|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96799_cuf1 >transcript:BL96799_cuf1-protein ID=transcript:BL96799_cuf1-protein|Name=transcript:BL96799_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=395bp
YHGNGMNYRGTWSKTATGAVCVEWTVAEDGYYLKKYPWANLDNNYCRNPT
GLNRPFCLDQDDRQQDCDVIPCDAEICRDRGPPNYGIRSPNKRVFYVGER
VTYTCNEGYALKSGYNGEVRCIEGGRWEFDKPSCSVNHWQRLREELLETY
TETLPPVNVTINFKGAVDLIVELDEKKEQLVASVVIDMTWQDSRLSWDPE
YYDDIDTLSVRDNEIWTPTLTLKKNADPIYKELQRDVPVGLSNDGVVEWS
VETLTTTVCDAHPFLFPADIMECHVCFFLTTATNHTIKCQGGRRASGIGY
NPCNSSSNATTEGEWYRKDKTFAKDNREACFAVRLERIPLFHIATTVGPC
VILVVLMTITFFMPLDRGDRISFGVTILLSMVVSLVFVTEVLPVK Run BLAST on NCBI mRNA from alignment at Sc0000071:386355..390570+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96799_cuf1 ID=transcript:BL96799_cuf1|Name=transcript:BL96799_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4216bp|location=Sequence derived from alignment at Sc0000071:386355..390570+ (Branchiostoma lanceolatum)
CTACCATGGCAATGGCATGAACTACCGCGGTACATGGAGTAAAACTGCAA
CTGGGGCAGTTTGTGTTGAGTGGACAGTTGCGGAAGATGGTTACTACCTG
AAAAAGTACCCCTGGGCTAACCTGGATAACAACTACTGTCGCAACCCTAC
CGGTCTCAACCGGCCATTTTGTTTGGACCAAGACGATAGGCAGCAGGACT
GTGACGTCATTCCGTGTGGTAGGTTGTGCAATGATTTAAATGTGCATCAT
AACTAAATATGTTTCATAACACTTATTTAAAGGTATATGATTATATTTGT
GGTTGATTATGCAATGCACAGCTAATCACATGTAAAGACAAACATTGTAA
ATTGTACTGATCATGTTTGCTTACCCGAACCGTTCGTCATTTTCTCTTTT
GGCCATATACATTTTAAGTGCACTAGCTAGCCAATTAGATTATCACCTTG
CCACTACCTGTTACATTGAATTTTAATGAATTTTAAGAAATGTTTTGTCT
CATACCCTAATTAAGCCAGGAAAGGCTGCAATAGTATGTGTACGCACTTG
TTGTTGCAGATAAACCAGTCATTGTTATTATTTTTATCTTTATTATTATC
ATCATTATTATTTTGAATTTTTGAATTTTAATGAATCTTAAGAAATGTTT
TGTCTCATACCCCAATTCAGCCAGGAAAGGCTGCAATAGTATGTGTATGC
AGTTGTTGTTGCAGATAAACCAGTCATTCTTATTATCGTTATCTTTATTA
TCATCATCATCATTATTTTACATCTTACTGCAACAGATGCTGAAATCTGC
CGGGACAGGGGTCCTCCAAACTATGGCATTAGAAGTCCAAACAAGAGGGT
CTTCTACGTAGGAGAAAGGGTGACTTACACGTGCAACGAAGGGTACGCAC
TTAAGTCCGGGTACAACGGGGAAGTGAGGTGCATCGAAGGAGGCAGATGG
GAATTTGATAAGCCCAGTTGCTCAGGTAATTGTTAAGAGCGTCATCTTTG
CAACAGGTGAATTGTGCATACTTTTAGTAAATCCTACATCTGTTTTTGCT
GCACGTTACTCTCCAAGCAGAGGAGCGGTTCCGGCTGGTTTTTGACATGT
TTTTAGGCGTTTTTGTCGGGCTGTCTACTTTGTCATTTTTTTTTTCTCTC
TAAATCACACCTCTGCCGGCAGATGGAACGATCAATGCCTAATAAACCTG
TGTGGTTTAGAGATTTAAAAAAGGACAAAGTAGACAGCCTAAAATCACAT
CAAAATCCAGCCAGAACCACTCCTCTGCTTGGAGAGTACTGCACGTCTGC
AGAATAATATTGGTAGGTTAACGTTTGAATGGTAAAGAAACATGCAGACC
CGAAAAATTAACTTCACTTGCCGCAGACTACAAACTGTTTCGTCCAAAGC
TGTTTTGATTAAGGTTGGTACATTATGCAAGATCTACCATGCTGGAATGA
GGACTATTACACCATCTTAAAAATTCATTTTTTAGACAACATATGGGCAC
AAAACAATGTCATGATCAATCTAAAATGTACAAGTTTCCGCCCATTGATT
ATCTTCATGTGTGTTAATTTTACACACACCCTCCTGAAGTAAACCATTGG
CAAAGGCTGCGAGAGGAGCTACTGGAGACGTACACTGAGACTCTGCCACC
CGTGAATGTCACCATCAACTTCAAAGGCGCTGTGGACCTAATAGTAGAAT
TGGTAAGTATGTTTATCTCTTGCAAAGTCTGGTTTCCATTATGACATTAA
TTATGGGAGCAAAGATACATCCTGATTCATGCTGTATCTTTTATTTCAGG
ATGAAAAGAAGGAACAACTTGTTGCTTCTGTCGTCATCGATATGGTAAGT
TGGTACAGTTACCAAAGAAGCCCTGTGTTGGCATAGTTATAAGAGAATAT
TATTGTGACGTCATTTTGGCCCATGGACGCTAATTTCATCCACATTTTGT
TTCACAATTAAGACATGGCAAGACAGCCGACTGAGTTGGGATCCGGAATA
CTACGATGACATCGATACACTCAGCGTTCGGGACAACGAAATTTGGACTC
CAACATTGACTCTTAAGAAAAAGTATGTTGTCTCTTCTTTAATTAACCTA
CTTTTAAGTAGTAAATTCATGATTAAAATGTCGCTCATGAAAAAATAGAT
GAAGATTTCTTTTACTAACCAAACCAATGGTCAAACATAGTGTGGTTCTA
CGTTATTCCAGTCTTGTACACTATAATGTTATGTACTAACACAAGAAGCC
ACCATTTCCACGCCTGGTCATATAGACCTTTAACTAACTTACACATGTCA
CAATATTGACAGTCGAACCATATATCACTTAGATGAATTATGGCACTTTT
GCATTAATTATGCAAATTAGAAATGTATTTGCATAACTGGTATCTGCTAA
TGTTCCACCTGCCATAAACTACATATGTCACATATATTTGAGTCCTATAA
TGAAAACACTGCAAATAGACATTTCCCTCATTAATTCTGCAAATGTAATC
TCAATTTGCATAATTTGAACTTCATTATGTACATCTCTGTCTAAGCTACC
TGCATACCAAATACAAACTGTCGTTCCTTTGTTCAGTTAATCTTCTTAGA
AGATTTTGACAAAAACGCCCCTGCAGTTCCAGAGCAAGCTGCTAGGGTGC
TCAAACATATATTAACCACATACACTTCAGCGTATCGCAAGCTATGCCAC
CAAAAAAATCAAGACCATAGCACGTCCAGGTCAAAAGATAAAAAATTGAA
GTTTTGCTGCAGTACCAAGGTCACATACCAGATGGCCCAAAATTCACATT
GACCTTTGTCTTACCAACACCTACCCACAGACTAAATATCATCGTAATCA
ATCCAGCGGCTCTTGAGTTATGCTGACTACAAAAATTCGGAAATACAAAC
ACACAGACACACAGACACACCCAAAACTATATCTCCATTTTTCCTGGAGA
TAATAACCAAAACTTGTTGGCTGCATCGCAGTGCTGATCCGATCTACAAA
GAACTACAGAGGGATGTACCGGTAGGATTGAGCAACGACGGCGTGGTAGA
ATGGAGTGTGGAAACCCTTACGACCACCGTGTGTGATGCACACCCCTTCC
TCTTCCCGGCTGACATCATGGAATGTCACGTTTGTTTCTTTTTAACAACA
GCGACCAATCACACAATCAGTAAGTCTTCTTAACTGCTGTTTATATCAAT
TTCTTTCGTTTTAAGAATGTTGTGCAAACATGGTATTGTGTGTGGTAATG
ATTACAATTTCTGATAATACCAGGACGTAGGAACGGAAAAAAATTACATT
TTAAAGTGGTCTAAAAATTGGTAAAAAAAAAGCACTGGGGCCAAAAATGC
ATATTTTTGGTCAAAATTCGCCAAATTGATCATTTTTGAAATAATCCATC
ACAAAAGTGTTAATAAATGCATATGGGCATATATGTCCAAGGCATCTTTA
TACCAAATTTCAGGTCATTTGGATATAATATCAGGGCACAGAGGGCCAAA
ACATACATTTTTGGTCTGACAATTTAAAAAAAAAAGCATTCTAAAGCCAT
ATATAAAGAATAAGAAATTAGCTATTTGCCCAATCTGCCCTTGTGCTAAA
TTTCAGGTCATTTGGTTGACAGAGATGAATCGATTTGAAGATTTGACAGG
ACAAAGAGTAGAAACATCAGGGAAAAAATATATTTCAACTAACTGTAGTA
TAGTTGAAACGTAGTTAGATAACAGGAGACGAGATTTTGTAACTAGAGTA
TTTTGCTTGAATAGTAGATCAAACTGCGCTATTTTTAACCTTTGATCCAA
TAACATGTTTTAAATACATGGTACATATTGTCTTGCTAATTGATTGCAAT
AGATATAATTGACGATTTTTATAATGATGTGTTGAACATAGAATGCCAAG
GGGGAAGGCGTGCATCAGGCATAGGATACAATCCATGCAACTCCTCTTCT
AACGCAACAACGGAGGGTGAGTGGTACCGTAAAGACAAGACCTTCGCGAA
AGACAACAGGGAAGCGTGCTTTGCTGTTCGTCTGGAGAGGATCCCCCTGT
TCCACATTGCCACTACAGTTGGGCCCTGCGTCATCCTGGTGGTGCTGATG
ACCATCACCTTCTTCATGCCCTTGGACAGGGGAGACCGGATCTCCTTCGG
AGTGACCATTCTACTCTCCATGGTCGTGTCTCTTGTATTTGTGACAGAAG
TACTTCCTGTCAAGGG Coding sequence (CDS) from alignment at Sc0000071:386355..390570+ >transcript:BL96799_cuf1 ID=transcript:BL96799_cuf1|Name=transcript:BL96799_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1185bp|location=Sequence derived from alignment at Sc0000071:386355..390570+ (Branchiostoma lanceolatum)
TACCATGGCAATGGCATGAACTACCGCGGTACATGGAGTAAAACTGCAAC
TGGGGCAGTTTGTGTTGAGTGGACAGTTGCGGAAGATGGTTACTACCTGA
AAAAGTACCCCTGGGCTAACCTGGATAACAACTACTGTCGCAACCCTACC
GGTCTCAACCGGCCATTTTGTTTGGACCAAGACGATAGGCAGCAGGACTG
TGACGTCATTCCGTGTGATGCTGAAATCTGCCGGGACAGGGGTCCTCCAA
ACTATGGCATTAGAAGTCCAAACAAGAGGGTCTTCTACGTAGGAGAAAGG
GTGACTTACACGTGCAACGAAGGGTACGCACTTAAGTCCGGGTACAACGG
GGAAGTGAGGTGCATCGAAGGAGGCAGATGGGAATTTGATAAGCCCAGTT
GCTCAGTAAACCATTGGCAAAGGCTGCGAGAGGAGCTACTGGAGACGTAC
ACTGAGACTCTGCCACCCGTGAATGTCACCATCAACTTCAAAGGCGCTGT
GGACCTAATAGTAGAATTGGATGAAAAGAAGGAACAACTTGTTGCTTCTG
TCGTCATCGATATGACATGGCAAGACAGCCGACTGAGTTGGGATCCGGAA
TACTACGATGACATCGATACACTCAGCGTTCGGGACAACGAAATTTGGAC
TCCAACATTGACTCTTAAGAAAAATGCTGATCCGATCTACAAAGAACTAC
AGAGGGATGTACCGGTAGGATTGAGCAACGACGGCGTGGTAGAATGGAGT
GTGGAAACCCTTACGACCACCGTGTGTGATGCACACCCCTTCCTCTTCCC
GGCTGACATCATGGAATGTCACGTTTGTTTCTTTTTAACAACAGCGACCA
ATCACACAATCAAATGCCAAGGGGGAAGGCGTGCATCAGGCATAGGATAC
AATCCATGCAACTCCTCTTCTAACGCAACAACGGAGGGTGAGTGGTACCG
TAAAGACAAGACCTTCGCGAAAGACAACAGGGAAGCGTGCTTTGCTGTTC
GTCTGGAGAGGATCCCCCTGTTCCACATTGCCACTACAGTTGGGCCCTGC
GTCATCCTGGTGGTGCTGATGACCATCACCTTCTTCATGCCCTTGGACAG
GGGAGACCGGATCTCCTTCGGAGTGACCATTCTACTCTCCATGGTCGTGT
CTCTTGTATTTGTGACAGAAGTACTTCCTGTCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000071 | genome | Sc0000071:386355..390570 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96799_cuf1 |
| Biotype | protein_coding |
|
