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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96813_cuf0 >transcript:BL96813_cuf0-protein ID=transcript:BL96813_cuf0-protein|Name=transcript:BL96813_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=420bp
NECASDRCNSNADCKNTGGSFTCTCKQGFHGNGFECTETNECVSSPCQNG
GDCTDGLKKYTCDCPSEWEGVNCEEDVDECLLQKCHNNSACNNSRGGYTC
TCNEGFYGNGLTQENLICREIILFPYGEEQGDSLLPDTNEHKDISLPFLI
EISLGFPFFGEFYYSLYISDNGLVVFPPTAQSRARREPYPNPSPFRSINT
VSAGFPPMVAVFWGDVDLTTDVGKVWYQVYSDDGSIDKATQAMFEMVTER
MSQSFGDTFVPTWVLVVTWDSVPSVEAAYTKQNPNTFQTVLATDGSDSVA
FLTYKEDEMLWTNETQAVILGYNSANGANFEIIQLADPYRPDQVNGNTGL
KGRWAFKLESDATRKTNYKKLCRDWYNAEPDPSKWIVGEGQCPCTLLQAL
RDRRFTPVFLSPFEIFFFPF Run BLAST on NCBI mRNA from alignment at xpSc0039690:51118..57276+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96813_cuf0 ID=transcript:BL96813_cuf0|Name=transcript:BL96813_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6159bp|location=Sequence derived from alignment at xpSc0039690:51118..57276+ (Branchiostoma lanceolatum)
CGAATGAGTGCGCGTCTGATCGTTGTAACTCGAATGCTGATTGCAAAAAT
ACTGGCGGCTCCTTCACCTGCACCTGTAAACAAGGTTTCCATGGAAATGG
ATTTGAATGTACCGGTAAGAACGATAATAGATATATACAATATTGTTTGG
AGCGGAGGCAAACTACAATTGATACTCATAAGGGAGGCTATGATCATCTG
TAAGTGTATATGTGCTGCACATGTACACACTGTCCCGGTTTTTATTTGGC
TTTTGTTGTGCCCATGAATGTCCTTTTTCTGATAGTGTTTGAGTTTGTAA
TTTATTTTGAAATACCAATAAAGAGAGAGAAAAAAAAAAAGAAAAAAAAA
GAACGATAATAGATATTTCACCATGTCATCATTGTGCTGACCAACGTGTC
GATAATATGCTTCCCTAAGATTTTATTGTAGTACCCGGTGTTACGATTAT
GCATGAAAAAAAGACTTTGTAAAGCTTTTTACATCTTCGTAATTGTACCA
TATCTTAAAATGATCATGTTTCAAGTAGCTCAGAATCTAAGTCGCTCACC
TTTCCAATTATTGACACACAGTGTTGTTTTATTACCATAGTCATACTAAA
AGATTGACTGGTGACAGGGTTATATTGATTATCCCTCCGTGTGTTTTGTT
ATATATATATATATGGTGCAAATTGCTAACGCCGCTTTTCAGTGCTAATG
TGACAGCGATGAATGATAGTACGCGGCCTGTACAAAAAAAGGCATATTGA
CTTCAATTTGGTTCTGGCTGCCTTTGAAAAGAAATTTACTTATCTCAAGA
CTTTTTGTTATTTACTCATACAGAAACCAATGAGTGTGTTTCCAGCCCCT
GCCAAAACGGAGGAGACTGCACAGATGGACTAAAGAAGTACACATGTGAC
TGTCCTAGTGAATGGGAGGGCGTTAACTGTGAGGAGGGTGAGTCATTTAC
TTCGCGCCATTATCAATCATATCGACGATATAGTATCGTTATATTCATGC
CATGTAATGCTATAGAAATATCTCTTTCTAGCAGTATGCCAAGTTATTAC
ATGGAGATCTATCTCTCATCTAAATCACTGTTTCTTTGTGTACAGATGTT
GATGAGTGCCTCCTACAGAAATGCCATAACAACTCAGCCTGCAACAACTC
ACGTGGAGGCTACACCTGCACATGCAATGAAGGTTTTTATGGAAATGGCC
TAACGCAGGAAAACCTCATATGTAGAGGTAAGAAATGATAAATAGCCGTG
GACTAGTGCTTAGCAATCTTACTCTGGATCTAAGGGCGAGGGGCTCAAAT
CCCAATCTACTGTTAAAGCTCTGAACCCCTAATTAAATTTATTTAGTTCC
TGATGAAGGTATAACTCCAAAGTACATGTACATCGCAAATATAATCACCT
TGCTGATGTTCAGTTCGTGCCAGCTGACAGCCTGCAGGCAGACGCTCTCC
TATGTCAGGTAGATTTAGAAGCTTCAGGTGCCAAGTGTTGGGCCTCTGGG
GTACGCAGCACTCTAGAGGAATGTGGTTATGCTTTTGTACGGCAAAGCGC
CCAATAATCGTCTGAAGTACGTCCCATATCATTTCATCGATCTATCAGGG
TTTAAAAGACATTCATTTTCAGATCTTTCTATCCAAAATTCATAACGATA
ACAAAGGTGCAAATGCAAAAAAACTACGAACGTACAGATTATTAAAACAT
TCCTATAACGAAGAAGAATATCCAAAGATTGAAAATGTACGTCACAGACC
AACCGTTACAAAACTAAGGACAAGTTGCCACAAATTGCGAAACGAATCAG
GAAGACATAATCACACCCCTCTAGAGCAAAGAATCTGTCAATTTCGTAGC
CTAGGTAAAGTAGAAGACGAAGTACATTTTATTGTAGACTGTCCTTGTAC
GATAGTGATAGAATAATTATTTTCAGTTATGTGTTAAGTAAATTCCCACA
CTTCAGATACCTGAATAGTAGAGAGAAATTTATATTTCTTACAGCCTTCG
ATAAACCAACTCTAACTAATTACACAGCCTCGAGCTCCTACATTTATACA
ATTACCAAGAAGCGAGAGGAAGTCGAAATTACTAGAGTATGCTAGATGTT
TATATACAGTAATACTCATGAATATGTATATAGTTGTTAAAACCTTTAAG
CTGCCAGTCCCGACTTAATTAGGGATACAGAAATATGCCTTGTGTGCTGG
ACCCGGTTATAACCGGGATAGGGTATTCCCATAACAAAACAGCTTTGCGT
GCGTGTAGCGCGCGAAGCCGGGAAGTTAGGGGAGTTAGCGCCGCCGGGTG
TTTCGCGGGTTTCGTGAGGGAGGTCAGGGGTCAAACATTTTTTATTTTTA
CTTGGCTAAAAAACCTGGCAGCTTAAGGGTTATCATGTGACCTGTGCTTA
GCCCAGTGGGGAAAACATGTTCCATAATAAAGGTCTTCCGTCATCAATGA
GGGTACAGAATGACAAACTTGTAACTTCCCGTTAAGAATAGAAATACGAT
TGCCTTTCAATATGTTAACATTAGTTATATCATACGATGGTTTGTGATCA
CTTAAATACTTTGTAGAAATCATCCTGTTCCCATATGGTGAAGAACAAGG
AGACTCGTTGTTACCTGACACAAACGAGCACAAAGACATCTCTCTTCCGT
TCCTGATTGAGATAAGTTTGGGGTTTCCCTTCTTTGGAGAGTTCTACTAC
AGCCTTTACGTAAGTTCACTTTTCTGTTCTCCCACCACATAGAAAGATGG
ACAGAAGATGTTACATTATGATAAAAGAGTACTACTATCATGTCTGCATT
TTCTTGTTACGGACTGTACGTGCATCTTTAATCAATTCAAATGTAACTGA
TGCATTATTGTTTGAAATTGTCTCAAGTAATTGATGAAACAAAATACCAC
CAGGTTCTTAACGGTGATTAAATGTACAAGATGTAGAAAATGGTAGACAT
AGCCTCAAGTTTCAATCTTGTAGTTCATGATAATTCATCTTGTCTGTATT
TACTCAAAGTCGACCTATGTGACGAAGTTGTGGGAGAATGTAAGGTAAGC
CAAGGTATTCACTCCAAAGACAGGCAAAAACTGTAACTCTGTGCTAAGTC
TTCCGTCGTAGAGACTTGTGGCAATTTCTCTTACTTTCTTGTCAGATCTC
AGATAACGGGCTTGTAGTATTCCCGCCGACGGCACAGTCCCGTGCTCGGA
GGGAGCCGTACCCCAACCCGAGCCCGTTCCGCAGCATTAACACGGTATCA
GCAGGATTTCCTCCAATGGTCGCAGTATTCTGGGGAGATGTCGATCTAAC
AACTGACGTTGGGAAAGTTTGGTATCAGGTAAATTTGTATTTGCTATCTA
TTAAAAATGTGACGTTACATTACATTTCACGGGTCAGTTAGGCAACCAGC
GCTGATGAGGACTGCCCACAAATATATTAGAGAAACATAGAAAATACAAA
GCTTAACATTTGTAATGAATACTTTAGCAAATCTAGGATGAAACATATAA
ATGTAGTCGATACAGCACAACTAAAATGAATAAGGGTAACTGCAGGTAAA
TGCTATATAGTACTAGTTTATAGAATTGATTGACGAGATTATCATAATCG
TCGTCATAAATAGAACTAGAGTTCCACGACCTCATACCTTCGCCAAATGA
TTTTAACCTTTATGACTGACGTATTAGGAGTGTTTCTCATCAATTATAAA
TCATACCAGTTGATTGTATTAAAATATAACATGTCCAAAGTATCAGCTTA
ACAAATTATGAGCTTAACAAAGAAGGTTATGCTAATATTTATCATCAATT
ATGCAAATGAGGCCCTTATTAACATCGTTTGATTCAACGATGTTCACATT
CACATAACTTCCCGATGCCACAAAAAAAGGATTAAATGTATGAAATTGCC
GTCATTTGCCAGTGTGGAATAATACAAGTTACTCATTGAGTATGCAAATT
AGGCCTACATTTGCATATTTTCTATCTATTATCAGTCCTCTCTTCCTCAG
TTACAATTGGAATAGTCATATCATGGAACAAAGTGCATTTTTAGAGTTGC
GTCATTAATTATGCAAATTAGAATCTGATTTGCATAATTATCGTCCAATC
ATACTAAGCATCACACAAGCTATTCACATACCAAAATCATGACCATCCAT
CAAGGCCATCTTGTTATAGTATTTTCTCATTAATTATGCAAATGAGGTCT
TCATTTGCATAGTTCATATCAATTAATATTTCTCTCTTCCTCAGTTACAT
ATGTCACTTGTTTCAGAGTCCTATCATGGAATTTGTCGGATGTATAAACG
TTCCTCATTAATTATGCAAATTAGATACTGATTTGCATAAGAAGTATCTA
ATCATGTACATCATCTCTCAAACTATCTACTTACCAAAAATCATTACCAT
CCATCAAGCCCTTCTTGAGTTATTCCCTTTCAAAGTCAAACGCAAAAGCT
GCTCCTGCGGTCCCAAACCCGTACCACTTACTCTCTGTCCAAAGATCTAT
GTACCACTCAAAAATCAGTTCCATAGCATGTCCAGAACACGAGATATCAA
AACAGGAAGTTCCGCTGCAGTACCGTAAGAAGCCGCTAGGGGGCCCAAAA
TCTAATCGTTTTTAGGTCTCATCAAAACCTACCAACATACCAAATACCAA
AGCAATCCATCCAGGCATTCTTGAGTTTTGCTGGTCCACTACAGACAAAC
AAACGCTACCCTCTGCATAACCTTCTCGGCGAAGGCAATAATGGTACCCG
TTGTAATATTGCAAACTTTAAACATGATAATCATTTAGACTACTATACTT
GCACCAAAATAAAACCCAAAAAGTCAATACCCTCTCCTCTATATGGAAAA
GTCACATTCTCATTACAAATGACAATAGGATAACGTCATCAACAAAGGCT
TGATCAGTGACAGAACTTAAGCAACCTTGCAGCAATTAGAATGTAGAAAT
CATTAAAAATCAGACGAAAATGTGCCAAGATTGCCATCCATCTTTGCAGT
CATCGTACAGATGTATAAATTAAGCTTCAATTATCTTAACATAACTAGCA
TTGCTACTTAACCTTGTTACATAGCAGCATTATTGATATCAATCAGTCGA
TGTCTTTGCAACAAATGTGTTGCCTGGCAAAAACCAAGAAATTACTCTTT
ACCTAGCACCTCAATATCCAATATGTCTGTTCTTGTCGATCACGTTTACA
GAGCAATGGCTGATTCTCTCTTTTTTTCCCTACCAGGTGTATTCTGACGA
CGGCTCTATTGATAAAGCCACCCAAGCTATGTTTGAGATGGTTACCGAAA
GAATGAGCCAGTCTTTCGGCGACACCTTCGTGCCTACCTGGGTACTGGTT
GTAACCTGGGACAGTGTACCATCCGTGGAGGCAGCATACACCAAACAGAA
CGTAAGTCTAACAATCGAGTATTCTGTGCAAATTCTATCAATTTGAAAAT
ACTTTAAAACAATAAAGTTAACCTGCAAGATGTTCCAACTAAATCTTTAT
TTTCGATCCCCCGAACGAAGCAAAAAAGTACAATTGAATAAAGAGAGACA
TTTGTACTTTGAAAACATCTGCTCATATATATATATTTAGTCTATAGAGT
CATGTCTATTATACGAGGTGTCTTGAGAATTTTAAGTCTTCATCCCGTCT
TAACATTCTTGTCATGAGTACTTCCGTGATGGTCATACATTTGTAAGGTT
TTCTATATATAAGATCTAGTTCAATGTCATGTTCTATACTTTTTCAGCCA
AACACATTCCAAACAGTTCTGGCCACTGATGGGTCAGACTCCGTTGCTTT
CCTAACCTACAAGGAGGATGAGATGTTGTGGACCAATGAAACCCAGGCGG
TTATACTTGGGTATAACAGTGCTAACGGGGCCAACTTCGAAATCATCCAG
CTGGCAGACCCTTACCGACCCGACCAAGTCAACGGAAACACAGGGCTCAA
AGGACGATGGGCGTTTAAGTTAGAGAGTGATGCAACAAGGAAAACCAACT
ACAAGAAGCTGTGTCGTGACTGGTACAACGCAGAGCCAGACCCGTCTAAG
TGGATTGTAGGAGAGGGCCAGTGTCCTTGCACGCTACTCCAGGCCCTAAG
AGACCGACGCTTCACCCCGGTTTTCTTGTCACCGTTTGAAATCTTCTTCT
TCCCTTTTC Coding sequence (CDS) from alignment at xpSc0039690:51118..57276+ >transcript:BL96813_cuf0 ID=transcript:BL96813_cuf0|Name=transcript:BL96813_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1260bp|location=Sequence derived from alignment at xpSc0039690:51118..57276+ (Branchiostoma lanceolatum)
AATGAGTGCGCGTCTGATCGTTGTAACTCGAATGCTGATTGCAAAAATAC
TGGCGGCTCCTTCACCTGCACCTGTAAACAAGGTTTCCATGGAAATGGAT
TTGAATGTACCGAAACCAATGAGTGTGTTTCCAGCCCCTGCCAAAACGGA
GGAGACTGCACAGATGGACTAAAGAAGTACACATGTGACTGTCCTAGTGA
ATGGGAGGGCGTTAACTGTGAGGAGGATGTTGATGAGTGCCTCCTACAGA
AATGCCATAACAACTCAGCCTGCAACAACTCACGTGGAGGCTACACCTGC
ACATGCAATGAAGGTTTTTATGGAAATGGCCTAACGCAGGAAAACCTCAT
ATGTAGAGAAATCATCCTGTTCCCATATGGTGAAGAACAAGGAGACTCGT
TGTTACCTGACACAAACGAGCACAAAGACATCTCTCTTCCGTTCCTGATT
GAGATAAGTTTGGGGTTTCCCTTCTTTGGAGAGTTCTACTACAGCCTTTA
CATCTCAGATAACGGGCTTGTAGTATTCCCGCCGACGGCACAGTCCCGTG
CTCGGAGGGAGCCGTACCCCAACCCGAGCCCGTTCCGCAGCATTAACACG
GTATCAGCAGGATTTCCTCCAATGGTCGCAGTATTCTGGGGAGATGTCGA
TCTAACAACTGACGTTGGGAAAGTTTGGTATCAGGTGTATTCTGACGACG
GCTCTATTGATAAAGCCACCCAAGCTATGTTTGAGATGGTTACCGAAAGA
ATGAGCCAGTCTTTCGGCGACACCTTCGTGCCTACCTGGGTACTGGTTGT
AACCTGGGACAGTGTACCATCCGTGGAGGCAGCATACACCAAACAGAACC
CAAACACATTCCAAACAGTTCTGGCCACTGATGGGTCAGACTCCGTTGCT
TTCCTAACCTACAAGGAGGATGAGATGTTGTGGACCAATGAAACCCAGGC
GGTTATACTTGGGTATAACAGTGCTAACGGGGCCAACTTCGAAATCATCC
AGCTGGCAGACCCTTACCGACCCGACCAAGTCAACGGAAACACAGGGCTC
AAAGGACGATGGGCGTTTAAGTTAGAGAGTGATGCAACAAGGAAAACCAA
CTACAAGAAGCTGTGTCGTGACTGGTACAACGCAGAGCCAGACCCGTCTA
AGTGGATTGTAGGAGAGGGCCAGTGTCCTTGCACGCTACTCCAGGCCCTA
AGAGACCGACGCTTCACCCCGGTTTTCTTGTCACCGTTTGAAATCTTCTT
CTTCCCTTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| xpSc0039690 | genome | xpSc0039690:51118..57276 + |
Properties
| Property Name | Value |
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| Transcript id | BL96813_cuf0 |
| Biotype | protein_coding |
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