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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96790_cuf0 >transcript:BL96790_cuf0-protein ID=transcript:BL96790_cuf0-protein|Name=transcript:BL96790_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=481bp
KVLTPVQVPIISPTATSIELDDKEKFPHFMRTASSDKSQAQAMVELLVVL
GWTYVSTVASADSYGRMGIAEFTRAAKEAGICVAVSTEVSNTASGQAYFG
PILNQLITKAEDGAVGVVAFLHDFNFQRIMEVAVSEGDRAKVLTWIVSEG
VGPDQTVVQGYGSHARGMVTLRPSFSVIQEFQQHMETQHAVNRRGINPWF
PEYYMELNQCRINHRSIDYTARKYVRFATLEVCDSFIMSSGFNQTFVASK
TIDAVYAFAYAMRAAQADLCGPNPSGLCDDMRRMTQEEFFRYLQDVYFTG
LGGNTVRFDETGNVEAAYDLFNYVDTNNDGEGDTFNRIGTYQGETLDVAL
MNITMYDQSGAEGVPDSDCLRDCSRCLPLKEDKKYAYLSGDVLVNGLFPV
HSAGDTTFVCGDINREKGVQTLEAFLYAIRRINQDANLLPSVSLGTLVLD
TCYTSIQASQDVSNLQSRVVTYGDVDVYDII Run BLAST on NCBI mRNA from alignment at Sc0000211:204709..210246+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96790_cuf0 ID=transcript:BL96790_cuf0|Name=transcript:BL96790_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5538bp|location=Sequence derived from alignment at Sc0000211:204709..210246+ (Branchiostoma lanceolatum)
CCAAAGTCCTGACTCCGGTCCAGGTTCCCATCATCAGTCCCACCGCCACG
AGCATTGAGCTGGACGACAAGGAGAAGTTTCCTCACTTCATGAGAACAGC
CTCCTCCGACAAGAGTCAGGCACAGGTAATCTTCAGTATATTTTTTCAGG
TTCGAGGTAGCGTGCGTAGTCCAGTGGTTAGGGATCTTACCTCTGGAACT
AGAAGCCCCGGGTTCGATCCCGGCTATGTCGCTCACCCGACATGCACGCT
ACCGGAAGGGGTCGCAGTCCTTAAGACGGGACGTTAAGCCGTGGTCCACT
GTTCACTGTGCTTGTCGAAAAGAGCTAGGGAAATTACCCCGGTACAATGA
ACCTGTAAATACTGTACATAGCGTCTGTCTTCTCTGTCATGACCAGTGGA
AGATTAGCTCATCTGTTCATTGAGTTCATTTGAGCTAAACTGGTTCTAGA
TGACTTTCATTTTCTTTCAGGTACTAGGTGTTTGGAAGAAATATAATTGT
TTGAAGGTAGATGATGGTAGATGGTAATAGATAGTTGTATATCAGTCAGA
TTCAATCCCAATCGATTGAAACGTGATTCGATTTTGGGGAGAAAACTGGA
AACAAGATTTGAGTAAGGATATTTTCATATTAGATTAAAACGATAACTTA
CAACTAGTACTGATGAATTACGTCATAGCAACGATATATGTAGCTGGCAA
TGGTAGTTTCTGTATTAAGATTATCATGCGGTATGTTCTACATGTACGAA
AGTTACAGTAAGAAAAAGCCTAGTTTGACACAATATCAAAACCAACATTG
GTTATGTTGCTACCGCGTATAGATATGACAACTCCTCGGCATAAATATGT
ATGAATACATCATTTAACATCATTCCAGGCTATGGTGGAACTGCTGGTGG
TTCTCGGCTGGACTTATGTGTCAACTGTGGCGTCAGCTGACAGCTACGGG
AGGATGGGAATCGCAGAGTTCACTCGCGCGGCAAAGGTACGTGTGTTCGT
TCGTGCGTGCGTACGTGCGCGCGCGTGCGTGTGTGTGTGTGCGTGTATGT
CTGGGTAACATCGGTATGATACGGTTAAAACATTCATCGAATTCAATCAG
AAATGCTCGCAATATTCTCGCAAAAAACGTGAATATAGTTTTGCATGCAT
CTCCTTGGTGCTGAAACCGCGGTGCTTCGTTGCAACACTCATATCTCCAC
ACAACAGCTTTTCTAAATCCACAAACACCGCAATTTTCATTGGCAACAGT
AATTTCAATCACAGATTGATAGCATAGCTGATGAAAGCAAACTTTTCTAT
GATGAAGCTGAACTTGACAACATGAAAATTTTTAGAAAGATACACCGAAA
ATAGTTACTCGAGCAACTGGATAGAATTTTGAAACAGTCAGACGTTTCAG
ACAGCATCCGCTGTCTTTCGTCAGTGACTTACGATAGCGGATGCTGTCTT
AAACGTGTGACTGTTTCAAAATTTTATCCAGTTGCTTGAGTAACTATTTT
TGGCGTATCTTACTACCTGGATGTCTAACCTTCATCAACGTACTTTTAGA
AAAAAAATTACACACTATTTCTACGTCATGTGTCGTCGACATCAACTTTT
CTTTGCATGTAAACAGGAAGCCGGTATCTGCGTGGCGGTCTCCACGGAAG
TGTCTAACACGGCCAGCGGGCAGGCGTACTTCGGCCCGATCCTGAACCAG
CTGATCACCAAGGCCGAGGACGGGGCCGTCGGGGTGGTGGCTTTCCTACA
CGACTTCAACTTCCAGCGGATCATGGAGGTGGCCGTGTCAGAGGGGGACC
GCGCGAAGGTGCTATACTCACTCCCTAGAAACCAGTCTGAATTTGTAACT
TCCTACATGATAAAATTGAGAATTTGGTTTAGGTGTTGTGTCTGTTTGTT
TCTAGATATTTGTGTTCAGCCTAATGTAAGAACCTCTGGATGGATTATCT
TGATATTGTGATTATATTTAAAGACGGATATGTCTTGGAATGGAAAGACA
GTCAAGGTCAATTTCGGTCTTTTTGATGGATACTAGTACCCTGCCCATCA
TTTTCTCCATTTATTTTCAAATTTGTAGACCACTTTCTGTACATAACTTC
ATCAGAACATTAATCTAATAAGTTTCGATTCATGAAATAAATTTCACATA
CGGTATTAGGTTTCTGTTTTGCTACATCTACACGTCCATTCTCCAGGTGC
TGACATGGATAGTATCAGAAGGCGTGGGTCCAGACCAGACCGTAGTGCAG
GGGTACGGGTCTCACGCCCGGGGCATGGTCACACTCCGGCCCTCCTTCTC
CGTCATCCAGGAGTTCCAACAACACATGGAGACTCAGCACGCCGTCAATC
GCAGGTTCGTAATATCTCCAAAACTTGGGACAAATAGTATACAGTACAAT
AAATGAAACGTCATCCATTGCCCCTAGCGTATGTTAATTTCTCCCTATAT
CTAAGATCGCAGTAACTCAACAATCGTCATAATGCCCCGCGTCACACAGC
AGGAGAATCGATCAGCCGATGAGTCTGGTAGCTCTAAATGCCATTTTCGG
TAGTAAAACATCCGATATGCTCTCGATCATCGCCCGATTTTTAGAGATCA
CCCGATCAGCCGAAGTTCGCAGGTTCCTAGCCCTGAGCCCCATCCAATAT
GATGGGGTACAATCTCAGGCAAAAGTACACTCCAGTCTCTGGCGATTTTA
AAATCGGCGACCTTGTTGAGATCAGCAAATATTAACAAAGCGCCTCGACT
GTGTTACAGGGGCTTAAAGGAGCGCGATCTCCTAATCACTGTAATACCAC
AAGAAAGCTGCACCTTATACAAGCATTGTACAAAAAAACTGTACAAACAT
AGCATTCTTGTTGGTCTAAGTCTGTCTGTTTTCCTTTGTGTGCGTTCTAC
AGAGGAATCAATCCCTGGTTCCCTGAGTACTACATGGAACTGAACCAGTG
TAGGATCAACCACAGGTCCATCGACTACACAGCCAGGAAATATGTCAGGT
TTGTTTCGCATCACTTCTTAAGATTTACTGTTGTATTCCCGGTTGTGGCA
CAGGTTGAGCTTGCTCATACCTTCTTTTCCTACAGTTTGAATATGAATTT
CGTCTCGAGGAACATGTACGTGTTTGTAAAAAAAGAAACAATCTCGGTCA
ACTCGGGTTGTACAGTTTCACGTCAAGACGCTTAAACACTTTTAGTATAT
CATACATATTCTATATGCACTCCGTACCCAAAGTAAAGCTCACCGACAAG
CTTTCGGTCAGATCCCTCTCAAGTTGAAATGACCCAAAGCGTAAGGAATT
TCGACGTCAGGGTCGGGTCAGGTGCTCAAAGTCGGTATTAGCCTAGTCTC
TGAGAGTTTTATTGTAGGATATCTGAATCTGTCTAGGTTTGCCACCCTGG
AAGTATGCGACTCCTTCATAATGTCCAGTGGCTTCAACCAGACGTTCGTG
GCCAGTAAGACCATCGACGCTGTCTACGCCTTCGCGTACGCCATGCGGGC
GGCCCAGGCCGATCTGTGCGGGCCGAACCCGTCAGGGCTGTGCGATGACA
TGCGCCGAATGACTCAGGTTTGTCCTTTTCTTACGCATTCTTCTAGCCAG
TGTTACACAATCTATCGCTGTCATGGGCTGGTTGGATAGGATGAAGATCT
CTTGAGAAAGAGCTTCAACATTAAGCTGATGTATTACGCTAAAGAGCGGG
TATACCGGTGATACAGATACAGAACATACTTTATTTTCTCTAGTCAGGTC
ATCATTCTTCATTGATAGGCTTAGGGTTGTTTTGCCGGGCCCAGAATGCT
AAGGATAGGCCTGTTTCTGGCAACCTGTCTTTTTAGCCGGCCTTTCAATT
CATCTCGCGAGCTGATTAAAATCAACGTGTACAACGTGATTAAAATCAAC
GTGTACAAAGAAACGTGTACGCTAATCTGCCTGGGCGGGCGTGCATCCCT
CCCTGCACCTTAGAGATACCAGGAAGCGCCCAGTGGTATACTTATCAGAC
TATTGGAAAATTTTAAACTTTGATCCAACACCAAGAGTTGAACTCACCAT
GAATTTTTGGTGACGCGACGGCGGAAGATTCCGTCTGCCCGCTGCTTTCG
ATTCACTGCTGACGTCATCACGTCTCTGACTTCCCGGCGTTCAACGCAGT
GGATCGAACATCTGACGAAGGTTGGAGGTCCAACCGAAAATTCATGGTGA
GTTCAACTCTTGGTGTTGGATTAAAGTTTAAAATTTTCCAATATGTACTC
TACAAACACAAATGAGCTTTCATTCTTATCAGACTATATATTTCAGACTA
TATATTTTCTCTCTCCAGGAGGAGTTTTTCCGATACCTGCAGGACGTGTA
CTTCACAGGACTCGGTGGGAACACAGTCCGGTTTGACGAGACGGGAAACG
TGGAGGCGGCGTACGATCTCTTCAACTACGTGGATACGAACAACGATGGT
GAAGGCGACACTTTCAACAGAGTAGGTCATTTTGGTGTTTGCCTCCGTGT
AGGTCATTTTGGTTTTTTCCTCCGTGTACGGAGGTTTGTTTTCGGTTTAC
TTTTTGCAGGCCAGGCAAGGCAGAATATCAAATATCCTTGTAGAGTGTAC
ACAGCTTCACAGTTGTTCTCGTTCAAGGATATAGGATATTACCAGGTCTT
GTAACAATAAAAATGTTAATAACATCCATCTATGTAGACCACGTATCATC
ACTGAGAAATATTTATCAATCTATCTATCTCCTTAATTCCAAAGATCGGA
ACGTATCAAGGCGAAACGTTGGACGTGGCCTTGATGAACATCACCATGTA
CGACCAGTCCGGCGCCGAGGGCGTGCCGGACTCCGACTGCCTGCGGGACT
GCTCGCGCTGTCTTCCGCTGAAGGAGGACAAGAAGTACGCCTACCTGAGC
GGCGACGTGCTGGTCAACGGGCTCTTCCCCGTGCACAGCGCGGGGGACAC
GACGTTCGTCTGTGGTGATATCAACAGAGAGAAGGGGGTACAGACACTGG
AGGCTTTCCTGTACGCCATCAGACGAATCAACCAAGACGCCAACCTTCTG
CCGTCCGTGAGTCTGGGCACATTGGTGAGTTAGCTACATGGTCTATAGTG
ATAGATAAGACGTTCAAGGTAGAAGAAGACTTAACCAAATATCAAAACAT
TCCACACCGACATTCTCGAGTTATCGTGCTTACAGAAGGAAAGGCAAACT
CACATACAAACGCTACCGAAAAGATGACCGTCTTGGTGAAAATTATAAAA
GATCAACAAATACAAAGCATGTAACTGTAAATTACATTTATTTTCACTAG
TTCTTGCAACATTTGCTTTCTTGCTTAGTTGCCTTCTGACTACTTATAGT
CAAAATTTAGTTTTGGATACCTTGGTCACTTACAACATTAAACACTATTG
ATTATACTGGGTTTTTTTCGCTTTCGCTTTCTCAGGTGCTTGACACCTGC
TACACCTCGATCCAAGCTAGCCAGGACGTGTCAAACCTTCAGAGTAGGGT
GGTGACGTATGGGGATGTTGACGTCTACGACATCATAG Coding sequence (CDS) from alignment at Sc0000211:204709..210246+ >transcript:BL96790_cuf0 ID=transcript:BL96790_cuf0|Name=transcript:BL96790_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1443bp|location=Sequence derived from alignment at Sc0000211:204709..210246+ (Branchiostoma lanceolatum)
AAAGTCCTGACTCCGGTCCAGGTTCCCATCATCAGTCCCACCGCCACGAG
CATTGAGCTGGACGACAAGGAGAAGTTTCCTCACTTCATGAGAACAGCCT
CCTCCGACAAGAGTCAGGCACAGGCTATGGTGGAACTGCTGGTGGTTCTC
GGCTGGACTTATGTGTCAACTGTGGCGTCAGCTGACAGCTACGGGAGGAT
GGGAATCGCAGAGTTCACTCGCGCGGCAAAGGAAGCCGGTATCTGCGTGG
CGGTCTCCACGGAAGTGTCTAACACGGCCAGCGGGCAGGCGTACTTCGGC
CCGATCCTGAACCAGCTGATCACCAAGGCCGAGGACGGGGCCGTCGGGGT
GGTGGCTTTCCTACACGACTTCAACTTCCAGCGGATCATGGAGGTGGCCG
TGTCAGAGGGGGACCGCGCGAAGGTGCTGACATGGATAGTATCAGAAGGC
GTGGGTCCAGACCAGACCGTAGTGCAGGGGTACGGGTCTCACGCCCGGGG
CATGGTCACACTCCGGCCCTCCTTCTCCGTCATCCAGGAGTTCCAACAAC
ACATGGAGACTCAGCACGCCGTCAATCGCAGAGGAATCAATCCCTGGTTC
CCTGAGTACTACATGGAACTGAACCAGTGTAGGATCAACCACAGGTCCAT
CGACTACACAGCCAGGAAATATGTCAGGTTTGCCACCCTGGAAGTATGCG
ACTCCTTCATAATGTCCAGTGGCTTCAACCAGACGTTCGTGGCCAGTAAG
ACCATCGACGCTGTCTACGCCTTCGCGTACGCCATGCGGGCGGCCCAGGC
CGATCTGTGCGGGCCGAACCCGTCAGGGCTGTGCGATGACATGCGCCGAA
TGACTCAGGAGGAGTTTTTCCGATACCTGCAGGACGTGTACTTCACAGGA
CTCGGTGGGAACACAGTCCGGTTTGACGAGACGGGAAACGTGGAGGCGGC
GTACGATCTCTTCAACTACGTGGATACGAACAACGATGGTGAAGGCGACA
CTTTCAACAGAATCGGAACGTATCAAGGCGAAACGTTGGACGTGGCCTTG
ATGAACATCACCATGTACGACCAGTCCGGCGCCGAGGGCGTGCCGGACTC
CGACTGCCTGCGGGACTGCTCGCGCTGTCTTCCGCTGAAGGAGGACAAGA
AGTACGCCTACCTGAGCGGCGACGTGCTGGTCAACGGGCTCTTCCCCGTG
CACAGCGCGGGGGACACGACGTTCGTCTGTGGTGATATCAACAGAGAGAA
GGGGGTACAGACACTGGAGGCTTTCCTGTACGCCATCAGACGAATCAACC
AAGACGCCAACCTTCTGCCGTCCGTGAGTCTGGGCACATTGGTGCTTGAC
ACCTGCTACACCTCGATCCAAGCTAGCCAGGACGTGTCAAACCTTCAGAG
TAGGGTGGTGACGTATGGGGATGTTGACGTCTACGACATCATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000211 | genome | Sc0000211:204709..210246 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96790_cuf0 |
| Biotype | protein_coding |
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