|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96906_cuf0 >transcript:BL96906_cuf0-protein ID=transcript:BL96906_cuf0-protein|Name=transcript:BL96906_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=334bp
SSSDGDTSSVSTWLSPDGQVSHIMARELRVQCPVDLRRFPVDTQECLVEL
HAYGGTVFELSVTEESPSPLSIDLTNVLSQYKVTGTLIKASVNSMRGQEL
PCEYFSQRCSTLRDAELCAAMRYCDPRGGQCQECAEYIGDCRTIPTNCSA
PSDSSPRSYSTLEVGIHLQRRLPYFIFRFYIPTTIAVVVSWMAFWIHHTE
LSPRVFMGTVTYLVMVKQRASMTPMPYVSYTRAIDVWYLGCLVFVVLAML
EFPVIHVTERAKGKKIKEKDSRDQPVVKIPRVRQIGAAEAPPPPVPGNTC
LYKQPALLDSFARVAFPTAFTIFFVTYWMILLFT Run BLAST on NCBI mRNA from alignment at Sc0000023:656071..660921- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96906_cuf0 ID=transcript:BL96906_cuf0|Name=transcript:BL96906_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4851bp|location=Sequence derived from alignment at Sc0000023:656071..660921- (Branchiostoma lanceolatum)
CAGTTCATCAGACGGTGACACCAGCTCCGTGTCGACGTGGCTATCTCCTG
ACGGTCAGGTCAGCCACATCATGGCGTGAGTAGAGCGCTTTACGTACTTG
TATAATTTGTATCATGGACTCCAGGAAGAACAGTGATGTATCACTAATGG
AGATCGTAATAAACCAAACCAAACCAAACTTAACTTAACTTAACTCGTGT
CGATTGCTAGTCCACTTCCTCCACTCGAACCATTCTGTCAGCCCAGAATC
GTCTGTCCTCCAGTGCCTTCTCTAATGCCTCAGAGGGTAGGCCGGTATCT
TTCTGTAGCACGTCTATGTAGATGAGGGGCTGCCTTCCTGGTTCTCTCTT
TCCACCAAGTTTTGTGGTTCCCAGATGTCATACATATGATCAAACCAGCA
TGGCCTAATGTATTATCGTGGCAAGTTCGGGGTGTCATACTCATCCATGA
ACATTCCAGGTCCTAACAGCTAAACCCACACTGCCCGATATCACTTTACT
CATTGTGGCATCCGTTTAGTGTTTAGTTAATTGTTGGTATATGGTGCTTG
ACTGCTAACATGTCTTCTGCCCCCTCCCCAGTCGTGAACTGCGTGTTCAG
TGTCCTGTGGATCTCCGCCGTTTCCCTGTCGACACCCAGGAATGCCTGGT
TGAACTACATGCATGTAAGTTTGTTTGTGCGTCTAATCATTCATGGCAAC
TTTTCATTGAGGTAAGGATAATGGTCGATGAAGAGACAATGGTCGAACAC
ATCGTATGATCGTACATAATGGCATAAGGTTACATGCAAGGTTCAAACAC
ATTATACATATTCACAACTTGCACAAGGGTTAAACTCACTATACACTTAG
ACAAACAAGGGTCAATCCCACTGTACGCATATACAATGGTAAAACACTTG
ATTCATCCATACATAGAAGGGTCACAAAGGGTAAAACACAATAGATATGG
ATATATATACAAGGCTCAAACAGATCATTAAGTCACAAACAAACACGTTA
TACATACATACAATGGCCATACACATTACATATACAAACATATAAGTGTC
AGATAGATATATCATATATCATACAATCATACATCGGTCAATCTCGGTAT
ACAGACAAAATAGCAATACTGTGATAGTGACAATGATGATGATAATGATA
ATGATGATAATAATAGCAATGATAATGATAAGTGAATACCTGGCTTTCAG
ATGGAGGGACAGTGTTTGAACTGTCCGTGACAGAGGAGTCACCGTCGCCG
CTGTCTATTGACCTCACCAATGTCCTGTCGCAGTACAAAGTCACCGGAAC
ACTGATTAAAGCCAGTGTGAACTCCATGCGGGGACAAGGTAAGCTTTTAG
GGTTTTCTACTCGATGACGATGACGAGTTTATTTGTTTCTTTGTTGTTAT
CCAGAATGGTTACACGGCTTATGTGTGGCTTTAAATGCGATGATAGGTAG
ATATGTTGGTGACAGAATGAAAGTTGATGGTGAGGTGCTGATTCAGTGCT
CACAAAATAAGGTGTTTCTTACCCAATCGAATTGAGGGAAGATTGTAATT
ATAGGAAGTCTGCATACTTGCGGCAATTGATACACTGGCTAATTAGATCA
AAAATATAGTAATGAGCCACCATTGAGAGTGTGTTTTTTTCCAAAAGAAT
TGCCTTGCGAGTACTTTTCCCAAAGATGTTCGACACTACGCGACGCTGAG
CTGTGTGCAGCCATGCGGTACTGTGACCCAAGAGGCGGGCAATGTCAGGA
ATGTGCAGAGTACATCGGTGACTGTCGGACGATCCCGACGAACTGCTCTG
CTCCATCAGGTAACTTGCCTCGTTTTCGTAGTCTCTACCAGGCTGACTAC
GCTGGCTACTATAGGGACAATAATTTGCCAGGGGTTTGACTACCAAAGGG
TTTGAATGACAGCGCAGCATATGTTAACCTTATCGTGAACTGACTTTTAT
GGCCAATATTTTTCTTTTTTTGCTGAATTCTACGATCCATTCCCCCGTAG
GAAGGCCTGGGGGAGGCTATCGTTTTCTCCTCCTGCCCGATAGTTCATGG
CGCCTAACATCTTTTTGAATGTGCAGAAAAATTAATCTGGGTTAGTAAAA
TACAAAATGAAAGACTACATACTTACCGGAATTTTCCAATGATTCGCCCT
GCCTTCCTCTGCCTTCTGACCCAATCGCTCAGGACACTTGCTTTTTTCAT
TCACGTGTGGCAGCAATAGATCAAAGGTTGTTGGACGTCGAGGGCGCGCC
CACCATCTCTCGACCGGGACGGGGGGCGATATTGACTTCCAACCACCTTT
GACCGACTGCTTACGTCACAAAGACTCACACGTGAATAAAACGCACGTTT
TCAAAGTGATTGGGTCATAAAGCTTAGGAAGACTCGATTCAGTCGAAAAT
TCCAATTGGGACATTCTTTTAGTTGGAGAACAGTTTAATTCTTCGTGGTA
ATCTTTTTGAATGCAACATAATGTTGATGCTAATTCATCGTTCTCCTTCT
AGATAGCTCGCCAAGGTCGTATTCCACATTAGAAGTAGGGATTCACCTTC
AGCGACGCCTGCCGTACTTCATCTTCCGTTTCTACATCCCGACGACCATC
GCGGTTGTGGTGTCCTGGATGGCCTTCTGGATCCACCATACCGAGTTGTC
CCCCCGAGTCTTCATGGGCACTGTCACATACCTGGTCATGGTGAAGCAAC
GTGCGTCCATGACACCGATGCCCTATGTGAGTGTAAAGCCCCCCTCTCAC
TGGACCCGCGGCACGCTGGCGGCGTCGCTGCGTCCTAAACTGGATTTGTG
TTACCCTTGACTTTATATTGGGAATATCATTGAAAACGTATGACCAAAAA
GACGACAAAACACACAAAGCTTGAAAAGATTCGTTTTTTGTCGATGAAAT
TCGTTGAGTGCTTTGTCAATTCGATCGGCCGCAGTGACGCCGCCATCGTG
CCGCGGGTCCAGTGAGAGGGGGCCTTTTACTTCGCGGTGATTTAATTTCG
CAGTATGGGTGAAATGGAGTGTTCGCGGTTAAACAACAATTGATCTTATT
GCCTACAGTTCACATCGCCCCTAAAATTATTTTGTATCTGCTCCAACACT
ACAGGTTTCCTACACCAGAGCCATTGACGTGTGGTATCTCGGCTGCCTGG
TGTTCGTCGTGCTGGCCATGCTGGAGTTTCCCGTCATACATGTTACGGAA
CGAGCTAAGGGAAAGGTATGCATACATCTTATTTCATTTTATTGAACATG
TGAAAGTGCAACACAGCGATACACAGGTCACCCAGGCAGCGTTGCGGCTG
TCGGACGCCATCTAAGGGCCCTGTCACACTTGTGCGTATAAACGTTGCGT
GTGAGTTTCGTATGGACAAAATGCAATACGCAGCCGTACGCACAACAGTT
GTGGAATTTTCCAATTATTTTGACGAATGTGTGACTCACATTTCGTTATT
TACATGTTAGATGTGCCTCACACATTTATCAAAATAATCGAAAACTATTT
ATAACGAATAACTTGCGTATTAGCGTAATTTCGTTAATACCCCAAGCTAT
CATACCTACTGGGCCATATTATGCGTATGCCGGCGTACATAAAACTTACG
CAAATCGATCGAGATGCGTGTGATATGCGTATTGTGCGCACGGCGGCGTA
TGGATAAAATGCCAATGCGCAACTCACACGCAATGGCTATACGCACAAGT
GTGACAGGGGCTTAACATACAGTATAGTAAAACATCCACATATAAGACAA
CGCCATACATCAAAAACATTCATAATATGACAGAAAGATAAATCCATTGA
TGGTATCCATGATATTATGTGATATTGAATGACAGCATTCTTTGTACACA
ACAACTATTTTTTTTATTCACACTGAACTTTCGATGACCATCTGTTACTT
TCCTCATGGCAATTATGACTGGTTATCCTTGCACTGCAGCTATAGGTGTC
GCTGCTTATAGATACGGTTCCAAACGTAAAGTATCATAATCATTATGACG
TAAATGAAAAGCCTGTATTGGAGGTTCAAATCAGTATCCTGTGATCTAAC
TCGAAATCTTTGTTCCTCAGAAAATCAAGGAAAAGGACAGTCGGGACCAG
CCTGTAGTGAAGATCCCCCGTGTGCGGCAGATAGGCGCAGCCGAGGCCCC
GCCGCCACCTGTCCCGGGCAATACCTGCCTCTACAAGCAGCCAGCCTTGC
TCGATTCATTCGCCCGGGTCGCGTTTCCAACGGCCTTTACCATCTTCTTT
GTGACTTACTGGATGATCTTATTGTTTACATAAAAAAATATTTAGTAGAT
AGCGTTGAAGAGGTTCATCAGTCACGTATGATAACAAGAATATTCTTCGA
ACAGTGACTTAATATAAGGTAGCGAAATACTAACCTCCAAATTTTCGACG
TCTAGTCTGTACGTCTTGTTCACGGAGTGACCTAGTCTCGCGAGAACACG
AGACTAGGCAGAGACTTGTGAAGATCGTCCTGCCTCCCCGCCTCCTTGCG
GAGTAGGGGTAAGTAGGACTTGGGCAGCTCCCAACCTCCCAACCTTAGTG
GATAGCAAAGTTAATCGTGAACAGCCAAGTGTTTTAGTCAAGACCGACGT
TTCGGTGACCGTCTGTCAGCTTCCTAGGGGCAAGTCTGACTGGTTCTGTT
GCGTACTGCAGCTAGGTGTCGCTGCTAACAGATGCGGTCACAAACGTAAA
GTACTAGTATTTACCAATGCAATGTTTATATAACCAGTAATAATTTCCCT
GAGGAGGAAGGTGACAGACGGTCACCGAAACGTCGAACTTGAATAAAACA
TTTGGTTGTGCACAAAGAATTTGGTAAATCCAGTGACTTAGTAATACCAA
C Coding sequence (CDS) from alignment at Sc0000023:656071..660921- >transcript:BL96906_cuf0 ID=transcript:BL96906_cuf0|Name=transcript:BL96906_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1005bp|location=Sequence derived from alignment at Sc0000023:656071..660921- (Branchiostoma lanceolatum)
AGTTCATCAGACGGTGACACCAGCTCCGTGTCGACGTGGCTATCTCCTGA
CGGTCAGGTCAGCCACATCATGGCTCGTGAACTGCGTGTTCAGTGTCCTG
TGGATCTCCGCCGTTTCCCTGTCGACACCCAGGAATGCCTGGTTGAACTA
CATGCATATGGAGGGACAGTGTTTGAACTGTCCGTGACAGAGGAGTCACC
GTCGCCGCTGTCTATTGACCTCACCAATGTCCTGTCGCAGTACAAAGTCA
CCGGAACACTGATTAAAGCCAGTGTGAACTCCATGCGGGGACAAGAATTG
CCTTGCGAGTACTTTTCCCAAAGATGTTCGACACTACGCGACGCTGAGCT
GTGTGCAGCCATGCGGTACTGTGACCCAAGAGGCGGGCAATGTCAGGAAT
GTGCAGAGTACATCGGTGACTGTCGGACGATCCCGACGAACTGCTCTGCT
CCATCAGATAGCTCGCCAAGGTCGTATTCCACATTAGAAGTAGGGATTCA
CCTTCAGCGACGCCTGCCGTACTTCATCTTCCGTTTCTACATCCCGACGA
CCATCGCGGTTGTGGTGTCCTGGATGGCCTTCTGGATCCACCATACCGAG
TTGTCCCCCCGAGTCTTCATGGGCACTGTCACATACCTGGTCATGGTGAA
GCAACGTGCGTCCATGACACCGATGCCCTATGTTTCCTACACCAGAGCCA
TTGACGTGTGGTATCTCGGCTGCCTGGTGTTCGTCGTGCTGGCCATGCTG
GAGTTTCCCGTCATACATGTTACGGAACGAGCTAAGGGAAAGAAAATCAA
GGAAAAGGACAGTCGGGACCAGCCTGTAGTGAAGATCCCCCGTGTGCGGC
AGATAGGCGCAGCCGAGGCCCCGCCGCCACCTGTCCCGGGCAATACCTGC
CTCTACAAGCAGCCAGCCTTGCTCGATTCATTCGCCCGGGTCGCGTTTCC
AACGGCCTTTACCATCTTCTTTGTGACTTACTGGATGATCTTATTGTTTA
CATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000023 | genome | Sc0000023:656071..660921 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96906_cuf0 |
| Biotype | protein_coding |
|
