transcript:BL96847_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96847_cuf2
Unique Nametranscript:BL96847_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96847_cuf2

>transcript:BL96847_cuf2-protein ID=transcript:BL96847_cuf2-protein|Name=transcript:BL96847_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=577bp
RTLEYGLYLFRLTLTVNETNTGVVVSSTSTSASVDIKAAPLIAGILGGFR
RQVGTGGVTLDAATLSSDPDGVISKSKDLDYRWSCNSTDGVCPALNGGID
GLLTVTLGLETLHSELTFTVEVSAPIRNSVSASQIIEVVRSTIPLTSIIC
DTTYGTCGPKINSGEKMRLSVLCSNCRADPNKYRHNWTLVQTQGVAWTND
DWNMNILNDRSQDHISFRAGVFNTQGTYTVTAIVTDSNTTEAGSAEYSFT
LNESPTVGDCAVHTSNTSEGFFEIQCQGFSDPDLPLRYDFEYTAADVNVA
SVNSTAIINQHLLYSGPVSSTPPIRLPTGDPDEDYELEIVIRVTDVFGAF
AVTRVITNVRPPEEVDEFVETVLERLDVDDVQQTTSSISSAASVLNVANA
TDVENNTRTEARDQMVDILEQVQVLDVQQVKQVSGTLEHVTNKPEELSDD
SQVKAADTLKKLEEVLTTKSSEVGTEELERIAAHLVTGAVNVLEASSESA
EKQREEAQLQNRTTDFKKNEQATTTAFETIDNLALTMISRKNRDEKPTLV
KANEFLMSLVRSSCDGLGARLIQTQED
Run BLAST on NCBI

mRNA from alignment at Sc0000007:6701748..6706663+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96847_cuf2 ID=transcript:BL96847_cuf2|Name=transcript:BL96847_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4916bp|location=Sequence derived from alignment at Sc0000007:6701748..6706663+ (Branchiostoma lanceolatum)
CCCGGACCCTTGAGTATGGGTTATACCTGTTCAGATTAACATTGACTGTG
AATGAGACCAACACAGGCGTCGTAGTGTCAAGTACAAGTACCAGCGCCTC
AGTGGACATCAAGGCCGCCCCTCTCATCGCTGGTATCCTAGGAGGGTTCA
GACGACAGGTGGGTACGGGAGGGGTCACGTTGGATGCGGCTACGCTGTCA
TCTGATCCTGACGGAGTCATATCAAAGAGCAAGGATCTCGACTATCGCTG
GTCCTGTAACTCTACTGGTGAGTGTTGTTGCATACAAGCACACGAGGTCT
TCTCCATCGCTTAGAAATGAGGATATGTAAACTTAATGTTTTAGCTTTCA
ATGATACCATATCGGATGAAGCTATATCATCCTAAGAGTGTCATACCGTT
TGAAATGATATGCTCTCTCTATATCGTGACTGTTTTGCTTCTCTCATAAC
CTGAATGTATGTAACCGTTCATATGTATCTGACTTAATAAATCATTACAG
ATCCCGAATGTCTTCTTCCTTTACGGATTTTCAGTGAATTGACTATGTAA
ACAATGCTACTCCATAACATTGTATTGCAACAAAAACGAGTTTAACCCAC
ACATTGATACAGATGGAGTTTGCCCTGCACTGAACGGAGGTATTGACGGC
CTACTTACCGTGACCCTTGGCCTGGAAACGCTCCACTCCGAGCTCACCTT
CACCGTGGAGGTGTCTGCACCAATCAGGAACAGTGTCTCTGCAAGTCAAA
TCATAGAGGTGGTTCGTTCAACCATTCCACTGACATCGATCATGTGAGTA
TGTAATTCATTTAGTATCTTAATCATTTTCTTTTAATACTACAAATATTA
TCTTAAGAACGGTGATTAAGTTTTGGGCTCCTAAGCAACATCCTTTCCAC
ATGAACTGTAAACTTCTTAGAATAAGTTTCTGCTGTTCCTACTCTATGTC
TTCAATATAACTCTCACCTCACCTCACAGATCCCATGGCTATTCAGCAGC
CTTAGGGGCAGCATAGCGTTCAACATATTAACTATACCATTAATTAAATG
GTATAATCAAACAGTCACACAGATTCTATAGAGGATATCTTGCAAACTAT
CTGGATGTAGGCTAGTAATCTTCAAGACTTTGGACGTTTACAGTTGTGAC
ACAACCTACGGGACCTGTGGTCCCAAAATCAACTCTGGAGAAAAGATGAG
ACTATCCGTGCTGTGCAGCAACTGTCGAGCAGATCCCAACAAGTACAGGC
ACAACTGGACATTGGTGCAGACACAGGGAGTAGCTTGGACGAACGATGAC
TGGAACATGAACATTCTAAACGACAGGAGTCAAGACCACATTTCATTCAG
GGCTGGGGTCTTCAATACGGTACGTACGGAATCTGTTTTTTCTAATCTAG
ATGCTAACAATCTGCTAATTTCAACATACATTGGTCTTGCACGAAATACC
TTTTTCATTACATTTTTGCGAGTGAATCAATTTACCTTTTTATGTATGAA
TGTTGTATCATGTCTTTATTTTCTTTTTTTCCTCTTTAGATTTTGCCATG
ATTTGACTAGATTTATCAAGGGTAAATGTAATATATTCCTATAGATTATA
CACATATTTTACGTCTCATTACCACTTTACAATTCTCCACCATTTGATAT
ATATGAGCAGCAGGGGACGTATACTGTAACTGCTATAGTGACAGACAGTA
ACACAACTGAAGCTGGTTCTGCCGAGTACTCCTTCACGCTGAATGAATCA
CCGACTGTTGGAGACTGTGCTGTCCACACTTCAAATACGTCAGAAGGCTT
TTTTGAGATACAGTGTCAAGGTACTAGTAACAGATTCAACTAAAAGTCAT
ATCCGGGTTCAGCTTTTTTGCCATTGTTATTACATATGGCAGTTTATTAC
AGTTATACTGCTGATTTTGAACCTACCAGTACAGTTTCATGTACTACATT
TTACAGCGTACTGTACTGCTGAAATACTCCATAAGTGGTACATTGATGGA
CTTACAATCCTTATCATGGATGAAGTAAGCCTGTAACGTTAGTTAAACGT
CTATATAGATAACGTCTTTAAAAAAAAAACAGTAGCTTATTAATAAAGTA
AACAAAATCGTGGCCAATTCCCATCCAGGTGCTGAAAATCGACAAAGTTG
TGTAGCAATCAGACATGACATGCTAATACCTTGTCTAATGGTTTCTTGGA
AATATGACACTGTCTTCCAGGCTTCAGCGATCCGGATCTTCCTCTGCGCT
ATGACTTTGAGTACACGGCAGCGGATGTCAATGTTGCCTCCGTCAATTCC
ACTGCCATCATCAACCAGCACCTCTTGTACAGTGGACCGGTCAGTTATTT
GTTCTTATTATCATTCAATGGCCATGGTTACCTCTCTATGCACTTCACGC
CTCTACACTTAAGCTCTTTACAAAATAAGCGTGGTTTAACCACCGTGTTA
CGCGTGTATGATGATGCTATCTATTTATTTTCTGTCCCACATCAGGGCCA
TAGGGAAATGACCAATAATATCTCGACTTAGTCGTAAAGATTTAGGAATA
AGATTTTAGATTGCATTAATAGGTCTAGAAAAAGGTCTTTTGGTGATGCT
GTTCTGTGAAGGCATTATGTTGCAGTAGTGAATGTCCATGTGTGTTTGTA
GAAACTAATTACCAGTACTCTTTTTAAAGTTCATCTGTTGGTAAAAGTCA
TTCTGTATCAAAGTTAAACTACAATTTCCAACACAAGTGTTTGGAATTAC
CAGTGGATCGCTCATTCCGGTGGACTGCTCATACCATGATAAGGACTGGA
CTTGATAAGTCGAAATGCCTGTGTTGGAAATGGTAGTTCAACTTTGATAC
ATAATTACCAATATGTCTCCTGTGCGTGATTTGGTAAATCACTTAATTAA
ACATGTCTTCACGATTGATCATGACCCAGGTCTCCAGCACCCCTCCGATC
AGACTGCCCACAGGAGACCCAGACGAGGACTACGAGTTGGAAATCGTCAT
CCGTGTGACGGACGTCTTCGGGGCCTTCGCCGTCACAAGGGTTATAACAA
ATGTAAGGACGTATCATCCATGTCATGTACACAAATGATATTTCCAAAAA
GGTTCTACGTAGAATCGGAACGTAATATACTTTGTTAATGTTTTGATAAT
ATAGGCTCTGTAGGATTTCTTCCACTTTTGCTGTGTTAATAACATACCTA
GCTTGATAAAGTAAGTGGGTGTTGTTGCATGCACAGTGTAGAATTCCATG
TAATTTTTTCTACTTTGATCGTTATTTTGTGATTAGTGAGTGTATGTACT
TATTCACATGTAGAAATTGAAACCTTTTTGGTTCCTTTTTCTTTTGCCCA
TAAAGAACTTTGCCATCAAAGATTTTATCATTTCCAGGTAAGGCCACCTG
AGGAAGTGGATGAGTTTGTGGAGACCGTTTTAGAAAGGTTGGACGTCGAT
GACGTACAACAGACTACGTCATCCATCTCAAGTGCTGCGTCTGTGCTGAA
CGTCGCTAACGCAACAGACGTCGAGAATAATACAAGAACTGAGGTTTGCT
TCTCGTCAATGCACTTTGTGTAGAACGTCATGCTTCCCCTACAGCAACTA
TGGGGATGATAATGATAATGATGATGATGATGATGATGACGATGCTGCTG
ATGGTGGTGGTGATGCTGATGACATTTTACATTGCAAATCTTGCATGACA
TACACAAATAACAGCTGAATCCAGTCATTAGGGGGAAATATCGATACCCA
TCAGACTAGAAATAGAGGAAACTTTATCTCCGTGAACGTGTGGAGATACT
AGCGTATAATAACATTAAATAGTTATCCAAAGGCAAAAACCCAGACGCAT
TAATGTACATTGAATCCATTTCTGACCAGCGTGGTGTAAACTACACTACG
TTATATACTCACATCTTTAATATTGCACGATGTTGACCACACAGGCCCGG
GATCAGATGGTGGATATTCTGGAGCAGGTGCAGGTGCTGGACGTGCAGCA
GGTGAAACAGGTGTCAGGCACGCTGGAGCACGTGACCAACAAGCCGGAGG
AACTGTCGGACGACTCGCAGGTAGGGCCATATTTTATTTGTATCTTAGAG
AAATATTTTTCCGGAAGGAAAGCGCGCTGCTAATTGGGACATTCTGCAAC
CAATGACAAATATTTTGAGAGTAAAGTATCTTCTGTTACTTTATTCTGAC
AGGTAAAGGCTGCCGACACTTTGAAGAAGTTAGAAGAGGTGCTGACGACT
AAGTCATCAGAGGTTGGGACGGAGGAACTAGAGAGAATAGCTGCCCATCT
TGTAACAGGTAAGAAATTCTGGAAAACGGGCAAAAAGAAACTGAAGTTAC
CAATTATACGCACACTCTTTCATGCAATGGTCCCAAATTCATATTGTTCA
CTACCACTACCTTTTGTAGTGCAATAAAGATCAGATGAAAAACCCAATTG
AGAAACATTAAGCAAAGCATATTTCTCGTTGACAGCCAAATCTAAGCCTG
ATGAGTTCTTTTTGCCTTAAAGGAGCTGTCAACGTCTTGGAGGCTTCAAG
TGAAAGCGCAGAAAAGCAGAGGGAGGAGGCACAACTTCAGAACAGGACAA
CGGACTTCAAAAAGGTGACATTGCCTAACACAAGATCTATTCTCTTCAAG
TACGTATACGTTTGATTTCTCTAATAGTATGTTGCCATATACGTTGATGC
CATGTAATACGATTTGTCATTTACTCTGACATTACCAGAACGAACAGGCC
ACCACAACAGCTTTTGAAACAATCGACAACTTAGCATTGACGATGATCTC
GAGGAAGAACCGGGACGAGAAACCGACTCTGGTCAAGGCTAACGAGTTCC
TGATGTCCCTGGTGAGGTCCAGCTGTGACGGACTCGGGGCAAGGCTGATA
CAGACACAGGAGGATA

Coding sequence (CDS) from alignment at Sc0000007:6701748..6706663+

>transcript:BL96847_cuf2 ID=transcript:BL96847_cuf2|Name=transcript:BL96847_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1731bp|location=Sequence derived from alignment at Sc0000007:6701748..6706663+ (Branchiostoma lanceolatum)
CGGACCCTTGAGTATGGGTTATACCTGTTCAGATTAACATTGACTGTGAA
TGAGACCAACACAGGCGTCGTAGTGTCAAGTACAAGTACCAGCGCCTCAG
TGGACATCAAGGCCGCCCCTCTCATCGCTGGTATCCTAGGAGGGTTCAGA
CGACAGGTGGGTACGGGAGGGGTCACGTTGGATGCGGCTACGCTGTCATC
TGATCCTGACGGAGTCATATCAAAGAGCAAGGATCTCGACTATCGCTGGT
CCTGTAACTCTACTGATGGAGTTTGCCCTGCACTGAACGGAGGTATTGAC
GGCCTACTTACCGTGACCCTTGGCCTGGAAACGCTCCACTCCGAGCTCAC
CTTCACCGTGGAGGTGTCTGCACCAATCAGGAACAGTGTCTCTGCAAGTC
AAATCATAGAGGTGGTTCGTTCAACCATTCCACTGACATCGATCATTTGT
GACACAACCTACGGGACCTGTGGTCCCAAAATCAACTCTGGAGAAAAGAT
GAGACTATCCGTGCTGTGCAGCAACTGTCGAGCAGATCCCAACAAGTACA
GGCACAACTGGACATTGGTGCAGACACAGGGAGTAGCTTGGACGAACGAT
GACTGGAACATGAACATTCTAAACGACAGGAGTCAAGACCACATTTCATT
CAGGGCTGGGGTCTTCAATACGCAGGGGACGTATACTGTAACTGCTATAG
TGACAGACAGTAACACAACTGAAGCTGGTTCTGCCGAGTACTCCTTCACG
CTGAATGAATCACCGACTGTTGGAGACTGTGCTGTCCACACTTCAAATAC
GTCAGAAGGCTTTTTTGAGATACAGTGTCAAGGCTTCAGCGATCCGGATC
TTCCTCTGCGCTATGACTTTGAGTACACGGCAGCGGATGTCAATGTTGCC
TCCGTCAATTCCACTGCCATCATCAACCAGCACCTCTTGTACAGTGGACC
GGTCTCCAGCACCCCTCCGATCAGACTGCCCACAGGAGACCCAGACGAGG
ACTACGAGTTGGAAATCGTCATCCGTGTGACGGACGTCTTCGGGGCCTTC
GCCGTCACAAGGGTTATAACAAATGTAAGGCCACCTGAGGAAGTGGATGA
GTTTGTGGAGACCGTTTTAGAAAGGTTGGACGTCGATGACGTACAACAGA
CTACGTCATCCATCTCAAGTGCTGCGTCTGTGCTGAACGTCGCTAACGCA
ACAGACGTCGAGAATAATACAAGAACTGAGGCCCGGGATCAGATGGTGGA
TATTCTGGAGCAGGTGCAGGTGCTGGACGTGCAGCAGGTGAAACAGGTGT
CAGGCACGCTGGAGCACGTGACCAACAAGCCGGAGGAACTGTCGGACGAC
TCGCAGGTAAAGGCTGCCGACACTTTGAAGAAGTTAGAAGAGGTGCTGAC
GACTAAGTCATCAGAGGTTGGGACGGAGGAACTAGAGAGAATAGCTGCCC
ATCTTGTAACAGGAGCTGTCAACGTCTTGGAGGCTTCAAGTGAAAGCGCA
GAAAAGCAGAGGGAGGAGGCACAACTTCAGAACAGGACAACGGACTTCAA
AAAGAACGAACAGGCCACCACAACAGCTTTTGAAACAATCGACAACTTAG
CATTGACGATGATCTCGAGGAAGAACCGGGACGAGAAACCGACTCTGGTC
AAGGCTAACGAGTTCCTGATGTCCCTGGTGAGGTCCAGCTGTGACGGACT
CGGGGCAAGGCTGATACAGACACAGGAGGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96847gene:BL96847Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96847_cuf2-E1BL96847_cuf2-E1-1564476830-80026Branchiostoma lanceolatumexon
BL96847_cuf2-E2BL96847_cuf2-E2-1564476830-80028Branchiostoma lanceolatumexon
BL96847_cuf2-E3BL96847_cuf2-E3-1564476830-80030Branchiostoma lanceolatumexon
BL96847_cuf2-E4BL96847_cuf2-E4-1564476830-80032Branchiostoma lanceolatumexon
BL96847_cuf2-E5BL96847_cuf2-E5-1564476830-80034Branchiostoma lanceolatumexon
BL96847_cuf2-E6BL96847_cuf2-E6-1564476830-80036Branchiostoma lanceolatumexon
BL96847_cuf2-E7BL96847_cuf2-E7-1564476830-80038Branchiostoma lanceolatumexon
BL96847_cuf2-E8BL96847_cuf2-E8-1564476830-80040Branchiostoma lanceolatumexon
BL96847_cuf2-E9BL96847_cuf2-E9-1564476830-80042Branchiostoma lanceolatumexon
BL96847_cuf2-E10BL96847_cuf2-E10-1564476830-80044Branchiostoma lanceolatumexon
BL96847_cuf2-E11BL96847_cuf2-E11-1564476830-80047Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96847_cuf2transcript:BL96847_cuf2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:6701748..6706663 +
Properties
Property NameValue
Transcript idBL96847_cuf2
Biotypeprotein_coding