transcript:BL96894_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96894_cuf7
Unique Nametranscript:BL96894_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96894_cuf7

>transcript:BL96894_cuf7-protein ID=transcript:BL96894_cuf7-protein|Name=transcript:BL96894_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=104bp
ESGAGKTENTKKVISYFALVAAMGGPKKEGAEEEKKITLEDQIVQTNPVL
ESFGNAKTVRNNNSSRFGKFIRIHFNRKGKLAGADIESYLLEKVRVIEQL
PGME
Run BLAST on NCBI

mRNA from alignment at Sc0000711:54313..55088+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96894_cuf7 ID=transcript:BL96894_cuf7|Name=transcript:BL96894_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=776bp|location=Sequence derived from alignment at Sc0000711:54313..55088+ (Branchiostoma lanceolatum)
GCGAATCCGGTGCCGGTAAGACTGAGAACACGAAGAAGGTTATCTCCTAC
TTCGCCCTGGTAGCTGCCATGGGCGGTCCCAAGAAGGAAGGGGCTGAAGA
AGAGAAGAAGATCACCCTTGAGGACCAGATCGTGCAGACCAACCCCGTAC
TGGAGTCTTTTGGTAACGCCAAGACCGTCAGGAACAACAACTCCTCCCGA
TTTGTAAGTGGTCCATTTTTTTTTCTTGGAACAGTTACATAAAATCATGA
GCTTTATTTGAACATTTTAAAGTCGTACTTCCATCTTCAATTTATCTATT
TTCCCGTCAATGTTTAACCAATTCTAGCCCTGGAAAGCAAAGAATGAAGT
TTGCCATCAATGTGACAATGGTTGTATCCTGTTCCTCTCTCCATACAGGG
TAAATTCATCAGGATCCATTTCAATCGAAAGGGAAAGTTGGCCGGTGCAG
ACATTGAGTCATGTAAGCACTTGTGTCCCCTTAAAAATGTTCAAACTTGC
AAACTATATACTTCAAACAAACCACAATCATACTTCTATTGTATGACCTT
CCTTTTTTCTTGACTTGAAAATCATATGACAGTTACACAGTACAGTATGT
AGTCTTTAATTGTAATTATAACAATTCGTGTTTTGTAAAGACAATACCAT
CATAACAAGGTCCCGGACAGTGATCACAATTGTATTGGATGTTGTGTTAA
GTTCCGTACTCTTTTTGCTTTATCCAGATCTGCTGGAGAAGGTGCGTGTG
ATTGAGCAGCTGCCTGGTATGGAGCG

Coding sequence (CDS) from alignment at Sc0000711:54313..55088+

>transcript:BL96894_cuf7 ID=transcript:BL96894_cuf7|Name=transcript:BL96894_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at Sc0000711:54313..55088+ (Branchiostoma lanceolatum)
GAATCCGGTGCCGGTAAGACTGAGAACACGAAGAAGGTTATCTCCTACTT
CGCCCTGGTAGCTGCCATGGGCGGTCCCAAGAAGGAAGGGGCTGAAGAAG
AGAAGAAGATCACCCTTGAGGACCAGATCGTGCAGACCAACCCCGTACTG
GAGTCTTTTGGTAACGCCAAGACCGTCAGGAACAACAACTCCTCCCGATT
TGGTAAATTCATCAGGATCCATTTCAATCGAAAGGGAAAGTTGGCCGGTG
CAGACATTGAGTCATATCTGCTGGAGAAGGTGCGTGTGATTGAGCAGCTG
CCTGGTATGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96894gene:BL96894Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96894_cuf7transcript:BL96894_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96894_cuf7-E1BL96894_cuf7-E1-1564476830-494948Branchiostoma lanceolatumexon
BL96894_cuf7-E2BL96894_cuf7-E2-1564476830-494950Branchiostoma lanceolatumexon
BL96894_cuf7-E3BL96894_cuf7-E3-1564476830-494953Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000711genomeSc0000711:54313..55088 +
Properties
Property NameValue
Transcript idBL96894_cuf7
Biotypeprotein_coding