transcript:BL96908_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96908_cuf0
Unique Nametranscript:BL96908_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96908_cuf0

>transcript:BL96908_cuf0-protein ID=transcript:BL96908_cuf0-protein|Name=transcript:BL96908_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=152bp
DTIAIINGNITATDGYCSGNDIQFSCYLGYELVGASSATCQKNGSLSREI
PTCKRICCDDTIKLTNGQVIGNGGYCSGNDVQFSCDPGYELVGNTYAICD
DKGWDREIPTCQLVCCDNITEITNGLVDASDGYCFRNDILFSCKPGYELV
GW
Run BLAST on NCBI

mRNA from alignment at Sc0000023:2395035..2396069+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96908_cuf0 ID=transcript:BL96908_cuf0|Name=transcript:BL96908_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1035bp|location=Sequence derived from alignment at Sc0000023:2395035..2396069+ (Branchiostoma lanceolatum)
CGACACCATAGCAATAATTAACGGCAATATCACTGCTACTGACGGCTACT
GCTCTGGGAACGACATTCAATTCTCTTGTTATCTCGGGTACGAGCTTGTC
GGTGCCTCCTCGGCCACCTGCCAGAAGAACGGGAGTTTGAGCCGAGAGAT
TCCTACTTGTAAAAGTGTGTAAATAGCCGCTATTTACGTTATGAAGGTCA
TGTTAACGTTATTGTCATGATTCTTATTGATGTTTTCTTAGATACCCTTC
AGTGTTAGATAGATTTATAGAACTCTAGGCCCTCCAGAATCGAATCTATT
GCTGAAACCGCATTCTTTTTGGTACATGTACCTAGTAACTTGAAGGAAAA
TAACCCAGCAAACTTTTACTTTCTTTCTACAATTTGTTCGTATATCGGCG
CTATCCTTATATTACAAACGTTTGGTTCGTTTCGTAAGCAGCATTATTTA
AAAATGTTCTGTTTCTGTTGATGTCATTCGATACCTTTGTTTCATTGTAA
AGAAAATGAAGAATCTCAACGTATTCGTTTAAAGGAATTTGCTGCGACGA
CACAATCAAACTAACGAACGGCCAGGTCATCGGTAACGGCGGTTACTGCT
CTGGGAACGACGTCCAGTTCTCTTGTGACCCCGGATACGAGCTTGTTGGC
AACACCTATGCTATCTGTGATGACAAAGGGTGGGACCGTGAGATCCCGAC
TTGCCAACGTGAGTTACCGAAAATGTTTATTATTTCTTTTCTTTACTGTG
TCGGTTATCTGAAAGAAATGGATATATCAACGACGGTACTGTAAATAGGC
TACAGGGTGGAGTGTATATATGTTCACCTCTATGTTCGACTTAATTGATA
AAAATAAAAGCATACTTTTAGAGCGCTAGCTTTCAATGTTGTTCATACCA
GCTTTATATGTCTCAGTTGTCTGCTGTGACAATATCACCGAAATCACGAA
CGGCCTGGTTGATGCTTCTGACGGCTACTGCTTTCGGAACGACATCCTGT
TCTCTTGTAAACCTGGGTACGAGCTTGTCGGTTGG

Coding sequence (CDS) from alignment at Sc0000023:2395035..2396069+

>transcript:BL96908_cuf0 ID=transcript:BL96908_cuf0|Name=transcript:BL96908_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=456bp|location=Sequence derived from alignment at Sc0000023:2395035..2396069+ (Branchiostoma lanceolatum)
GACACCATAGCAATAATTAACGGCAATATCACTGCTACTGACGGCTACTG
CTCTGGGAACGACATTCAATTCTCTTGTTATCTCGGGTACGAGCTTGTCG
GTGCCTCCTCGGCCACCTGCCAGAAGAACGGGAGTTTGAGCCGAGAGATT
CCTACTTGTAAAAGAATTTGCTGCGACGACACAATCAAACTAACGAACGG
CCAGGTCATCGGTAACGGCGGTTACTGCTCTGGGAACGACGTCCAGTTCT
CTTGTGACCCCGGATACGAGCTTGTTGGCAACACCTATGCTATCTGTGAT
GACAAAGGGTGGGACCGTGAGATCCCGACTTGCCAACTTGTCTGCTGTGA
CAATATCACCGAAATCACGAACGGCCTGGTTGATGCTTCTGACGGCTACT
GCTTTCGGAACGACATCCTGTTCTCTTGTAAACCTGGGTACGAGCTTGTC
GGTTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96908gene:BL96908Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96908_cuf0-E1BL96908_cuf0-E1-1564476830-156358Branchiostoma lanceolatumexon
BL96908_cuf0-E2BL96908_cuf0-E2-1564476830-156360Branchiostoma lanceolatumexon
BL96908_cuf0-E3BL96908_cuf0-E3-1564476830-156362Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96908_cuf0transcript:BL96908_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:2395035..2396069 +
Properties
Property NameValue
Transcript idBL96908_cuf0
Biotypeprotein_coding