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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96870_cuf5 >transcript:BL96870_cuf5-protein ID=transcript:BL96870_cuf5-protein|Name=transcript:BL96870_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=580bp
CELPLSDQSHTNYELALAMAEDGQGTNSVNVMTINGEFVATATGAVHPNL
QHGFNESSWVDLTVTGRFTVPTDCAGKTYVTLVVSPGTAAGLLVDGYPDN
DRNALQLGNIYCSQDQIDVRITEFSVSTEDKLIINTPTPFVLRGEITVAG
ITSVTPSDLPIFDFRFYLSHDAELDVTSDPEVVYDYTPQQMAVMTRQYGT
GSHAFALSDVLRIDNGTYAEFYGAGPTYLGVRLDAFDPDPSDDIIGAIDE
SSETNNDIIIPIFVHHPKDFALTAFSIELDPRSPLEKLYENTPTTVIIDL
SLQNLGEELPPDDITFKLLLNTRNSLEGAFDTQAEMYYGTQQAKLRGAIP
AFPYTLNVVGIRATFTVPIGMCPILRFVCITHAIGEIAVYGDTNTDNDFA
CVDVTAGNVEKDCTKGLALTDVTISPGQLFANQDTDMTFDLLLSNMGTRV
PSITSSRTLFDMRLYVNTEPSLRNAVVMETVQWNFGSEEAKLRSEIAAKP
GRVMMEGLIAQFRFNDAMCATYSYICLEYVPNIPDDDLTDNFQCRSLVSG
TFKKECDLGLYISSYSYDFDPPVLYVDEDI Run BLAST on NCBI mRNA from alignment at Sc0000007:184327..188365- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96870_cuf5 ID=transcript:BL96870_cuf5|Name=transcript:BL96870_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4039bp|location=Sequence derived from alignment at Sc0000007:184327..188365- (Branchiostoma lanceolatum)
TGTGAGCTCCCACTCTCCGACCAATCACACACAAACTACGAACTCGCGCT
CGCCATGGCAGAAGATGGCCAGGGGACAAACTCTGTCAATGTCATGACCA
TAAACGGCGAGTTTGTTGCCACGGCAACAGGCGCCGTTCACCCAAATCTA
CAACACGGGTTCAACGAGTCGTCGTGGGTGGATCTTACCGTTACTGGACG
GTTCACAGTACCGACAGACTGTGCGGGAAAGACGTACGTAACCCTAGTGG
TTTCGCCAGGAACTGCAGCCGGCCTCCTGGTGGATGGATATCCCGACAAC
GACCGTAATGCTCTTCAGCTGGGGAACATTTACTGCTCACAAGGTGAGGA
AAGAAAGAATTTCACATTCAATGCATAGATAGATAGAATTATAGTGTGAC
ATGCCACATTGACTGTAGTAATGGCCAATAAGAAGGGTAAGATATTAGTC
AGAAGACTGAATGGATAACAAGAAACTTAAAGCTTTTTTGTCAGGAAAGA
AAGATAGGACTCCAGTGAAATCCAGTCAAAGATTGTCTATCACATCGAAT
TCAAGCCAAATATAGCAGCATCCATCGTTGGTAAGGGATTGTGATGTCCC
CAATTCTCCCAACTTAGAGGCTTCTCAGAGAGGCAGTGTTCTCGCCATAA
TTTTTTCACAGCATAGGGGTCAGGTACAGAAGGCCAACTTTACGCGGCGC
AAGCTACGAAGAAATTACCACAGAGTAGGGAGTCCGGCTTGTTCCCCCGG
AAAAGTTTTGAATTCATAACCCAATGAGACACTATTTCCTGCATTTTGAG
GGATAAATTTTGTGAAGTAAAGTTTTTCCTCTGTTACAGCCTCATTCTAA
AGCCAAATCTGAACTTTTTATAAGATTTATGAAGGGTCACAAGGTTCTTT
CCAGAAAGAAGCACCCCTATGCTGGTTGAAACACAGCATAGGGGTCCAGA
CCATAGCATAGGGGGCCCCTATGCTGAAAAGGCCTGGCGAGAACACTGTG
AGGGCTACTATATATGTAACACTCCTTATGAATACTAAACATACTCTTTT
ATCTCATTAGATCAAATTGATGTTCGGATCACCGAGTTCTCAGTCAGCAC
GGAGGACAAACTCATCATCAACACGCCGACGCCGTTCGTGCTCCGCGGGG
AAATCACCGTCGCGGGCATCACCTCGGTAACGCCCTCCGACCTCCCCATC
TTTGACTTCCGCTTCTACCTGTCCCACGATGCCGAGCTGGACGTGACCTC
CGACCCGGAAGTGGTTTACGACTACACCCCTCAGCAGATGGCGGTGATGA
CCAGGCAGTATGGAACTGGGTCTCACGCTTTCGCACTGTCCGATGGTAAG
GATTTGTTTGATGTGTTAGTTATTGAATGTAGAAAAAGATTGCTCAACAG
GATGTGACCTCTGACCTGAAAGTGATTTATGGAGTGACACAGATGATTAA
CTCAGTCCTTCACACTATCTGATGGTAAGAGCCAGTACCCAAGTCAAACT
TCTGCTCACTGCGGCACTGATAAATGTTGATAATTAAGCATCATGTTATT
AGTTATGATGAGAGCTATGTAACTCACCAGGACTACAGTGAGTGCAGAAA
AATTTGATTAACTCACACTGAGAAGGACCCCTTTACTCTTATCAATTAGT
GTGACGGAAATCCTATATGTCACGTCTGAGAGAATGTCCCTAACCAAAGC
ATCTTGAGCTCTCAGTCCTTTTATGATATACATGTACTCATCCTCATTTC
AGTGTATAATGCTCATTTCTCAAGAGTGGAAACTTTTTTTCTTCAGTTTT
GAGGATTGACAATGGCACATATGCAGAGTTCTACGGCGCCGGTCCGACTT
ACCTCGGGGTTCGACTTGACGCCTTCGACCCAGATCCTTCTGATGACATC
ATCGGAGCCATCGACGAATCATCGGAGACCAACAATGACATCATCATTCC
CATATTTGTCCATCATCCAAAGGGTAGGAGAAACACTCCTTATACAGATT
TTTTTTAAAGAAATAATGCTGGCCAAAATGATAAGAGCTGCAAGATAGGA
AATCTGTGAATCTGATGTGAAGTATCACGGGAAAAGAAATTTGGAATGTG
CATGTTTTGCAAATTTCATCATCATCATCATCATCATCATCATGATCACC
ATCATTCGGCCTGTATTTGGGCCATTCTCAGTTGCTTTTATCTAAGTTTG
CTGCTAAACATGCTAAATAAAGGCATTCTATTTGCTTTTGTTGACAATTT
GTGTACTTTGCAATTGTCTTCAAAGATAACCATTGATTTAAAGACAAAAA
CACTACAGTTAAGTGCTTAGAAAATATATCTGTTTACTAAAGAAAAAACA
ATAACATGTCACATATCATACATGTACACTTTAATGTAATTTTGATACTT
ATTTCACTTTGATCCCACAGATTTTGCACTGACGGCTTTCTCCATCGAAC
TCGACCCACGATCGCCACTCGAGAAACTCTACGAAAACACGCCGACCACC
GTCATCATCGACCTGTCCCTCCAGAACCTGGGGGAGGAACTCCCTCCCGA
CGACATCACCTTCAAACTCCTGCTGAACACACGGAACTCACTAGAGGGCG
CTTTTGACACACAAGCTGAGATGTACTATGGTACCCAGCAGGCTAAACTG
CGCGGCGCCATACCAGCCTTTCCATACACACTCAATGTGGTTGGGATTCG
GGCTACTTTTACAGTTCCAATAGGTATGTGTTTCCTTAGTTAAAGATCTT
TAGGCCTATTTTGGTTCTAAGTTATCTCAAAAGTTTAAATAGCAAAAGGA
CAGGATATCAATGAAGATTAAAACAGATTACTGGGAGGAAAAGTTGAACC
TGACTATAAAAATGACTTTGCAGATATTCTTCCTACAAAACTGATGATCT
ATAATGTTTCATTCTGTTAAAACTGACCGTACCATTTCACAACTTTTCTG
CAGGTATGTGTCCTATCCTGCGGTTTGTCTGCATCACCCACGCGATCGGC
GAGATCGCGGTTTATGGGGACACCAACACTGACAACGACTTTGCCTGCGT
CGATGTCACTGCGGGGAACGTGGAGAAGGACTGCACTAAAGGTGAGTATT
ACACTCATCCTGGTTACTGAACAAAAACATTTGTTTGAGTCGAAATCATA
CATTTACAAAAATCAGTCATGATTTAGCACCCAAGTAGCCTCCTTCAAAG
ACTTCTCGGAGCGCCAGCATTTATTTTTCTGGGGGGAGTGCTGATTCATC
ATCAGATTTTGAAAAAAGCCAATGTTCTCTAAATGCTGGGGTAATAGGTT
TCTGCACCCCAAGAATTTAGATCTGAAATACTGCCAAACCTGTACTACGT
AAACTACCATTGCATAAGAAACCCCATTGTGGCCACTTTATGCTGATCCC
TTAGATAATTTTCCCCATTGACACAAGCACCACCAGTCCACATAGACCAG
ATTTTATCAGTCCCCAGCAGAGCTGCTCTTCTTGGGCAGGTTAGACTGTA
TTCACATTTTAAGTTTCAATATTTTCTTTTCTCTTGTCCATCAGGGCTGG
CGTTGACCGATGTGACCATCTCTCCCGGACAACTTTTCGCCAACCAGGAT
ACGGACATGACCTTTGACCTGTTGCTAAGCAACATGGGAACACGAGTGCC
TTCAATAACATCATCAAGGACTCTGTTTGACATGAGACTTTACGTGAACA
CGGAGCCTTCGCTACGGAATGCCGTTGTCATGGAAACGGTTCAGTGGAAC
TTTGGTTCTGAGGAGGCGAAACTGCGGTCGGAGATTGCAGCTAAACCAGG
GAGAGTGATGATGGAGGGTCTCATAGCGCAGTTCCGATTCAACGATGCCA
TGTGTGCGACGTACAGCTACATTTGCTTGGAGTACGTCCCAAATATCCCT
GACGACGACCTCACGGACAACTTTCAATGTCGCAGCCTAGTTTCCGGAAC
CTTCAAGAAAGAGTGCGACCTTGGACTGTATATTTCCAGCTATTCTTACG
ACTTTGACCCTCCAGTTCTGTATGTGGACGAAGACATCG Coding sequence (CDS) from alignment at Sc0000007:184327..188365- >transcript:BL96870_cuf5 ID=transcript:BL96870_cuf5|Name=transcript:BL96870_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1740bp|location=Sequence derived from alignment at Sc0000007:184327..188365- (Branchiostoma lanceolatum)
TGTGAGCTCCCACTCTCCGACCAATCACACACAAACTACGAACTCGCGCT
CGCCATGGCAGAAGATGGCCAGGGGACAAACTCTGTCAATGTCATGACCA
TAAACGGCGAGTTTGTTGCCACGGCAACAGGCGCCGTTCACCCAAATCTA
CAACACGGGTTCAACGAGTCGTCGTGGGTGGATCTTACCGTTACTGGACG
GTTCACAGTACCGACAGACTGTGCGGGAAAGACGTACGTAACCCTAGTGG
TTTCGCCAGGAACTGCAGCCGGCCTCCTGGTGGATGGATATCCCGACAAC
GACCGTAATGCTCTTCAGCTGGGGAACATTTACTGCTCACAAGATCAAAT
TGATGTTCGGATCACCGAGTTCTCAGTCAGCACGGAGGACAAACTCATCA
TCAACACGCCGACGCCGTTCGTGCTCCGCGGGGAAATCACCGTCGCGGGC
ATCACCTCGGTAACGCCCTCCGACCTCCCCATCTTTGACTTCCGCTTCTA
CCTGTCCCACGATGCCGAGCTGGACGTGACCTCCGACCCGGAAGTGGTTT
ACGACTACACCCCTCAGCAGATGGCGGTGATGACCAGGCAGTATGGAACT
GGGTCTCACGCTTTCGCACTGTCCGATGTTTTGAGGATTGACAATGGCAC
ATATGCAGAGTTCTACGGCGCCGGTCCGACTTACCTCGGGGTTCGACTTG
ACGCCTTCGACCCAGATCCTTCTGATGACATCATCGGAGCCATCGACGAA
TCATCGGAGACCAACAATGACATCATCATTCCCATATTTGTCCATCATCC
AAAGGATTTTGCACTGACGGCTTTCTCCATCGAACTCGACCCACGATCGC
CACTCGAGAAACTCTACGAAAACACGCCGACCACCGTCATCATCGACCTG
TCCCTCCAGAACCTGGGGGAGGAACTCCCTCCCGACGACATCACCTTCAA
ACTCCTGCTGAACACACGGAACTCACTAGAGGGCGCTTTTGACACACAAG
CTGAGATGTACTATGGTACCCAGCAGGCTAAACTGCGCGGCGCCATACCA
GCCTTTCCATACACACTCAATGTGGTTGGGATTCGGGCTACTTTTACAGT
TCCAATAGGTATGTGTCCTATCCTGCGGTTTGTCTGCATCACCCACGCGA
TCGGCGAGATCGCGGTTTATGGGGACACCAACACTGACAACGACTTTGCC
TGCGTCGATGTCACTGCGGGGAACGTGGAGAAGGACTGCACTAAAGGGCT
GGCGTTGACCGATGTGACCATCTCTCCCGGACAACTTTTCGCCAACCAGG
ATACGGACATGACCTTTGACCTGTTGCTAAGCAACATGGGAACACGAGTG
CCTTCAATAACATCATCAAGGACTCTGTTTGACATGAGACTTTACGTGAA
CACGGAGCCTTCGCTACGGAATGCCGTTGTCATGGAAACGGTTCAGTGGA
ACTTTGGTTCTGAGGAGGCGAAACTGCGGTCGGAGATTGCAGCTAAACCA
GGGAGAGTGATGATGGAGGGTCTCATAGCGCAGTTCCGATTCAACGATGC
CATGTGTGCGACGTACAGCTACATTTGCTTGGAGTACGTCCCAAATATCC
CTGACGACGACCTCACGGACAACTTTCAATGTCGCAGCCTAGTTTCCGGA
ACCTTCAAGAAAGAGTGCGACCTTGGACTGTATATTTCCAGCTATTCTTA
CGACTTTGACCCTCCAGTTCTGTATGTGGACGAAGACATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:184327..188365 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96870_cuf5 |
| Biotype | protein_coding |
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