transcript:BL96872_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96872_cuf1
Unique Nametranscript:BL96872_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96872_cuf1

>transcript:BL96872_cuf1-protein ID=transcript:BL96872_cuf1-protein|Name=transcript:BL96872_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=341bp
GEFNDDQYLQVDLGEDMVFTGVVTQGKSGTSEWVTRYRLLYSDDGELWQY
YKDDSGQPVEFEGNRDPDTPARQLLDKPITTRFVSFNPVQWNNRISMRVE
VLGYSATDKDRDNFMLATDADVKFSPQSAKALLDIMTRDPNVGAVCARTH
PLGSGPMVWYQMFDYAMGHWFQKVANSVLGTVLCCPGCFSVYRAKAVRDA
LPTYATKVTKAEEFLTKDMGEDRWFCTLLVEKGWRLEYTAVSEDSTYCPE
EFDEFFNQRRRWIPSTVANQMELLRKWANGQMINDYISRLFILYQGFLFF
SMMIGPSTVILIIAAGLELVVGNIGSSIIPTVVILFLVFVA
Run BLAST on NCBI

mRNA from alignment at Sc0000007:794773..801219+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96872_cuf1 ID=transcript:BL96872_cuf1|Name=transcript:BL96872_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6447bp|location=Sequence derived from alignment at Sc0000007:794773..801219+ (Branchiostoma lanceolatum)
CTGGGGAGTTCAATGATGACCAGGTACGCCGTGTAAATAGAATTTAGTCT
AAAACCAGTTTTCACCTTCGTAGTTATACGTTTGAACGTCGTGAGCATGC
GCAGATATCCGTTACTGGGGAGTTCAATGATGGCCAGGTACGCCGTGTAA
ATAGTTTAAAATCAGTTTCACCAATATCACGGGGTATAACGTACGTCACG
GGATGGCCAGACACATTCGGTGGTCGCAGAGATCTATCAGCCGCAACGCG
CAGACACATTCGACGCGCCGCGGAAAAATCAGCCGTCCGCGCGGACCTAT
CAGCCGCAACGCGCAGACAAATTCGACGCCGCGCGGACCTATCAGCCCTT
CGCGAGGAAAACTCAGCCGTGGGACAGCGCCATCAGGTGTCTCACTACTG
CCTTCAGAGAGCGCTGGAAAGGCCGCGCCAAGGTAGGTCCTCCACAATTT
CCTTCTCTAGCGTCATATAGAGACATCGACTGGTAATCTAACTAGGCCTA
TCAGGTGCCAGACTATCTTAGGGTCATCCGGAGCCTGAAATAATCGGCAG
GTCTTCAAATTAAGTCGAGATATAGGGAGAACAGTTCTCAATCGGTGACA
GACCACATCGAAGTTATCAAGGTAAACAGTGGCTACTGCCGTATTTTGGG
CCATTAGAAGCAAAGACATCGGCGGTTTTGACGTCTTTTAGTGTGATTGG
GTGTCCAGAACAACGTAACATACTCTGGAATTGATATAATATGCCCACAG
AGCGAAAATATGTGGTAGAAGTGATACCGCTATATAACGCCCCCCTCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTCTACACATGGTGGTTCGTACTGAAGGATGGGGGAGGGGGGCGTT
ATATAGCGGTATCACTTCTACCACATATTTTCGCTCTGTGGGCATATTAT
ATCAATTCCAGAGTATGTTACGTTGTTCTGGACACCCAATCACACTAAAA
GACGTCAAAACCGCCGATGTCTTTGCTTCTAATGGCCCAAAATACGGCAT
TAGCCACTGTTTACCTTGACAACTTCGATGTGGTGTGTCACCGATTGAGA
ACTGTTCTCCCTATATCTCGACTTAATTTGAAGACCTGCCGATTATTTCT
GGCTCCGGATGACCCTAAGATAGTCTGGCACCTGATAGGCCTAGTTAGAT
TACCAGTCGATGTCTCTATATGACGCTAGAGAAGGAAATTGTGGAGGACC
TACCTTGGCGCGGCCTTTCCAGCGCTCTCTGAAGGCAGTAGTGAGACACC
TGATGGCGCTGTCCCACGGCTGAGTTTTCCTCGCGAAGGGCTGATAGGTC
CGCGCGGCGTCGAATTTGTCTGCGCGTTGCGGCTGATAGGTCCGCGCGGA
CGGCTGATTTTTCCGCGGCGCGTCGAATGTGTCTGCGCGTTGCGGCTGAT
AGATCTCTGCGACCACCGAATGTGTCTGGCCATCCCGTGACGTACGTTAT
ACCCCGTGAAATTGGAAAATAGCAATGCATGTGGACGTTGTGAGCATGCA
CTGNGCATGTACTGACATTATTTACTTACTTACTTACTTACTTAAGCCTA
CTGCCCATCATTTGGACATAGAGCACTCACTAGATTCCCCCATGTACTGA
TATAAACAGATTGAAATCCATTGCTGCAATCAATTGAACTGGCCATCCAT
TGAATGTAGATCTATGTTGCTGACAGTCAAGAATACATTATCAATTAAGA
TTTTTTTTCCATGACATTTTCATTTTTTATTTCCATTCTCATAAACAGCA
AACAAAATCATCACGTTAACCGTACGAGGTGTACATTGAGACGGATGTTG
TTTTCTGTAATGTATGTTAGTGCCATAGCTGCATTTTATTGGATACATGG
ATACTTTATATCCTCCATTAGCTATCATACAAGTAACAAGTGACTCCTTC
ATGTATTTTAAACTCTTTCCATATCCCATTTCAGTACCTACAGGTCGACC
TGGGAGAAGACATGGTGTTTACGGGAGTTGTGACCCAGGGCAAGTCGGGT
ACGAGCGAGTGGGTGACGCGGTACCGCCTGCTCTACAGCGACGACGGCGA
GTTGTGGCAGTACTACAAGGACGACTCCGGACAGCCGGTGGTGAGTCGTG
CAGTTGCGTTCCACCGCCAATGGGTCATAGCAATAGTGACCCCCCACCCA
CGCACACACACACCAACAACATACACACCCACCCTCCCCACAGATAGCAT
GTTCCAGAATACGAGATATAAAAACTGGAGTTCGGCTGCAGTACCCTAGA
AAGCCACCAGAGGGGCTTTGACCTTCGTTTTCCCTATCCCTACCTCTACC
CCTACCAAATTGTCACAAGGACCCAACCACAGCTTCTTGAGTAATGATGT
TCACATACAGACAAATGTACACAAATATGTACAAATACACAAACACACAC
ACATATATTTATAGTAAAAAAGGTAATAGTACTATCATATCAAAATTAAA
CGGTGATTGCTACTACATCATGGACATAGTATAATATCGTAAATCATTAC
AAAGACAGGACTAAAATCACGTTGTTTTTCAAATCCCCACTTTCACCAGG
AGTTTGAGGGGAACCGTGACCCAGACACCCCCGCGCGTCAGCTGCTGGAT
AAGCCAATCACAACGCGTTTCGTCAGCTTCAACCCCGTCCAATGGAACAA
CCGGATCAGTATGCGGGTAGAGGTGCTGGGATACTCGGCTACTGGTAAGC
CCCCCTCCCCCTCCCACTGGACCCGCGGCACGCTGGCGGTGTCGCTGCGT
CCTTAACTGGATTCGAGATACCCTTTACTTTATAATGGTAATATCATTCA
AAACGTACAGGTATGACCAAAAAGACAACAAAACACACAAAGCTTAAAAA
GATTCGTTTTTTGTCGATGGAATTCGTTGAGTGCTTTGTCAATTTGATCG
AACGCAGCGAAGCCGCCAGCGTGCCGCGAGTCGTTGTGATTGTACAAGTA
TGGTCTTCTTCGGATAATTGTTCATTCGTGTCTAGAAAATAATATCTGTA
TCTGTATAGTCTGCACAACCACAGCATGCGCATCAATATATATGAGGCTT
TGCTTTAATCCATGGTCCATGGATGTTTCGACGCCTTTCCCTATTTGAAA
CGAGTTTTTCTTTATCAGCGGCACCAAATATATGATAGCTTGTCTACTAC
AGAAAATTCAAGTAAATTCAATACTTTTGCATTCAATTTGCTAATTGAAT
AATCTTGTTCCCAAATGGTCTTTTGTATATCTCATGTATTCTTTTGCTCT
ACCCACCAGACAAAGACAGGGACAATTTCATGCTGGCCACCGACGCCGAT
GTCAAGTTCTCGCCCCAGTCCGCCAAGGCCCTGCTGGACATCATGACCCG
TGACCCTAACGTGGGTGCCGTGTGCGCGCGGACTCACCCCCTGGGGTCGG
GACCCATGGTCTGGTACCAGATGTTCGACTACGCCATGGGGCACTGGTTT
CAGAAGGTTATGTCATGTCGCCCTCTGTGAATGTTGTTGCCATATATAAG
TGCCTTGTTCTTGTTTTTGTATTAGACAACATTCCTCAGTTGGGGTCAGG
TACATAGGAAGGTGCCCTTCGCTATAATTGGTACGATTTTAGTTGCAGGT
GTACCGTATCATTGAAGTCTAACTGCTTCTGATAGAAATAACACACACAT
AGTTTTTCTTCGTCTATTTCCTAGATGCAAAGAGTCAAGTAAAGAATCTG
CCCTTTTTATTTTAAGTTTGAAAACTACACCTCTCTAGGTTTATATTATT
TCCGTTTACATTTCATAATCAATGCATCTAATCAAGAACATTTTCTTCTT
AACAAAAGCTCAAAGCTGCTGCTTCAAAGTTCATACAGACAGTTAGCCCT
AGCTCATAACGCTATTGCTAAGATATTGTAATCTTACTTGTAGGTGGCGA
ACAGCTTCTGATAGAAAACACACACACACACACATAGTTTTTCTTCGTCT
ATTTCCTAGATGCAAAGAGACAAGTCAAGAATCTACTTCTCAATTTTAAT
TTTGAAAACTACACACATTAAGTTTTACATTACTTCCGATTTCATGCATT
TTATAATCAATGTTTCTCATCAAGAACATTATATTTGATGTATTCTTCTC
TTCTTTTAAGAAGATTGCGTTCATTCTGTTCAATACAAAAAGTTAACGTT
AGCTCACAAAGGCTATTGCTAAGATATTGCAATCTTACTTGTAGGTGGCG
AACAGCGTGTTAGGTACAGTCCTCTGCTGCCCCGGCTGCTTCAGTGTGTA
CCGAGCGAAGGCCGTCAGAGACGCGCTGCCGACCTACGCAACAAAAGTGA
CCAAAGCTGAGGAGTTCCTCACCAAGGACATGGGAGAGGATCGATGGTTC
TGTACTCTTCTGGTTAGTACTTATTACACTAGAGTCCATGATGAAACGGT
ATCATAATATAATGGCAAAGTTAGGAATAGTATAACCTGTGCCTTTGAGA
ATAGGAAGTACAATTATCTACTAGTATTATGTATGTAAAAATGTTGACAC
AAGATTCGTATCCAACTGCACATTGCAGACGATACGACACACCTTATATT
AGTATACGTAGTCTTCTTCAGAAGTGATGAATACTAATTATCTCCATGTA
AAATGGAGATATAGTTTTGGGTGTGTCTGTGTGTGTGTCTGTTTCAAAGC
TTCATTGCGTCAATAGATCATAAAAATCCGGTGTTTTACCCTACAGGTAG
AGAAGGGCTGGCGGCTGGAGTACACGGCTGTGTCCGAGGACAGCACCTAC
TGCCCGGAGGAGTTTGACGAGTTCTTCAACCAGAGGAGGCGCTGGATCCC
CTCAACTGTCGCCAACCAGATGGAGCTCCTGCGGAAATGGGCGAACGGTC
AGATGATCAACGACTACATCTCCAGACTCTTCATCCTATACCAGGGCTTC
CTTTTCTTCTCTATGATGATCGGACCGTCCACTGTCATCCTCATCATTGC
TGGTAAGTGTCTTCACTTGATATACATACCTTCTTTTTCTCTGACAAGAA
TGCATTTACATTCTTCCTTTTAGCTCTTGACCTAGCATGCAGCTGTATCC
GCGTGATAAAAGTACTTAGCACACTTTGCACACTATGATATACGCAAAAA
GTAATTACAGGCGCAAGGCTTTAGCGTATGCATGATTTTATACCGATCCA
ATACACGTAGATTTAGATGGCTACCTTGTCCCTCCAATGACATGAACTAG
GTCTAGGGACTAGCTAGGTAGGTAGTTAGGTAGACAGGTAGGTAGACACT
GTCCTTATCAAGGTGTGGTATTGACTATTACATCTCTGCAGAGATTGACC
CCCCCCCCCCCAAGTCTCTTTAGGGCCGACAAATGCTAATGACAATGAGT
GTTACTTGAATGTCAAAGATCATAATTAGAAGGCGACAGATAGCTGATTA
TCCCTCTTGTTGACAGCTGGCCTGGAGCTGGTTGTTGGTAACATCGGAAG
CAGCATCATACCGACTGTTGTTATCCTGTTCCTGGTGTTCGTGGCGT

Coding sequence (CDS) from alignment at Sc0000007:794773..801219+

>transcript:BL96872_cuf1 ID=transcript:BL96872_cuf1|Name=transcript:BL96872_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1023bp|location=Sequence derived from alignment at Sc0000007:794773..801219+ (Branchiostoma lanceolatum)
GGGGAGTTCAATGATGACCAGTACCTACAGGTCGACCTGGGAGAAGACAT
GGTGTTTACGGGAGTTGTGACCCAGGGCAAGTCGGGTACGAGCGAGTGGG
TGACGCGGTACCGCCTGCTCTACAGCGACGACGGCGAGTTGTGGCAGTAC
TACAAGGACGACTCCGGACAGCCGGTGGAGTTTGAGGGGAACCGTGACCC
AGACACCCCCGCGCGTCAGCTGCTGGATAAGCCAATCACAACGCGTTTCG
TCAGCTTCAACCCCGTCCAATGGAACAACCGGATCAGTATGCGGGTAGAG
GTGCTGGGATACTCGGCTACTGACAAAGACAGGGACAATTTCATGCTGGC
CACCGACGCCGATGTCAAGTTCTCGCCCCAGTCCGCCAAGGCCCTGCTGG
ACATCATGACCCGTGACCCTAACGTGGGTGCCGTGTGCGCGCGGACTCAC
CCCCTGGGGTCGGGACCCATGGTCTGGTACCAGATGTTCGACTACGCCAT
GGGGCACTGGTTTCAGAAGGTGGCGAACAGCGTGTTAGGTACAGTCCTCT
GCTGCCCCGGCTGCTTCAGTGTGTACCGAGCGAAGGCCGTCAGAGACGCG
CTGCCGACCTACGCAACAAAAGTGACCAAAGCTGAGGAGTTCCTCACCAA
GGACATGGGAGAGGATCGATGGTTCTGTACTCTTCTGGTAGAGAAGGGCT
GGCGGCTGGAGTACACGGCTGTGTCCGAGGACAGCACCTACTGCCCGGAG
GAGTTTGACGAGTTCTTCAACCAGAGGAGGCGCTGGATCCCCTCAACTGT
CGCCAACCAGATGGAGCTCCTGCGGAAATGGGCGAACGGTCAGATGATCA
ACGACTACATCTCCAGACTCTTCATCCTATACCAGGGCTTCCTTTTCTTC
TCTATGATGATCGGACCGTCCACTGTCATCCTCATCATTGCTGCTGGCCT
GGAGCTGGTTGTTGGTAACATCGGAAGCAGCATCATACCGACTGTTGTTA
TCCTGTTCCTGGTGTTCGTGGCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96872gene:BL96872Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96872_cuf1-E1BL96872_cuf1-E1-1564476830-74058Branchiostoma lanceolatumexon
BL96872_cuf1-E2BL96872_cuf1-E2-1564476830-74060Branchiostoma lanceolatumexon
BL96872_cuf1-E3BL96872_cuf1-E3-1564476830-74062Branchiostoma lanceolatumexon
BL96872_cuf1-E4BL96872_cuf1-E4-1564476830-74064Branchiostoma lanceolatumexon
BL96872_cuf1-E5BL96872_cuf1-E5-1564476830-74066Branchiostoma lanceolatumexon
BL96872_cuf14-E9BL96872_cuf14-E9-1564476830-74068Branchiostoma lanceolatumexon
BL96872_cuf14-E10BL96872_cuf14-E10-1564476830-74071Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96872_cuf1transcript:BL96872_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:794773..801219 +
Properties
Property NameValue
Transcript idBL96872_cuf1
Biotypeprotein_coding