transcript:BL96892_cuf23 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96892_cuf23
Unique Nametranscript:BL96892_cuf23
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96892_cuf23

>transcript:BL96892_cuf23-protein ID=transcript:BL96892_cuf23-protein|Name=transcript:BL96892_cuf23|organism=Branchiostoma lanceolatum|type=polypeptide|length=518bp
ERLLDFCLTKFCTKMSVLYSLAARLFAYCDVQTALVLVSVLLLTFWYLRL
KKNLPPGPWGWPVLGHIPALGKNPHLGLTAMRKRYGDVIHIRMGPKDVVA
LCGYEAIHEALVKKGEDFSSRPYLYIFDKMGSFENGLGFLPYGSFWKQQR
KFTLRSLRDFGFGKRSLEGKILEEAEGLKEEILQTANAPFNARPLLQNAV
SNVICSIVFGSRFEYSDPKFQYLMERINQNFGEQELAGPANFFPWLRHIP
AVKKAVDKVVKNAKDVIGTLREFLIEHKNTFDPSNIRDFIDSYLLEMDQE
DEAGNRESFTEDQLNYVISDLFVAGSETTSTTLSWALLYMVLYPEVQQKV
QQEIDSVVGRDTVLSIIHRSQLPYTEAVITEIMRIKPVAPLGLPRATSND
TNLFGYDIPEGTMVWPVLWSVLYDPVHYPEPDVFKPHRFLNENGQFVKDP
TFIPFSTGRRICLGENLAKMELFLFFAHLLQHFTFKLPEGAAKPTTVGIM
GILTYSPVSYELCAIPRE
Run BLAST on NCBI

mRNA from alignment at Sc0000048:1660933..1665790+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96892_cuf23 ID=transcript:BL96892_cuf23|Name=transcript:BL96892_cuf23|organism=Branchiostoma lanceolatum|type=mRNA|length=4858bp|location=Sequence derived from alignment at Sc0000048:1660933..1665790+ (Branchiostoma lanceolatum)
AGAGAGACTCCTAGACTTCTGGTAAACAACTTTTTTTCTTATAGCGCATC
TGTTTCCTATGGCACAGAATACAGTTTTTTTAAGATTTAATGTTATTTTC
CATAATGTAACATTAATGTTTCATCTAAGACTGGACACAGAAAGCGTGCG
TGCATATGTTGTATAACTTTATATCAAGAAACATTAACTGTTTGGGAACT
GATCATGAATTCCGTCATTTTACAGCAAAGCGTGAACGTAGATTATAACT
TTTACATACCTATGGTTATAGAAGAAAACAGTATACCAGATGCAGTCCTA
AATTTAGAAACTAATCTTTCAAGTTCAGCTTGACAAAGTTCTGCACCAAG
ATGTCCGTGCTGTACAGCCTTGCTGCCAGGCTGTTTGCCTACTGTGATGT
GCAGACAGCCCTTGTCCTTGTCTCTGTCCTTCTGCTGACCTTCTGGTACC
TCAGGCTGAAAAAGAACCTCCCCCCAGGGCCCTGGGGGTGGCCAGTCTTG
GGACACATCCCAGCACTTGGCAAGGTCAGTGATAAGTGAGCCATTGGGTG
ACCTTGTCAACCATTTTGGTTCAATAATGAATATTATTAGCATTACCAAC
AGTGCAAATAATGGGTTGCCCAGACATCAGCATTCAACCGCTTAAGGTCA
AGGACAGAAAAAAGCTTATGCTAATGAGGCTGGCTGACCTTGGTCTAGGC
TGTATGCACAATACAGGACTGACATGAATAGAAAACGAGTGATTCTAGAG
CGAAAAAATGTTAGTAGCTGTAGTCATTGTACAACTTTTAAGCTACATGT
CCAAATTCATTTTGCTGCTATCATCACAATATCAATGTCAGTTCTTAAGT
TTTTCTACAATTTGTCTGGACGTTAAGAAGATCCAACAGTGAACATCCAC
TTTCACTTTCTAATGGCTAATCCATCTGTTTCCTATCAGAATCCACACCT
TGGGCTGACTGCCATGAGGAAGAGGTATGGAGATGTGATCCACATCAGGA
TGGGACCAAAGGATGTTGTCGCGCTCTGTGGCTATGAGGCCATTCATGAA
GCTTTGGTCAAGAAAGGGGAAGACTTCTCAAGCCGACCATACCTGTATAT
CTTTGATAAGATGGGTTCATTTGAAAATGGTGAGCTTTTATCAAACAAGT
TTTGATTTGGCGATGCACCTTAAATGAGCTCAAATAGATACATGTAGCTT
TTCATGGTGATGATAATTTCATAATTGTATAGATTCCAGAAGCATACATT
CAATCGTAGGTAGATTGATACTATTTTACAGTATCATTGGAGACATGGTA
AGTTTGAATTTGATGTTAACATATCTTTTCCATCATTTTACCTATTGCGG
GTAGGAGACTGGTAGGAGGGCTGTTGGGTCCGTTCAGTGGAAGAGCTTTG
TTATTTATAAGGGATTATCTTGGCCTGTTTCCACATACATGTAGTAGGAA
ATACTCCTTGTCTAAGCGAAGAATTAAAAATATGGCACAAGGGTTGTGCT
ATATAGTCAGCTGAGATTGTCAGTAAAGTGTTGTCAATATTGTCAAGTCC
GGTGGATTCACTAACTGGGAGTGAGCAGAGTAATTTGTGGACATGTACTC
ACTGTTACATCTTGAAATGAAAAGGTACAGTTCTTAGATGCCATGATGTT
ATCCACGATCGGTGCTGTAATACATATATCTATGTCGCCTATATCAATGT
ACAGACAATTGTCCAAGGCTTGTGTAGATAAAACATTCTACATGAATGTT
AGCCAAAATTCACTAAATATCCTAAGAGAGAATAATTAAAATGGACATCA
TGTCATAACGCATAAACATAGCCTGGAATCCAAACCTGTTATAGCTCCAG
AGTCGGAGAGGAGACTCGGGAGCTATGATAGGTTTGGATTCCAGGCTAGC
ACAAACATACATGTGATGGCCTGTGTTTTAACCAATTTTTTTTCAAATTG
CTTTAAAACGATCTTTTCCCATATTCTATAGGGCTGGGTTTCCTTCCCTA
CGGCTCATTCTGGAAGCAGCAACGCAAGTTCACTCTGAGGAGCCTGCGTG
ATTTTGGGTTTGGGAAACGCAGCTTGGAAGGCAAGATCTTAGAGGAGGCT
GAAGGTCTGAAGGAAGAAATTCTACAGACAGCAAACGCACCCTTCAATGC
CAGGCCCCTTCTTCAAAATGCTGTCAGCAATGTCATCTGCTCCATTGTCT
TTGGTTCACGGTTTGAGTACAGTGACCCAAAATTTCAATACTTGATGGAA
AGGATCAATCAGAACTTTGGTGAACAGGAATTGGCTGGACCGGCCAACTT
CTTCCCCTGGTTACGACACATCCCGGCAGTCAAGAAGGCTGTAGACAAGG
TAGTAAAGAATGCAAAGGATGTAATAGGTACTCTCAGAGAATTTTTGATA
GAACACAAGAACACATTTGACCCCTCTAACATTCGTGACTTCATCGACAG
CTATCTGCTTGAGATGGATCAAGAGGACGAAGCAGGGAACAGGGAGAGCT
TCACTGAGGATCAGCTGAATTATGTGATTTCAGACCTGTTTGTCGCTGGG
TCCGAGACCACATCCACCACTCTGTCATGGGCACTGCTGTACATGGTGCT
GTACCCTGAGGTACAGCAGAAGGTACAGCAGGAGATTGACAGCGTGGTTG
GACGTGACACCGTCCTGTCAATCATTCACCGCAGTCAGCTGCCCTACACA
GAGGCTGTCATCACTGAGATCATGCGCATAAAGCCTGTTGCACCATTAGG
ACTCCCTCGAGCTACATCCAACGATACCAACCTCTTTGGTTACGACATCC
CAGAAGGCACCATGGTTTGGCCTGTACTGTGGTCAGTTCTCTACGACCCT
GTACACTACCCTGAGCCTGACGTCTTCAAGCCTCACAGGTTTCTGAATGA
AAACGGGCAGTTTGTCAAGGATCCAACATTCATTCCTTTCTCCACAGGTA
AGACTGACTTCTGCAGGGCCATCTTAGACATCAGTATTTGGATGCCAAAA
ATTGCTCTTAAGTCATCTGCTTAATGGGAGCCTTGTGTCAAGTGTATTTG
GGTAGTTTGTTTTGTTTGTTTGTTTGTTTGTTTGTGCCTTAATTTATGTT
TTCATCATTCCCTTATTTTGGCCTGCAGGTCGTCGCATTTGCCTGGGGGA
GAATTTGGCCAAGATGGAGCTGTTCCTGTTCTTTGCCCACCTGCTGCAGC
ACTTCACTTTCAAACTGCCAGAAGGAGCCGCTAAGCCAACAACAGTGGGA
ATAATGGGAATTCTCACCTACAGCCCGGTGTCTTATGAGCTGTGTGCCAT
TCCGAGAGAATAATTACAATAACCTCAGCAACCTAAACCAAGTGAATCAC
CTTGCTTTCCTAATCTGTAACACTGCACTGCTTGATTATCTATAACGTTA
TATGGCCAGTTCACCTGTATGTGAAGCCATCTTACACCAAAAGATATAAA
GAGACTAATAATAACATAACCTATAACATAAACTATTATAGAATATTCTA
TGGGTAAAAACATGATGACATTGTAATACTCTGTATGTTTGGAAAACCTT
CCTGTTGATAGTCACTACTTCTAAACCAGTGTAAATAACTAGCTACCATT
GACAAAAATTTATTTACATCATTGGCATCAAAACAGTATTTCAAAATTAA
AGGCTTATTGTGAACTGATACTGAATACTAGCCTCCTTTGCAGACTCCTT
CCGGCTGTTTTCTTTTTCAAGTTACAGTTTTACCATTACATTTTCTTTTC
TTGTTGCTGGCCGGGAAGGAACAAGAAAAAAAATGTAATAGTAAAACTGC
ATGTGTAACTTGAAAAAGAAAACAGCTGGAGGGAGTCTGCAACGGAGGCT
AACTAAATACATGCATAGCAACCTGTTCAACTGATAAGTAAATTGTTCAG
GACAAGAGTACAAGGATGCCAGAGAATAACACAGAAAGACATGCTACTGA
GTGTGATCAAGTTTATTGTGAAGTAAAGTATTAAAGCTAGACTGAGTGTT
AGGTTTTAGTCCACAATGTAATCATATATTTGAATAACCACCATGTTGTT
AGGCATTGTAAAGTCTGTCTTATTTTAAGTCACTTTTTTGTGAGGAATTT
AGTGTATGATTTTGATGTCGTAGCACAAGTTTGTTTTGTAGGATTTTGGA
TTAGGGTTTTGGTTTTGTTGAGGGTATTTTTGTACTTTCATTTATCATTT
TTTTGAATGATGGCTATGTTACATTTTCTTTCAAATCAAATTAACTTCTT
TAAAAGATTTACAAATGTATGAAAATCAAAAGTCAGTCTTTTTGAAAACA
TTTTCTTGCAGCCCTGGAAACTCTTTTTAGAGAATCAAACAGAAAAAGAA
TGGCTTTCATCTTATACAAAGATGAAAAATAACAGAAAGTAAAACTGCCT
ACAATGCCCAAGCACATGAATTAGTTTCTGTCTTCTGTGTCTGTACTGTA
GTAGTACATGACATCATATAGTCCTATTGCACATATTAGTGTCATAAAAA
TATTTGTATCTTTTCCTAATATTTGTTTTCTACAGTTATAGGTGCATTTC
GTGATAATCATTCATTTAACTATATCTTAATACATGTTTATCACAGTCTA
TACTGTAGTCTCTTTTTTATAATTTGCAATTTTATGATTAATCATAGTAC
AGGTAAGGTGCACTTCAGATCTTTGTCTTCAAAATATATTATAAGTATAC
AAAGAACGCAACAAAGAAAGGCAAGAACAGCAAACAACCATTAAATCCAG
AGCAAGGTCAAACATAGCAAGTGAAAACACAACGTCATAAAATAGATTCT
TTCAGCAAGCAATAAAATACAAGCAGGTTCTGTACCCACCAAGCTAAAAA
CTTCTCCC

Coding sequence (CDS) from alignment at Sc0000048:1660933..1665790+

>transcript:BL96892_cuf23 ID=transcript:BL96892_cuf23|Name=transcript:BL96892_cuf23|organism=Branchiostoma lanceolatum|type=CDS|length=1557bp|location=Sequence derived from alignment at Sc0000048:1660933..1665790+ (Branchiostoma lanceolatum)
GAGAGACTCCTAGACTTCTGCTTGACAAAGTTCTGCACCAAGATGTCCGT
GCTGTACAGCCTTGCTGCCAGGCTGTTTGCCTACTGTGATGTGCAGACAG
CCCTTGTCCTTGTCTCTGTCCTTCTGCTGACCTTCTGGTACCTCAGGCTG
AAAAAGAACCTCCCCCCAGGGCCCTGGGGGTGGCCAGTCTTGGGACACAT
CCCAGCACTTGGCAAGAATCCACACCTTGGGCTGACTGCCATGAGGAAGA
GGTATGGAGATGTGATCCACATCAGGATGGGACCAAAGGATGTTGTCGCG
CTCTGTGGCTATGAGGCCATTCATGAAGCTTTGGTCAAGAAAGGGGAAGA
CTTCTCAAGCCGACCATACCTGTATATCTTTGATAAGATGGGTTCATTTG
AAAATGGGCTGGGTTTCCTTCCCTACGGCTCATTCTGGAAGCAGCAACGC
AAGTTCACTCTGAGGAGCCTGCGTGATTTTGGGTTTGGGAAACGCAGCTT
GGAAGGCAAGATCTTAGAGGAGGCTGAAGGTCTGAAGGAAGAAATTCTAC
AGACAGCAAACGCACCCTTCAATGCCAGGCCCCTTCTTCAAAATGCTGTC
AGCAATGTCATCTGCTCCATTGTCTTTGGTTCACGGTTTGAGTACAGTGA
CCCAAAATTTCAATACTTGATGGAAAGGATCAATCAGAACTTTGGTGAAC
AGGAATTGGCTGGACCGGCCAACTTCTTCCCCTGGTTACGACACATCCCG
GCAGTCAAGAAGGCTGTAGACAAGGTAGTAAAGAATGCAAAGGATGTAAT
AGGTACTCTCAGAGAATTTTTGATAGAACACAAGAACACATTTGACCCCT
CTAACATTCGTGACTTCATCGACAGCTATCTGCTTGAGATGGATCAAGAG
GACGAAGCAGGGAACAGGGAGAGCTTCACTGAGGATCAGCTGAATTATGT
GATTTCAGACCTGTTTGTCGCTGGGTCCGAGACCACATCCACCACTCTGT
CATGGGCACTGCTGTACATGGTGCTGTACCCTGAGGTACAGCAGAAGGTA
CAGCAGGAGATTGACAGCGTGGTTGGACGTGACACCGTCCTGTCAATCAT
TCACCGCAGTCAGCTGCCCTACACAGAGGCTGTCATCACTGAGATCATGC
GCATAAAGCCTGTTGCACCATTAGGACTCCCTCGAGCTACATCCAACGAT
ACCAACCTCTTTGGTTACGACATCCCAGAAGGCACCATGGTTTGGCCTGT
ACTGTGGTCAGTTCTCTACGACCCTGTACACTACCCTGAGCCTGACGTCT
TCAAGCCTCACAGGTTTCTGAATGAAAACGGGCAGTTTGTCAAGGATCCA
ACATTCATTCCTTTCTCCACAGGTCGTCGCATTTGCCTGGGGGAGAATTT
GGCCAAGATGGAGCTGTTCCTGTTCTTTGCCCACCTGCTGCAGCACTTCA
CTTTCAAACTGCCAGAAGGAGCCGCTAAGCCAACAACAGTGGGAATAATG
GGAATTCTCACCTACAGCCCGGTGTCTTATGAGCTGTGTGCCATTCCGAG
AGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96892gene:BL96892Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96892_cuf23transcript:BL96892_cuf23-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96892_cuf23-E1BL96892_cuf23-E1-1564476830-222183Branchiostoma lanceolatumexon
BL96892_cuf23-E2BL96892_cuf23-E2-1564476830-222185Branchiostoma lanceolatumexon
BL96892_cuf23-E3BL96892_cuf23-E3-1564476830-222187Branchiostoma lanceolatumexon
BL96892_cuf23-E4BL96892_cuf23-E4-1564476830-222189Branchiostoma lanceolatumexon
BL96892_cuf23-E5BL96892_cuf23-E5-1564476830-222192Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000048genomeSc0000048:1660933..1665790 +
Properties
Property NameValue
Transcript idBL96892_cuf23
Biotypeprotein_coding