transcript:BL96792_cuf14 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96792_cuf14
Unique Nametranscript:BL96792_cuf14
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96792_cuf14

>transcript:BL96792_cuf14-protein ID=transcript:BL96792_cuf14-protein|Name=transcript:BL96792_cuf14|organism=Branchiostoma lanceolatum|type=polypeptide|length=242bp
IPVYKMGQMFMYDIYQSRQNTEDFTIFTLDDVDAAFDKIVQLKYSQNVPM
KGKGHGLTITPLPAGHMIGGTVWRIVKEGEEDVVYAVDYNHKKERHLNGC
VLEGINRPCLLITDAYNANYVQLRRKLRDEQLLTEIFNTVRDDGNVLVSI
DTAGRVLELSQLLEQYWQNAETGLQAYNLCLLNNVAYNVVEFAKSQVEWM
SDKIMRVFEDNRNNPFQFKHLKLCHSLSELHKVPDPKVVLAS
Run BLAST on NCBI

mRNA from alignment at Sc0000062:1265992..1270812-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96792_cuf14 ID=transcript:BL96792_cuf14|Name=transcript:BL96792_cuf14|organism=Branchiostoma lanceolatum|type=mRNA|length=4821bp|location=Sequence derived from alignment at Sc0000062:1265992..1270812- (Branchiostoma lanceolatum)
CCATCCCGGTCTACAAGATGGGACAGATGTTCATGTATGACATCTACCAG
GTCAGGACACAGTTGTTATTTTTGATATTGTAAATTCAGTTAAGTTCAAA
TGGACCTAGTTTCACAGTAAGGGAGAAAAGTTACAGTTTGTGGTGGGTAC
CTGGAATACATCACTGACAGAAAATCTATATTGTTTGCAGTATGATAATT
TTGTAATGAAAAAAATGTAAAACATACATATAAAACCACCACAAATATTT
CAAGATTTACAGCAATTCAATCGCTCTTCCCTTAATGTTTGACTATATAT
TGAATAATGCATTAGATTTGATATAATATTATTATAATCATATGAATCAT
CATCATGTTATTTCTAGGGAAAGTGATTTTTTCAAACAAATTGCATTGTT
GATGAAACATGGGCAGTGTTCTCGCCAGAATTTTTTCACAGCATAGGGGT
CAGGTACAGAAGGCCAACTTGACGCGCCGCAAGCTACGAAGAAATTACCG
CAGAGTAGGGTGTCTGGCTTGTTCCCCCGGAAAATTTTTGAATTCATAAC
CCAATGAGACACTATTTCCTGCATTTTGAGGGATAAATTTTGTGAAATAA
AGTTTTTCCTTTGTTACAGCCTCATTCTTAAGCCAAATATGAACTTTTTA
TAAGATTTATGAAGGGTCACAAGGTTCTTTCTAGAAAGAAACACCCCTAT
GCTGGTTGAAACACAGCATAGGGGTCCAGACCACAGCATAGGGGGTCCAA
ATCACAGCATAGGGGGCCCCTATGCTGAAAAGGCCTGGTGAGAACACTGA
TGGGTACATTTCAAGTAAGCAATGGCTTGTATAAACACGTAGCAGTTGAA
TGTGTTGAAAGATTCCTTATATAAACTCAGTGGTTTTCATCAATGTCCTG
GTTGTTTGTTTGTTTGTTCGCAGTCTCGACAGAACACAGAAGATTTCACC
ATCTTCACCCTGGACGACGTGGATGCAGCTTTTGACAAGATCGTGCAGCT
GAAATATTCCCAGAATGTCCCCATGAAAGGTGAGTGATTGATCTGCAGTA
AAAGGATCAACAGTAATGCTGTACTACCTGTACATGTAGCTACTGTCCAT
GAGGCAATGACCAAAATATGATAAATGAATACGCCAAAAATATTTACCGG
TACTCGAGCAACTGGATGAAATTTTATCCAGTTGCTTGAGTAACTATTTT
TGACGTATCTTATTACCTGGATGTCTAACCTCCATAAACGGACCAAATGT
ATATCCTGGCTTACCCTCAATCCATTTACTTCATGTTAAACTAGAGAACT
TGTTGCTGTAAATTCTTTTCTTTTCACAGCTACTTCATTTCAAGGTGGAG
GGAAAGAAGGTTTTTGTAGCGTTTTAACTTAATTTAAATTCGCTGTGGAA
ACATTTCTGTAGTATAATAGTAATGTAATGGAAATACATTTTCGCGGTGT
CATAATTTGACTGTGGAGAGGTCATTACAAAAAATGCAAAATAAAATCAC
TGCAGACATTTCTAAGATTTTTTTTTTAATGTCTCTTGCTGTGTTTTTAG
GAAAGGGCCATGGTTTGACCATCACCCCCCTGCCAGCCGGCCACATGATC
GGTGGAACCGTCTGGAGAATAGTGAAGGAAGGGGAGGAGGATGTGGTGTA
TGCCGTGGACTATAATCACAAGAAAGAAAGGTGAAACATTCTTCTCATCT
TGTTGTGCTTGTACATGTACTATGAGTTTGCTTATAGCAGGTATCTGTAG
CCAATATAACTTCCCTTCAACGTAACACACGTTTTGCAGGCACGTGGAGC
TGGTTATATTACACTGAACGACCTGTCACACCTATTACCTTTCCACATCT
GACTGCAACCGTTCTTAAAAGCTAGCAGGTGATATGTACATGTGCCTTAC
AATGACTATGGAGGAGACAAATAACTAAATACCATATTTTGTCATTATTA
TCCATCCTCTTTATAGGTGTTCATCCTGTTGGTGTACATTTTGTCATGTA
TGCCTTCAGTCAGATCCTCTCAGACTAGGTCTGTTTCAGATTCTTCTTTT
AGGAGCAAGAGTCCAGGGAAGCACATTGTAGTCTTCCTGCTGGTGCGTTG
TAACATGTGACCTGCAAGGGCTACCATATTCAGCGTTACTGTCTTATTCT
GAAGCAGATTTAGGCTATAGTTTCCAACTCACAGCAAAGATGGAATTAAC
CAAAGTTACTGTCTTCTGTTGTGTTTCCTTCAGACACCTGAACGGCTGTG
TGTTAGAGGGTATAAACAGGCCGTGTCTGCTCATCACAGACGCCTACAAC
GCCAACTACGTCCAGCTCAGAAGGAAACTCAGGGACGAACAGCTCCTCAG
TAAGTCATTGCTACTGTAACAATGAATCCTGAAAGACGTTACAGTTGTGG
AAATGTCATCAAGTCTGTTGAGGATTCAGTATCACTCTTCAGTGTTCAAA
TAGGCCGTAGATGTGAACAAGTTGTTGTTTTTTCAGCAAGGGACATTTTT
CCATCAAGTTGATTTAAAACCATTTGTTATAGAAAACAGCAGAATTATTT
CTTCTTTTTTTTTTAACGTGTTTGCATTGGAGGTTTGTGGTATGGAAATC
TGAAGATTTGCTGTTCTTTTATGTGAGAAATAATGTGCTTATAGTTGTAC
TGTTGCACTTCTTGACAATAGCAAGCACCGGCTATCACACTGACCAGCAT
TTTTTCAGTTTTTGCTCAATTATGGTGTAGAAGTTTCTTCATGTAACATT
GTTGTTATAATTCTTGCTTGGTTTTTATTTCCAGCTGAGATTTTCAACAC
TGTACGAGATGATGGTAACGTGTTAGTGTCTATCGATACAGCCGGGAGAG
TGCTGGAACTGTCACAACTTCTGGTGAGTCTGAACTATATGCAATATGCT
GTTGTACATGTATCTTCACAGTAATGATAAGATTCATTTTACCAAGTAGA
GTTTAGAAATATTATAACATTTATTTTTACTGGAACTGTCACAACTTCTG
GTGAGTCAGAACTCTGTACACTATACTCACTTGTGTCTTTATAGTAATCA
TAACATTCGTTTTACCATGTAGATTTTAGAAGAGAACTGTATACTGTAAA
TTCATTTATTAATGGGGCTTAATTTTACAGTTGCAGGGGAAAGGAGGTTT
TCAAAATTGTGTCAAGTTCTCAGTTGAAAAAACGCTGTAATACAGTAGAA
ATACAAAACACATGTTTGCAGTGTAATGAACGTTTCAAGCTTTAGAGTAC
ATTGTCACTCATTTGCCAGAAGGAAACACAAACATTTAAATCTGTCTCAA
GCAACCACTCAAGGGACTGAGGAAAAATGGTTGCTGAGGACAGTGTGGGT
TTAACTATGTGAAAATGGATAGGACTGTTTTAATGTGGTTGCCTGTGCAA
GGTGGTTGCTCAACCAAGTTTGGCTGTATAAATGAATGTTTGCCTCTAAA
AGCCATGTTACCACAGATTTATATATTCACCCCTCAGGAGCAATACTGGC
AGAATGCCGAGACTGGCCTGCAGGCCTACAACCTATGCCTGCTGAACAAC
GTGGCCTACAATGTGGTGGAGTTCGCAAAGTCACAGGTGAGGGCTTAGAA
TGATGTGAAAAAATATAGCATGTTTGCAATGACTGAAATTAAGCACAATG
TCATGTTCTTATAGAATACCTGTAAACACACTGAGAGTTTAGCATGTTAG
TGTAGAATACAGTCATAGAACATTTCTATACAGGTCAGTGCTGGTAAGAT
TAGAACAGATCGGGCATTTTTGATGTCTGCCTGCCCCTATCCTGCACTGG
TCCAAAGTAGCATCCAGCTATACAGCAGATTACGGGTTAGAAAATGAGTG
TTGCAGGTAAAATTTGCCCGATGCAGGTAATCTTCAATGTTACCAGCACC
AGCCAAGGTATGTGGAAAAATATTTAGAGCATATTGTATCTGACCATTAC
CTCTTTCCTCATGACCTGAATGAAAAGCGGCCTGCATGCCAATTTGAGCT
TCTCATGAATAAACAAAGGTTCAAACAAACAAAAAATCCCTGTACATGTA
AGTTGATGCTGACACTAACAGAAAATATTGATATTTTCCATGTGTTTGAC
CATGTCCAGGTGGAGTGGATGAGTGACAAGATCATGCGAGTGTTTGAGGA
CAACAGAAACAACCCTTTCCAGTTCAAACACCTGAAGCTGTGCCACAGTC
TCAGCGAACTGCACAAGGTCCCTGATCCCAAGGTAAGCAATATTGAATTA
ATAAATAAAGACCGGTATTATCCATTTTGCCCCATTTGGCTAAATGCAGG
TCAGAAAAAAAGAAGAGTTTACAAATACATCTACATAGTCGGCGGCCCCG
TGTATGAGGGAGCTTCGGGCATAAGCCTCAAACCTCTACATGTAAAAGAA
CCCAACACACTTATCGAGAAAAGTAGGGGTGACCCGGTGTGCTTAGCCAA
AAACTCGAGCCATGGAGAAGCCACATTGCAGTACCACTAGCTACTTGAAA
AAGCATCATGCTTCATCTCAATTGAGGATGACTGCTTTAATTATTTTCTT
TAGCATATGTACTATAATCTAACTTCATCTTGCTTCTTTGTAATGATAGA
AATGTAAAAACAGATTAGGTCATGTGATGGAAGGTTGGTCTGAATGCATA
AGAAATGTAAATTTGTCCATAATAAGTGTATAAAGTTGAGAGTTTTTTGT
GCTATGGTGTCAGAACCAGAAGAACATAGCTGTACTGACGTCTCGGCCTA
GCCTGGAGTCTTGTAGTACGTGTCACTCATGTTATATGTTATTGTTGTGT
TTAGGTTGTCCTTGCATCAGT

Coding sequence (CDS) from alignment at Sc0000062:1265992..1270812-

>transcript:BL96792_cuf14 ID=transcript:BL96792_cuf14|Name=transcript:BL96792_cuf14|organism=Branchiostoma lanceolatum|type=CDS|length=726bp|location=Sequence derived from alignment at Sc0000062:1265992..1270812- (Branchiostoma lanceolatum)
ATCCCGGTCTACAAGATGGGACAGATGTTCATGTATGACATCTACCAGTC
TCGACAGAACACAGAAGATTTCACCATCTTCACCCTGGACGACGTGGATG
CAGCTTTTGACAAGATCGTGCAGCTGAAATATTCCCAGAATGTCCCCATG
AAAGGAAAGGGCCATGGTTTGACCATCACCCCCCTGCCAGCCGGCCACAT
GATCGGTGGAACCGTCTGGAGAATAGTGAAGGAAGGGGAGGAGGATGTGG
TGTATGCCGTGGACTATAATCACAAGAAAGAAAGACACCTGAACGGCTGT
GTGTTAGAGGGTATAAACAGGCCGTGTCTGCTCATCACAGACGCCTACAA
CGCCAACTACGTCCAGCTCAGAAGGAAACTCAGGGACGAACAGCTCCTCA
CTGAGATTTTCAACACTGTACGAGATGATGGTAACGTGTTAGTGTCTATC
GATACAGCCGGGAGAGTGCTGGAACTGTCACAACTTCTGGAGCAATACTG
GCAGAATGCCGAGACTGGCCTGCAGGCCTACAACCTATGCCTGCTGAACA
ACGTGGCCTACAATGTGGTGGAGTTCGCAAAGTCACAGGTGGAGTGGATG
AGTGACAAGATCATGCGAGTGTTTGAGGACAACAGAAACAACCCTTTCCA
GTTCAAACACCTGAAGCTGTGCCACAGTCTCAGCGAACTGCACAAGGTCC
CTGATCCCAAGGTTGTCCTTGCATCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96792gene:BL96792Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96792_cuf14transcript:BL96792_cuf14-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96792_cuf14-E1BL96792_cuf14-E1-1564476830-249753Branchiostoma lanceolatumexon
BL96792_cuf14-E2BL96792_cuf14-E2-1564476830-249750Branchiostoma lanceolatumexon
BL96792_cuf14-E3BL96792_cuf14-E3-1564476830-249748Branchiostoma lanceolatumexon
BL96792_cuf14-E4BL96792_cuf14-E4-1564476830-249746Branchiostoma lanceolatumexon
BL96792_cuf14-E5BL96792_cuf14-E5-1564476830-249744Branchiostoma lanceolatumexon
BL96792_cuf14-E6BL96792_cuf14-E6-1564476830-249742Branchiostoma lanceolatumexon
BL96792_cuf14-E7BL96792_cuf14-E7-1564476830-249740Branchiostoma lanceolatumexon
BL96792_cuf14-E8BL96792_cuf14-E8-1564476830-249738Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000062genomeSc0000062:1265992..1270812 -
Properties
Property NameValue
Transcript idBL96792_cuf14
Biotypeprotein_coding