transcript:BL96816_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96816_cuf1
Unique Nametranscript:BL96816_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96816_cuf1

>transcript:BL96816_cuf1-protein ID=transcript:BL96816_cuf1-protein|Name=transcript:BL96816_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=490bp
XESIWDRFSHTPGKVDRGDTGDVACDSYNKYREDVQLMKNMGLRDYRLSL
SWPRIFPDGTLAGGVNQDGVDYYNNVIDELIANGITPMVTLYHWDLPQAL
QEKYGGWVNETLVEHFNDFATFAFQTFGDRVKNWITFNEPKPVCNKGYET
GTRAPGVRDLTLLSAYRCGHTIIKAHARAYHTYDRGFRSSQGGIVGITLN
LDWAEPRDPDLPTDVQATDHYMQIYSGWFAHPIYVDGDYPPFIKEGLQQV
GLANPGETVPSFSAEDAAYIAGTADFFGLNHYKTRIVTSRDIPVGTAGQT
FRDTIEATVAPEWPQSASSWLYVVPWGLRRLLKHIKQTYGDPDVYITENG
RSDPDVQPPILEDTDRVCYYMTYIDEVLKAIKDDDVKVKSYTAWSFMDNF
EWDKGYTERFGLFYVDFTDPNRPRTPKRSAGFYTDIIANNGFPEGADVTK
MVNDMWGQCRGSGTAGLHDSNGLLALFFTIIALCTSLKWT
Run BLAST on NCBI

mRNA from alignment at Sc0000208:327236..330412+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96816_cuf1 ID=transcript:BL96816_cuf1|Name=transcript:BL96816_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3177bp|location=Sequence derived from alignment at Sc0000208:327236..330412+ (Branchiostoma lanceolatum)
NNNGAGTCCATCTGGGACAGGTTCTCCCACACACCTGGTAAGGTAGACCG
TGGGGACACCGGAGACGTGGCCTGTGACAGCTACAACAAGTACCGAGAGG
ACGTGCAGCTCATGAAGAACATGGGCCTTCGGGACTATCGTTTGTCCCTC
TCGTGGCCGCGAATCTTTCCCGACGGTACCCTAGCGGGCGGCGTTAACCA
AGACGGAGTCGACTACTACAACAACGTTATAGATGAGCTGATCGCAAACG
GCATCACCCCGATGGTGACGCTTTACCACTGGGACCTTCCGCAGGCCCTA
CAGGAGAAGTACGGGGGATGGGTGAACGAAACTCTGGTGGAACACTTCAA
CGACTTTGCAACCTTCGCGTTCCAGACTTTCGGAGACAGGGTGAAGAACT
GGATCACGTTTAACGAACCAAAGCCGGTGTGCAACAAGGGGTACGAGACC
GGGACGCGCGCTCCGGGTGTCCGGGACCTGACCCTGCTGTCTGCCTACAG
GTGTGGCCATACCATCATCAAGGTATGCAGTATCTAAGAATTACTGTCGT
GCTTTTATAGATATACCTATCGAGTATACGTGTGGCGGATACATGTTTGA
TAATACAACTTTGCTAATCTTACCGCATCTTTTTTTAAATGGTATTCAAC
CAAACAAGAGGCATCTGAGAAATATGTGAAGACTAGTTGGTCTTAGTGAG
GCACTGTTTACTTTTTGACCCCGCAAGGCTCATGCAAGGGCGTACCACAC
ATACGACAGGGGCTTCAGATCAAGTCAGGGCGGGATTGTGGGAATCACCC
TGAACTTGGACTGGGCAGAGCCTCGTGACCCTGACCTCCCCACCGATGTC
CAGGCCACGGACCACTACATGCAGATCTACAGTGGCTGGTTCGCCCATCC
CATCTACGTGGACGGCGACTATCCGCCATTCATCAAGGAAGGGGTAAGTT
GGATCTAGGGGAAGCCAACCTCTTTGTCGAAAGGCTACGTCATCGCTATT
CTTCCAGCAGACCCCGATTGCTNTTCATAGCTATCCTTCCAGCAGGCCCC
GATTGCTTCCACGTAACACAGATAAACATGTGCGATTGGATAATGTCCAC
TTACATAAACACAGTGACACCGACGGCGGTTATCACAAAACAATTATTTG
CTAATTGTACAGTCGAAGGGTTACTAGGACAGGTTGCGAATTAATCACTC
AGACATCATTTCTGTTTGGATACCCGCGTTTCTCTGTCTGCTCTTGCCAT
GGCAGTCTGCCTGTATGATATAGTACAGCAGATATAGTATAGTATATTAA
CGAAATACGAGTAAGAATAATCTTTTTCATATTTTCCTCCCTTTCCCACA
GTTACAACAAGTTGGCTTGGCAAATCCGGGGGAAACTGTCCCGTCATTTT
CCGCTGAGGACGCGGCTTACATTGCTGGCACGGCCGACTTCTTCGGCTTG
AACCACTACAAGACCCGAATCGTCACAAGCAGAGACATCCCTGTTGGTAC
AGCAGTAAGTGTTGAAGCTGATAGCACACTCTGTAGCTTTCAATCTTTGA
CAGTCTGCTATTTTAGCGCACACGTTCATATGTGCTGGTAGAAAACGTGA
CTTAAGATCAAACTCTCCGCTTATCACGAAACAAAACAACCTGTCATCGT
AGCTGTGTTCTTTCTTGCATTCGACTGACCCACTACGTCTAACATGTGCC
CTTTCACCGAAATCACCGTGAATTGTACTGAACTGCTTCAGAAACCTTCT
TTTAAGAATGCATTTTTTTCTGCATTTAGGGCCAGACCTTTCGGGACACG
ATTGAAGCAACGGTAGCTCCGGAGTGGCCGCAGTCTGCGTCTAGTTGGCT
GTACGTGGTGCCCTGGGGGCTCCGCAGGCTGCTCAAGCACATCAAGGTAC
GTAAAAATTGCATTTGAACAAACGTTTGTAGTAAAAGAAACTATTACAAA
TATAAGACCCATTGAACCAAACCATGCCCTGTTTGACTGACCTCGTTCAC
AGGCATGCACAGCGAGTTGAGCAAACAGATACAACTGGTCCCAAAGGACG
CATGCGTACTGGAGATGATGTCGGTAACCTTACCTGCAAATAGATACTGT
ACGAAAACGAAATAGACAATGCGTAAAAAATGTCACTATTTTTCAGCAAA
CGTACGGTGATCCTGATGTGTACATCACGGAGAACGGCCGGTCGGATCCC
GACGTACAGCCGCCCATCCTGGAGGACACGGACCGCGTCTGCTACTACAT
GACGTACATCGATGAGGTTCTGAAGGGTAAGCAGCTGCATGTGTGGAAGT
GCTAAGTCTGTAGTAGGCAGTGAAGACTTCCTGCCGTTACATAAGATTAT
CGTCATTTTCCTTTGACTCAGCTCTAAAAATCATAGCAACTAACCACTAC
CTGGTACGCGTACGAGTAAAAAATACGTCGATTTGTAGGCATGCGCAATG
AAAAACTTTCCAGTTGCATTTTAACAGTATTGTCTGCATGATTTTAGCTA
TAAAAGACGACGACGTCAAGGTGAAGTCGTACACCGCCTGGTCCTTCATG
GACAACTTCGAGTGGGACAAGGGTTACACGGAGCGGTTCGGGCTCTTCTA
CGTCGACTTCACCGACCCGAACCGACCTCGAACACCAAAGCGGTCCGCCG
GCTTCTACACCGACATCATCGCCAACAACGGCTTCCCTGAGGGAGCTGAC
GTCACCAAGATGGTCAACGACATGTGGGGGCAGTGTCGAGGATCGGGGAC
AGCCGGACTCCATGACAGCAATGGATTGTTAGCCCTCTTTTTCACCATTA
TCGCTTTGTGTACCTCCTTGAAATGGACGTAATGTCGTTCATTTACCCAC
TGACAAGTGAAATTAATCTAGATACTAGTACATTGTATCTGTTCGCAACC
TTTCCAAACCTATGTGTACTTACGTATACCAATTGATCATGGGTGGGAAA
GTTCTTTATTGATCAGTTCAAATAAATGTCGCTATGTTGAATTTGTTTGA
AATAAATATCTCACTACTTTAATTTAATGGGCTCATAGTCATATTTGACA
GCTATATGTGCGATGAAGTATCAGTTTCAGCAGGGACCGTCGTTACTATG
GTCGCCGTAAGAAAACAGTTAGAAAAAAACATATACTAGTATTTGTTCAA
AACAACCATCAAGAATATAAAGCTCCG

Coding sequence (CDS) from alignment at Sc0000208:327236..330412+

>transcript:BL96816_cuf1 ID=transcript:BL96816_cuf1|Name=transcript:BL96816_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1473bp|location=Sequence derived from alignment at Sc0000208:327236..330412+ (Branchiostoma lanceolatum)
NNNGAGTCCATCTGGGACAGGTTCTCCCACACACCTGGTAAGGTAGACCG
TGGGGACACCGGAGACGTGGCCTGTGACAGCTACAACAAGTACCGAGAGG
ACGTGCAGCTCATGAAGAACATGGGCCTTCGGGACTATCGTTTGTCCCTC
TCGTGGCCGCGAATCTTTCCCGACGGTACCCTAGCGGGCGGCGTTAACCA
AGACGGAGTCGACTACTACAACAACGTTATAGATGAGCTGATCGCAAACG
GCATCACCCCGATGGTGACGCTTTACCACTGGGACCTTCCGCAGGCCCTA
CAGGAGAAGTACGGGGGATGGGTGAACGAAACTCTGGTGGAACACTTCAA
CGACTTTGCAACCTTCGCGTTCCAGACTTTCGGAGACAGGGTGAAGAACT
GGATCACGTTTAACGAACCAAAGCCGGTGTGCAACAAGGGGTACGAGACC
GGGACGCGCGCTCCGGGTGTCCGGGACCTGACCCTGCTGTCTGCCTACAG
GTGTGGCCATACCATCATCAAGGCTCATGCAAGGGCGTACCACACATACG
ACAGGGGCTTCAGATCAAGTCAGGGCGGGATTGTGGGAATCACCCTGAAC
TTGGACTGGGCAGAGCCTCGTGACCCTGACCTCCCCACCGATGTCCAGGC
CACGGACCACTACATGCAGATCTACAGTGGCTGGTTCGCCCATCCCATCT
ACGTGGACGGCGACTATCCGCCATTCATCAAGGAAGGGTTACAACAAGTT
GGCTTGGCAAATCCGGGGGAAACTGTCCCGTCATTTTCCGCTGAGGACGC
GGCTTACATTGCTGGCACGGCCGACTTCTTCGGCTTGAACCACTACAAGA
CCCGAATCGTCACAAGCAGAGACATCCCTGTTGGTACAGCAGGCCAGACC
TTTCGGGACACGATTGAAGCAACGGTAGCTCCGGAGTGGCCGCAGTCTGC
GTCTAGTTGGCTGTACGTGGTGCCCTGGGGGCTCCGCAGGCTGCTCAAGC
ACATCAAGCAAACGTACGGTGATCCTGATGTGTACATCACGGAGAACGGC
CGGTCGGATCCCGACGTACAGCCGCCCATCCTGGAGGACACGGACCGCGT
CTGCTACTACATGACGTACATCGATGAGGTTCTGAAGGCTATAAAAGACG
ACGACGTCAAGGTGAAGTCGTACACCGCCTGGTCCTTCATGGACAACTTC
GAGTGGGACAAGGGTTACACGGAGCGGTTCGGGCTCTTCTACGTCGACTT
CACCGACCCGAACCGACCTCGAACACCAAAGCGGTCCGCCGGCTTCTACA
CCGACATCATCGCCAACAACGGCTTCCCTGAGGGAGCTGACGTCACCAAG
ATGGTCAACGACATGTGGGGGCAGTGTCGAGGATCGGGGACAGCCGGACT
CCATGACAGCAATGGATTGTTAGCCCTCTTTTTCACCATTATCGCTTTGT
GTACCTCCTTGAAATGGACGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96816gene:BL96816Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96816_cuf1transcript:BL96816_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96816_cuf1-E1BL96816_cuf1-E1-1564476830-389210Branchiostoma lanceolatumexon
BL96816_cuf1-E2BL96816_cuf1-E2-1564476830-389212Branchiostoma lanceolatumexon
BL96816_cuf1-E3BL96816_cuf1-E3-1564476830-389214Branchiostoma lanceolatumexon
BL96816_cuf1-E4BL96816_cuf1-E4-1564476830-389216Branchiostoma lanceolatumexon
BL96816_cuf1-E5BL96816_cuf1-E5-1564476830-389218Branchiostoma lanceolatumexon
BL96816_cuf1-E6BL96816_cuf1-E6-1564476830-389221Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000208genomeSc0000208:327236..330412 +
Properties
Property NameValue
Transcript idBL96816_cuf1
Biotypeprotein_coding