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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96884_cuf0 >transcript:BL96884_cuf0-protein ID=transcript:BL96884_cuf0-protein|Name=transcript:BL96884_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=558bp
DIDECQTNNGGCDRICSNSAGSYACSCDVGYRLLDDDRSCQDVDECAGPD
NGCTQSCENNIGGFACTCKEYYSLAGDGKTCEPTTSCSNTTNCTQLCAVI
NGTEVCDCNSGYSLEADGFTCVDFNECDNAANNSCDPTNGQCNNELGSFN
CTCNAGYELESGGGTLCNDINECQTSNGGCEQVCNNIAPSFNCSCNPGYL
LNSDGRTCEVINVTTPAPAACASITCLPVGIASCSMMSGQPTCSCSAGYA
LDGSNGQLCVDVDECSTSCQGNNTICTNSPGSYSCECKAGYYSQATQGNT
VTCLVSRTFEANIKIANLAYTSDLGDADSQAFKDLASSVEQNLDTLYSTQ
LGADFQGTTVTGFTNGSVVADYVINLASTSTQTSSNLAASLSSAIASSNG
SLAFDASSITVSDINECNLNTTSCADVATCNNTEGSYFCTCPAGWTDVSP
TGSISGSACQRDTPVVITTSPPLGIILGSVFGGIAFIIIVVLIIWILSNK
KSSVGVVEVTHAAAPDDVEAQDHGPSGHPPSRQFLVETAPPAQPTSVALP
GTPESSEA Run BLAST on NCBI mRNA from alignment at Sc0000241:4958..11562- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96884_cuf0 ID=transcript:BL96884_cuf0|Name=transcript:BL96884_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6605bp|location=Sequence derived from alignment at Sc0000241:4958..11562- (Branchiostoma lanceolatum)
CAGATATTGACGAATGTCAGACAAACAACGGAGGCTGTGATCGTATCTGC
TCCAACTCGGCAGGAAGTTACGCGTGTTCGTGCGACGTTGGTTACAGACT
GCTGGACGACGACCGCTCTTGTCAAGGTTTGTGGCTAGAAGCTCATCTTA
ACATCACTCGTTTATTTGTCATCAAAAAGATGGGTCAAGTAGTAATGTCT
TGTTATTAGTCAGTTCAGCTATACTTGTTAAAACAATGCCTTTAAAGATA
TGTCAGAATCTTTACTTTTGCCTCCAGACGTTGACGAATGCGCCGGGCCC
GACAACGGTTGCACACAGTCCTGTGAAAACAACATTGGTGGCTTTGCCTG
CACCTGTAAGGAGTACTACAGCCTTGCTGGCGACGGGAAGACCTGTGAAC
GTGAGTGTCTTCAATACCAGCCGCTTTGTTCTGGACATTCACCTTTAACA
CACTGAAATAGCCGTTTGACACCCAATTCCCTATTGGTTACAGAGTTAGG
CAGCAGGGAGAAGGTTAAATACCCCCTCACCTTTGCTGATAGAGTCCCCT
TTAAGTTGTTCCATGAAATAACAAGCCTATTCATTTTAGCTAGTTAGACA
ACCATTGGCTGAACATAGTTTGAAAAAAAAACAATTGGAACAGAAAGCCA
AACGAGTCGTTTAATGTTCGACTGCCACTCGCCTAACAGACATCTCGCTA
ACAAGAAAAGTCTTATCTTTACAGCGACCACTTCGTGCAGTAACACCACC
AACTGCACGCAGCTCTGCGCCGTCATTAACGGGACTGAAGTCTGCGACTG
CAACAGTGGATACAGCCTGGAGGCCGACGGGTTCACCTGCGTTGGTAGGT
TTATAATTTACCTTTATCTTCATCCATAACTGTTTTTTTTTTACCTTTTA
CCAGATATTTTTATGAAACCATACCGGAGAAGGAGGTAACGTATTTCAAG
CTATTATATCTGCTCGAAAACTGATGATAGAATATAATTTGCTCGTGAAT
AATTTTCCGTAGACTTCAACGAATGCGACAACGCGGCCAACAACTCCTGT
GACCCCACCAACGGACAGTGTAACAACGAACTCGGCAGTTTTAACTGTAC
CTGCAACGCTGGGTACGAGCTCGAGAGTGGCGGAGGCACGCTCTGTAACG
GTGAGCAGAGAAGTATTCTACTTACAATGACTTTAGATACTTTAGATATA
AAGCACGAGACTTCTTTTATGAATTTGATATAGAGGGGGGAGATAGCTAA
ACTTTACCGGACACTTGCATCCACAGCATATTTCTCTACATTCTCTAACT
GCATATTGTCCTTAAACGATCTTTGCCTTACTTTGCCTTAATCTCATCAC
CTTCAATTGGTTGCGTGGTAAAATTTCCCTTTTTTTCCCATACAAGACAT
AAACGAATGCCAAACATCGAATGGCGGTTGTGAGCAGGTGTGTAACAACA
TAGCCCCGTCCTTCAACTGTAGCTGTAACCCCGGCTACCTGCTGAACTCG
GACGGAAGGACTTGTGAGGGTGAGCGCATACATTTCTTTGTTTTGAATGA
TATAAAAGTGACGACCGATATTCATAGAAGAAACATAAGCAGCGTTAGAA
ATGCAAGAACACAACGATCATGCTTTGTGGAAAGGGCTGTTATGGCGCTG
ACAATGAAGATACACTGTACGCTTTGAACTGTCTACATATGGTCAGATCT
TTATGTTCTAAAACTTTTTCTCTGTATCTTGTCACAAGCAGTAATAAACG
TGACGACACCAGCACCTGCTGCATGTGCCAGTATCACCTGCCTGCCTGTC
GGCATCGCGTCCTGTTCCATGATGTCCGGGCAGCCTACGTGCAGCTGCAG
TGCTGGTTACGCGCTGGATGGCTCCAACGGGCAGCTTTGCGTCGGTGAGA
TTTCTAAGTTTCCTGCACTGTTGGTTATCAGAAAGTGTCCCTAGAGTGAT
TGCTCAGTTCGGGCTGTGCAGAGAGTTGCCACCATTAGTGCCATGGAAGC
AAGAGTTCAACGATATTCTCATAAATGTTTTCATGACCCTCGTATAAGAA
AGCAGCATCAATAGAAATTATAAATTACACAGTAGTGTCATAGGCGATAT
GGATGTTGGTTATCTTCCATTCCCTTCTTCCAGCAGTACATTTAGTACTA
TATGGTTCTATGATAACGGCCAAGTAAACTTCGTATATTGTCTGTTCATT
TGTAGATGTTGACGAATGCTCTACAAGCTGTCAAGGTAACAACACCATCT
GCACCAACTCGCCGGGATCGTACAGCTGCGAGTGCAAGGCAGGGTACTAC
AGTCAGGCTACCCAGGGGAACACTGTTACTTGCTTAGGTGAGTGCTTATA
TGTCTAAGACGAATCGGGGTCTTCGCAGAAACACGATGATAGTCCCTGCA
CACATTCCAAAAAGAATCACCAACGTGACAGTCGGTAGCTGGGTCATAAC
TGTATGGTATGCGGACGTGTATTTATGCTGCATTTACTGTAACTGACCCA
AGTTTATAAAATTTAAATTTAATCGAATTTCTTTTGTAATGGAATTCTCC
ACATATGTTGTAGGGCTGCACTTTTTAATTTTCGTCAATACATGCCAAAC
TTTGACCTTGATGCATGGCTTCCTTTTCTTCAGTTTCAAGGACATTTGAA
GCGAATATCAAGATCGCAAACCTGGCGTACACGTCCGATCTGGGGGATGC
GGACTCTCAGGCTTTCAAAGATCTAGCGTCTTCAGTTGAGCAGAACGTGA
GTATTCTACTTTTCACGACAGAGGTATTCAATATGATATCATCATGCCCT
GTTCATATATCTACCAATGTATACACAACTCGAGAAAACNTCTATTAAAA
AACGAGACAATGTTATACAGTCCTGACGCAGCATCAACGTTACCAACATA
CTGTTCTAGAGCGATAGCATGCACACTATTAGGTAGATTGTCATTATACT
GTTCTTCATTTTCATTTATCAGATTAGTTAGATATTGGAAATAGTACAAT
TGCCATGTATATGCATAGATTCTACAAGTTGCCATATATTGACATTGTAC
CTGTTGCAATTGTCGCGCAATAAAGTAATTCTTCTATACACACAGCTTTA
TGGTTACTACGGGGCTGCTTTTGAATAAGAACAAAATCACGTGCTTACAT
GTCCCTTCCATCCACAGTTGGACACCCTGTACAGCACTCAGCTGGGTGCG
GACTTCCAGGGCACAACTGTTACTGGATTCACAAACGGGAGCGTGGTAGC
AGACTACGTCATCAACCTGGCTTCTACTAGCACACAGACGTCATCAAACC
TGGCTGCCTCCCTTTCATCTGCGATTGCATCTTCAAATGGCTCCCTTGCC
TTTGATGCCAGCAGTATCACTGTGTCCGGTAAGTAAAGATATATTAAGCT
TGAACTGAAAGTATGATAAGATGTTATTTCTGTTGGCCGTGATTCTGAAG
TTAGTTAGCGATGAGCTCATAGCCATTCTGATGTGTGTTTGTACATTTGA
CAGGTGGAAGAGAACATTAGCAGTGGGTTCATAGCTAACACCACATCTAA
TAGTCTTGTTATGATAAACATTTTTAAGTATGAGGGAAGAAAATAAAACT
GATTATTCTTTGGTCTGTAAAATTCACACTGTCTAATTCATGGCATTGTC
ACGACACCAATCCTGAAACTGACAAGGTGTGTGGACCGGACAAGCATTTT
GAAGTAAAATGAAGGCCTTGACTTGATTTGACTTGACATCTTGTTCCAGA
TATCAACGAGTGTAATCTAAACACCACCAGCTGTGCAGATGTCGCCACCT
GCAACAACACGGAGGGGTCGTACTTCTGCACCTGTCCAGCTGGATGGACG
GACGTATCTCCAACGGGTAGCATCTCCGGCTCAGCTTGCCAACGTAGGTG
TCAAGTTCTTTGTGCACATGCTGTCCTGCAAGTTAACGTTAGAGATATGT
TAACGAAACTGCAGTATCAAGTACGTGGTATCTTGGTGAACACGTGTGTC
CTTGAGCACTATATAAGCAGATGCTTTAACAATGTTTTGCTGTTAGAGTA
TTTCAGAGATTACGAACAATGCCATGGCACAACGACTTAATTTATAGGAG
AGAATAATGGTGTAGTTTGGCATAGTTTAAGTGTGATGTATAGACAGGAT
TTTCACAGCCCTAACCTTACTAATCATTGATAATGGACAATGCTGGCGCG
TTCGTGAATGGACTTCAAAAGTTCTATACTAAGTTTCAAACTGTGTTCCT
CTCCCATATGAATAAATAATACAAAACCACCTTGTACCTTCCCCAGGAGA
CACACCTGTCGTCATCACTACAAGTCCTCCACTTGGCATCATCCTAGGTT
CAGTGTTTGGAGGCATCGCTTTCATAATCATTGTCGTACTCATCATCTGG
ATACTTTCAAATAAGGTAACGTTTTATCTCATTTCTCTATTTTTTCTGGT
TGTACTCTAAGAATAANACGTTTTATTTAATTCCTCTATTTTTTCTGGTT
GCACTCTAAGAAGAATTTTCGTAGACTAGTGTCTTGGTGAGTAGTGTTTG
GGTGAGTGTTATCAGTGCATCTCAGCTGATCTGGGGATTAAGGCTTATTA
CGTAAGCTCAACATATTAAACCTCTTTAACAAAGGAGCTATATTTCTTAA
CATCATGTATGTATATATTGAGTTAAACATTTTGTGGGTTTAGAGAGGTA
TGAAATGTCGATGTAAGCCTAATTTGAAGTAGCCTTTATTTTTGGGATAG
GAGGAATATTTGATTTACACTTTGGGCCGATAAATGGTATATATAGTCTA
TTGCATACGACTAAAGTAAAAGTTTGCATGATTCTTATCTTTGTCTTATC
CAGAAATCATCTGTTGGCGTGGTGGAGGTAACACATGCTGCAGCGCCTGA
TGACGTGGAAGCGCAGGACCATGGGCCATCAGGCCACCCTCCATCCCGGC
AATTCTTGGTGGAAACTGCGCCACCAGCCCAACCCACCTCAGTCGCACTA
CCTGGAACACCTGAGAGTAGTGAGGCATAATAGACTCAAACCGACAACGA
AGGAAATTAGAATACCATCTCATTAATGAACATCATGCACCACTGAACAA
AGCCACATAAACGTTCGAAACTCAGACCTCATCCTCAGCTAACAAATATG
TAGTACTTTACCAGGACGCAGCCACCTATAGGGTGATAATTTTTGGGTAA
ATTTCAACACTAATCTGGAACGACCTTTTTTCCCAGTCATCATTTGTTTT
TCATTGACGGATAGAAGTTACCATTACGTCTTAACAGACCACGTTTCTAG
GGATTACATGGAGAGGTGAGGCCGAATGCCAAAGTATGGTGACTTATTTT
TGCTGAATTCATACTCTTATTATTTGTTGTGGGAACAACTTAATACATAT
GCGCCGGCTGGCGGTTCTGTCCCGAACTTCTCTCAAGGTCTGATACTAGG
TGAAAATGATGACGTGTACGGTTGTTAGACTATCTGTTCTTCATGGAAAC
CGAAAGCGGTTGGTTTGTGCCTACACAGCCACTATAATATAGTACAGAAT
AATTCCGGTGTGATTTGATGTTCAGTTTTTTTGTGAAGTGAAGTTCGGCT
TTATTGAACTTGCTGTTGCCTTAACAAATCCCGCTACTAGGGACTACATG
GGGTGATGTGACCGAATGCCGAAGCACGATGACTACATTTTTATCGAATT
CACACCTTTAACGTTTCCAGTGCTGAACTGTTTTAAGGTGTGATACTAGA
TGAAAAAGATGATATGCTTAGCTATTAGGTTGCTACTCCATGGAAACCGA
ATGCGGTTGATTTGAAATTTCTTTGTTGATAAGGTTCCCGCTACTAGGGA
CTACACGGGGCCATGTGACCGAATGCCGAAGCACTATGACTACATTTTTA
TCGAATTCACACCTTTAACGTTTCCAGTGCTGAACTGTTTTAAGGTGTGA
TACTAGATGAAAAAGATGATATGCTTAGCTACTAGGTTGCTACTCCATGG
AAACCGAATGCGGTTGATCTAGAATGTGATTTGGTGTTCTTCATAAGTAG
GACTTCTCTTGCTGTTATCTTGATATACCTCGCTACTAGGGACTACATAG
AAGCCGAATGCCGAGGCACGATGACTTCTTTTTATCGAATTCACATCTTA
TACTTTGACATATGTGTGAATACACGCCCCCTGCCGGCTCTGTAGTGAAC
TGTTCTAAAGATGTGATACTAGAGGAATATGATGACGTGCTTGGCTATTA
GGTTGTTTATTCTCTATGGAAACCGAATGCTATTGGTTTATGATCGCACA
GCAAGCGGTTCAAATATACATTTTTTAACAACTGACGCGTATTTTGTGTT
CTCATTTCTACATATATGGTTCAAGAAATATGTCATCAATGATATTATTG
TTAAGCTAGCAGTACAAACACTTTCTCGATTCAACTAAGTACTGCTGCGT
GTCCTGTCGTGCGGAAATCACCGATAGATGACAAATGGATTAATTTTCCT
CCTCTAAGGATTGTGTGTCACAGGCACGCAGTGGTGCTTCGCCATTGTGA
GTTGCCAAGAAGGCAACATAACACAATATGTTAAGGTCATACTACGTAAT
CCGTG Coding sequence (CDS) from alignment at Sc0000241:4958..11562- >transcript:BL96884_cuf0 ID=transcript:BL96884_cuf0|Name=transcript:BL96884_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1677bp|location=Sequence derived from alignment at Sc0000241:4958..11562- (Branchiostoma lanceolatum)
GATATTGACGAATGTCAGACAAACAACGGAGGCTGTGATCGTATCTGCTC
CAACTCGGCAGGAAGTTACGCGTGTTCGTGCGACGTTGGTTACAGACTGC
TGGACGACGACCGCTCTTGTCAAGACGTTGACGAATGCGCCGGGCCCGAC
AACGGTTGCACACAGTCCTGTGAAAACAACATTGGTGGCTTTGCCTGCAC
CTGTAAGGAGTACTACAGCCTTGCTGGCGACGGGAAGACCTGTGAACCGA
CCACTTCGTGCAGTAACACCACCAACTGCACGCAGCTCTGCGCCGTCATT
AACGGGACTGAAGTCTGCGACTGCAACAGTGGATACAGCCTGGAGGCCGA
CGGGTTCACCTGCGTTGACTTCAACGAATGCGACAACGCGGCCAACAACT
CCTGTGACCCCACCAACGGACAGTGTAACAACGAACTCGGCAGTTTTAAC
TGTACCTGCAACGCTGGGTACGAGCTCGAGAGTGGCGGAGGCACGCTCTG
TAACGACATAAACGAATGCCAAACATCGAATGGCGGTTGTGAGCAGGTGT
GTAACAACATAGCCCCGTCCTTCAACTGTAGCTGTAACCCCGGCTACCTG
CTGAACTCGGACGGAAGGACTTGTGAGGTAATAAACGTGACGACACCAGC
ACCTGCTGCATGTGCCAGTATCACCTGCCTGCCTGTCGGCATCGCGTCCT
GTTCCATGATGTCCGGGCAGCCTACGTGCAGCTGCAGTGCTGGTTACGCG
CTGGATGGCTCCAACGGGCAGCTTTGCGTCGATGTTGACGAATGCTCTAC
AAGCTGTCAAGGTAACAACACCATCTGCACCAACTCGCCGGGATCGTACA
GCTGCGAGTGCAAGGCAGGGTACTACAGTCAGGCTACCCAGGGGAACACT
GTTACTTGCTTAGTTTCAAGGACATTTGAAGCGAATATCAAGATCGCAAA
CCTGGCGTACACGTCCGATCTGGGGGATGCGGACTCTCAGGCTTTCAAAG
ATCTAGCGTCTTCAGTTGAGCAGAACTTGGACACCCTGTACAGCACTCAG
CTGGGTGCGGACTTCCAGGGCACAACTGTTACTGGATTCACAAACGGGAG
CGTGGTAGCAGACTACGTCATCAACCTGGCTTCTACTAGCACACAGACGT
CATCAAACCTGGCTGCCTCCCTTTCATCTGCGATTGCATCTTCAAATGGC
TCCCTTGCCTTTGATGCCAGCAGTATCACTGTGTCCGATATCAACGAGTG
TAATCTAAACACCACCAGCTGTGCAGATGTCGCCACCTGCAACAACACGG
AGGGGTCGTACTTCTGCACCTGTCCAGCTGGATGGACGGACGTATCTCCA
ACGGGTAGCATCTCCGGCTCAGCTTGCCAACGAGACACACCTGTCGTCAT
CACTACAAGTCCTCCACTTGGCATCATCCTAGGTTCAGTGTTTGGAGGCA
TCGCTTTCATAATCATTGTCGTACTCATCATCTGGATACTTTCAAATAAG
AAATCATCTGTTGGCGTGGTGGAGGTAACACATGCTGCAGCGCCTGATGA
CGTGGAAGCGCAGGACCATGGGCCATCAGGCCACCCTCCATCCCGGCAAT
TCTTGGTGGAAACTGCGCCACCAGCCCAACCCACCTCAGTCGCACTACCT
GGAACACCTGAGAGTAGTGAGGCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000241 | genome | Sc0000241:4958..11562 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96884_cuf0 |
| Biotype | protein_coding |
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