGGCAACACGTAGTCTCGTCATACCTGAGCGGTCTCACCTTCGGTAGTC
ATTACGTATGACCGGTTATCGTGCTCTGATTGGAGAGGCTCTTGCCTTCG
GGCCAACTTGCGAGGCGTCGCATTCTTTCTCACTGTTGTCCAAATCCTTT
GGGTCAACGGCGATCACCATATTCAATTCTCATGTAAAGTGGGACAAGTA
TTGAACGAACACAAGGGGTACAACTTTGAAAAACGTGTTTTATTTTTCTT
CCGTCGTTCTAGTTCTCTGTGTTGTAAAAGAGATTTTTGTCCAGGACACT
AATGATACTGTCGATAGAAAATTCTAATCTTCACTATATCATTTTGAAGG
CACAGTTTTTATAACAAACAGAATGAAATCACATTGCATTCTTGATGTCA
CGCCCAGTGAAGGAGTCACTATTGTTTGAACAAGGCCTGTGATTGGCTAG
GATGATCCCGGGAAATACCCCCGCGGCGGTTTCCGTATGACGTCAATACA
GGGCGTGTCCGCTAGCAGACAGGTGTTTCTTCCTATTCGACATATAAGGC
AATGGTTGTGTTCCGGGTAGCTTGCGTTGTTTTGCACGCGCAGGTGTAGA
TTTGTTTACGGTTGTATCACTAGTATCTCTCGTGATTGATGACCCTAATA
TAAAGAAACTTATTTTCTTTTAGAGAGCCCCAAACAAAATTTGCTATATT
GGGGCATTGGCTGGTCACAAGTAGAAATGAAGCATTGATGCATAGCATTG
CCTGGCTGAAAAATGATACACATTTGTTTTGTTTGCTAGATTGTTTGTCT
GTTTTCACATACTCATTTTCAATTCTATTGTTATCGTTTAATGCTAGTGT
TTGACGCCATTGGTTGTCAAAGCGATTATGACAAGTATGATAATTTGTGA
AAGTTCAATTAAAATTCGCGTTGTCTTGGTCCATCCAGAATCTTGAACGC
GGTGTCTGAATACACATGGGAACCCCAATAATTACCGTGTTTGTGTTCAA
CGGCACGTGCGAATAGTGTTTTGAAGACAACGAAATTAATTGATTAGCAC
CCGCTGGTAGTCAACATTAATTTTAAAACATTTATTCATCTTATGTATAG
TGTCTACAACGCTTTACAGCTGTTAAAGGAAATGATAGCAATCCCGTGGA
GTGTCTGGCGCGGTTGTGCGTCGCCACAGCTTCTCGAGCAGACGTCAAAT
GTTGTGTAGTATACCGCTGAGAAGCAATGACAACACATGTGATACACATT
CTAAAGTACAAACGTGTATTGGATATCAAATAGGTATCTGGCAGTTTCTA
TGTCAATGTCATTGTTCAGAGTTTTTTATAAAAAAATTGAAGAAAAAAAG
GAAAACACTGACTTCACTTTACTTGTACAATGTACACGTGACCAATAAAA
CAGAAAATATAACGCAGGTTGAATTGGTTATCATTTCTCATATGGACCCG
ATATTATGGGGGTAGCATACCAGCAATGGTGTATTTACACGTACGTGTAC
TTTGAAAAGTACTGCGTGACTTCTTTCTAAGGGCATCAGTGACATTGGAA
AGTATTTTTATTCATTAAGTACGATCTTTATTTCTTAGTACAAAGGTCGT
CGAATACTTAATTCGACAATTAATCATCTATTTGGCAAGTAAGAAGATTT
AATTACTTTACACATCAGTCATCGCTTCTGATGCTCATGGTACCTTCTAC
AAGTTATATTGCCATCACTCACTATATATCTCTACCAGACTAACCAAGCC
AGCTATAGGGAGAATAGGAGTTTGGCCATCGGAAGGATTCATTCGCGGGC
GAAATGGATCTTCACCGTGGACTGACTCTACTGGCTAGCCATTCCTTTTT
CTGCCGAATTCTACGATCCATACGCCTGTAGGAGGGCCTGATGGAAGCTA
ATATTGCCATAAGATTTGATATTATCTTGAGGGTCAAGGATCTTGTTGCG
TTTGAATGAAATCCAAGCGTTGATTAGAACTGAGAACTTCATCACCGTGA
ATAACAAGAGTGTGGTCCTGTTTTTGTAGAAGGGGAGAACTTGAACTAGT
CACGCATCAACAGGGTTTGTGGAACAGGTATGTTTGTGAGTGATGTTTGT
GTAGGTAACCGTATCAGCATGTCTTACAATGGGGGTGGTCACACGACCAC
AAAGGCCCAATCACCTATCATGTACCAAAGTCTTGTGTGTCCAAAATTAG
ACGACACTTCATCGGGGGGTTTACGCCAGTAACGAGCCTGCTAAGCACAC
GCCTGTAGGCAAAGTTCCTCTTTCATCGTCGCCCACGCCGAGATGGGTGA
AAAACAGAAGCAAGACTCCTAGCTCGCAAATGTTACCAGTGCTTTAGCTG
TGGTACAGACCGAGCTCCGGACAAAATGATTCGTGGAGGCGTCACCTGCA
GTCCACACGGACTGGCTATGACGTGCGTCGTTGTTTTCTTACTCTTTACG
GTTGGGAAACTTGGTGAGTTGTCCTGTCATGTTCCTTGCTACGTACAGGA
AGTTAATGTTTGTAAAGTAGCCGATTTGTGGGCGATAGTGATGTGGTAAA
TGTAAACCCAAACTCACAGGACGTCCGGTAAAGGGCTTCTAACTTTTCAG
AGGTAAACATGGAAGACATGCCATGAAGGGCGAAGTGAGTTAATGAAGTT
AGATAGGTATAGGTAAACGACAATTCAGGTAATCACACATGTGACCACAT
CTGAAATATCTATTATTATTGAAGGTAATGAAAATAGACATAAAGAACAC
ATGGAGTAGACATTATAACTAATAATCCGTACTTTTCGTACAGATGCAAG
TCTGTTGGTGACTAACGGAACCAGTATCATCAGCTACGACATTTCGACAA
GCCAGGAGACAGTCTTACCTGTATCGGTAAGTCCACGTCCCTTTACTGCG
ATATCAGCTCTGTTCTTTATTGTCAGTACAGAAACAAATGTCGGATTTTC
AATTTGTTATCGTATCAAGAGTTGACATCAGCATACTGTTTATCGCTGAA
AGAATTAAACGATGTTAAGTTCGGATGATTTGCATGCAACGTACATATAG
TAAAATGTATTGGTAGTTTTAAACATATATCCATAATGTGTGCCGTCTGA
CAGACGAATGCACATTTGTCATGTCTATCTCGTAGTGCATATGTGCGTAA
AAGTGTAGAAACTTAGATCTGATGCAAAATATCCCGTCGATTTGTACGTG
GATTTTTGTTACTTCCTGCTTTAACGAGGAAAATTATGCTTTTCAAGTTT
CGAAAGATCGCAATGGATAGTCGTAAAAAGCAAGAACTGAGTTATAATTG
TACTCTTTTTGTTGAAAGAGCAGGGAACAGTAAGTTCTAAACAGCGGATT
AAAGATCAAGACATTGTGGTGTCCTAGTGTCAGAGGAATATTTTAGCGGT
ATCATTCCATCATTATCGCACTCTAAAGGACTATTATTCATTGTGCACGT
GCCAGTGCTAGTGTCGTTACTTCTTCATTTGTGCTTTATGTCAGCAATCG
GAATTGATTAATTACCTCTAGCTAGTTACTTTTAGCATTAGGGGGGGGTT
TTACCAAACTCTCGCTACTAGCGAAGGTTTTCATACACAGGACCTATAGC
GGGTATGTTGCAAGCTTTTAAGGCAAGAGCACGCGATAAAACCGGCAACT
TTTCCCGCAGGAAACTGGCGGTATCATCGCCCTTGCCGTTGACGTTGTCG
GACAACGTCTGTACTATGCAGACGCCGAAACAGGTGCGATAGTCCGATGT
GGACTCGACGGTTCCGACCAGCAAACCATCGTCAGCACAGGTAGGATCAT
TTCCTCAAAAGTACTAGGTTACAACGTCAACATACATGAGGCAGGACTAT
TCATCCTGCCAGGGTAGTGTAAACATGTGTGCTGCTCTGCGCACCTGGTA
AACAATGATGTCGCGTCACTGCGCATGCGTAATTTCCTTGAAGGGAGGTA
GAGGTACGTGGAATAGGTTGAGGTCGTCATGGTCATGACATTGTATAGAT
ACTAGTCTAGTGAGGAAAATACTTAAGATACAAATGTATTTCAAAGTTTC
AGACGTCGACGTCGTACTTAAGGTAAATACGTATTGCACGAAAAGACATG
TAATATTGCTTAGTCTTAAGTAATGTAGCGAGTCTTCTTACAAAAGTCAT
ACCAGCCTGAAATCACATCTCAGCATCCAGAAGTGTCAACGAAAATGGAA
CGATTTTTTTTTGCAGTTGCGCTTCACACATTTCTAACTATTATTTATAG
TTTTACATATTATCTATGTTATGTTGTAAAGACTTGTTATAGCTTTTGGC
AATGCAAATCCCTCTTCGCGCAAAAGTCGCTTTAACCTCCTTGCTTTAAC
TAAACTTCGGCAATTCAAAAATAGCTTATCATATCAACAACACAATCATT
TATTGGGAAGCTATAGTTCGGTCTAAAAAAACATTCCGACGTGCAGTCCA
CAGATTTATGTAGTATGAAAGTTGTGCATCTTGAAAAGTTTTTAAAAACT
CGATGATTTGCCCCCAGACGTGACCCAGCCGACCGGTATCGCCTATGACT
GGGTCTCAGGGCTGGTGTACTGGACCGATGAGGGGCGGGGCACGGTGGAG
GTTGCCCAGGGAGACGGCGCCAATAGGAAGACTCTCATCTCGGGACAGAT
GTTCCCCAGAGGGATCGCCGTGGACCCCATCTCTGGGTACGGTCATGGTT
GTTGTGACGATCTATCCTCTTTATAAACATAAGAAGCTTACACTACATGT
AGATCTACACAAGATATGATATATGGTGAATTACACATTGGTAACTTAGG
TAAGGAAAATGCAACGATATTAAGTTTTGCAAAGCTTCAGAATCTTTAGA
AGACAATAACCGCTGTTAAACAATGTATGCGTCCTGTTTGATGCTGAGCG
TGTCATATGCGCCCTCTGGCGGTTCAAACTAGTGTTTCAGAATTTTCAAC
GTGCTGATATTGATAGTTCATGTGTGGTTGCTGTTTTGAGTGGATTTTAG
TGAAATAGTTTTCGTACTACGTGATTTTCCTTCAGATATCTGTTCTGGGG
GAACCAAGGGGACTTCACTATCCGGCGCGCTCGGCTGGACGGCTCGGATG
TGGAGGTCTTGCACAACACCGGGCTGTTCTGGCCGAACGAAATAGTTGTG
GACGTTCAGCAAAGGTAAGACGGCATGATCTGGACCCCCTTCCCAATAAG
AAATCCTACACACATTTGCATGAGCATATGTAACGTTAACAAGTGACAAT
GAGGCTAAGAACAGAACACTTACCCTTCCGACATCAGGGCCTGTTCGACA
TTTTGGAAGGAAAGGTCGCGGCAGCAACAGTTGAACAGTTGTGGTGCTCA
ATTCTACCCCCAGATTTTATTCAGCAGTTGCTTTCTCATTTACATTACGT
TACCAGTAAGAAATGTGTTGTATTGACTGTCACTACCCGAAGTGGGATAT
CACAAACTGTTTTGGTAATGAATACGTTATGGTAGCAGCCTTGTATGGAT
TTCAATGGCACGCCTTACTGTAACTTTGACACTAGCTGAGGGGTTGGATT
TCAGCATTACTTAGCCAATATAACCCCCTCTTGTTTATCAAATCACTATT
TGTTCTGCGTTTTGAATATTTGAAAACTTTCTTTTCAAATTGGTAAACAT
GTTTTAAGTTGTTTATTTTCAGACAGGTTGCAAAAGGTCAGGAAAAGTTA
CATGTAACCCTTTCATTGATGAATATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTGTTCTGGCCGAACGAAATAGTTGTGGACGT
TCAGCAAAGGTAAGACGGCATGATCTGGACCCCCTTCCCAATAAGAAATC
CTACACACATTTGCATGAGCATATGTAACGTTAACAAGTGACAATGAGGC
TAAGAACAGAACACTTACCCTTCCGACATCAGGGCCTGTTCGACATTTTG
GAAGGAAAGGTCGCGGCAGCAACAGTTGAACAGTTGTGGTGCTCAATTCT
ACCCCCAGATTTTATTCAGCAGTTGCTTTCTCATTTACATTACGTTACCA
GTAAGAAATGTGTTGTATTGACTGTCACTACCCGAAGTGGGATATCACAA
ACTGTTTTGGTAATGAATACGTTATGGTAGCAGCCTTGTATGGTATTCAA
TGGCACGCCTTACTGTAACTTTGACACTAGCTGAGGGGTTGGATTTCAGC
ATTACTTAGCCAATATAACCCCCTCTTGTTTATCAAATCACTATTTGTTC
TGCGTTTTGAATATTTGAAAACTTTCTTTTCAAATTGGTAAACATGTTTT
AAGTTGTTTATTTTCAGACAGGTTGCAACAGGTCAGGAAAAGTTACATGT
AACCCCTTCATTGATGAATATCATATTACCTGCAGACCACACTGTACTTA
ACATGAATTTTGTAGGATGGGGATCTTGACTAGCATTGTAATCCCTGCTA
AAGCTCTTTTGTCAACGGATAAAAGGATAAAATGTTCCAGTCTCCTCTAC
CACCTAAGAAAAACAAACAAACCAAAAATTAAAGACAAAATAGACTCATC
CATCAGATGACAGATCACAATGATTATTATGATCAGGAGTTCTCTCCCTA
TATATCAGGCACAGCATCTTTCTTTATATAAACACCCAATGTTTGCAATA
TAACAATGCAATATTAACACAACAACACTTGATCTATACACCCTACAGCC
GCCTGTACTGGATTGAAGGCTACTATGGTTACATCGGGTCCAGTGACTTG
GACGGGACAGACCGAACCATTATCGCTAACGTTTCTTCCGGACACGTGCT
GTTTGGACTTGCCCTGCATGAGGACACACTGTACTATACGTCTTGGGATG
GCAAGGTATTCTCTGTGGATAGGAACTCTGGAGAACAGGAAGAGATTGTC
ATGGAGGGAGAGTCTGAGAAGCTTCTTGGACTTGTCGCTGTACATTCCAG
TAGGCAGC Coding sequence (CDS) from alignment at Sc0000089:673496..682753- >transcript:BL96789_cuf3 ID=transcript:BL96789_cuf3|Name=transcript:BL96789_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=858bp|location=Sequence derived from alignment at Sc0000089:673496..682753- (Branchiostoma lanceolatum)
ATGATTCGTGGAGGCGTCACCTGCAGTCCACACGGACTGGCTATGACGTG
CGTCGTTGTTTTCTTACTCTTTACGGTTGGGAAACTTGATGCAAGTCTGT
TGGTGACTAACGGAACCAGTATCATCAGCTACGACATTTCGACAAGCCAG
GAGACAGTCTTACCTGTATCGGAAACTGGCGGTATCATCGCCCTTGCCGT
TGACGTTGTCGGACAACGTCTGTACTATGCAGACGCCGAAACAGGTGCGA
TAGTCCGATGTGGACTCGACGGTTCCGACCAGCAAACCATCGTCAGCACA
GACGTGACCCAGCCGACCGGTATCGCCTATGACTGGGTCTCAGGGCTGGT
GTACTGGACCGATGAGGGGCGGGGCACGGTGGAGGTTGCCCAGGGAGACG
GCGCCAATAGGAAGACTCTCATCTCGGGACAGATGTTCCCCAGAGGGATC
GCCGTGGACCCCATCTCTGGATATCTGTTCTGGGGGAACCAAGGGGACTT
CACTATCCGGCGCGCTCGGCTGGACGGCTCGGATGTGGAGGTCTTGCACA
ACACCGGGCTGTTCTGGCCGAACGAAATAGTTGTGGACGTTCAGCAAAGC
CGCCTGTACTGGATTGAAGGCTACTATGGTTACATCGGGTCCAGTGACTT
GGACGGGACAGACCGAACCATTATCGCTAACGTTTCTTCCGGACACGTGC
TGTTTGGACTTGCCCTGCATGAGGACACACTGTACTATACGTCTTGGGAT
GGCAAGGTATTCTCTGTGGATAGGAACTCTGGAGAACAGGAAGAGATTGT
CATGGAGGGAGAGTCTGAGAAGCTTCTTGGACTTGTCGCTGTACATTCCA
GTAGGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000089 | genome | Sc0000089:673496..682753 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96789_cuf3 |
| Biotype | protein_coding |
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