transcript:BL96924_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96924_cuf1
Unique Nametranscript:BL96924_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96924_cuf1

>transcript:BL96924_cuf1-protein ID=transcript:BL96924_cuf1-protein|Name=transcript:BL96924_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=413bp
VDLSAAMCAKDKCQKFAKVFDKLTLTLPQCSGVRSLQPKGAKIIDLNELK
EKTLQEIKELFDIKNPGSFDIQELMKNLREAYLEIAKDALNNLLGKLFAG
QFDSFDVCMEGGKTFGSDITFFKITFNFFLGPVPMEFVFSAGGSWKVQCG
VKLCFLTMKAEGTATPQIGAMVSGALNINLFLFKAGLKLTGYLLTTKLPT
KAEVGFSKFPLDVGIRMDLELIPLRLELRAILKLTINLLFTSFEKTLINV
LLWEYTTPSITANIFNTFSKEPDDSPPSFNDFTTSSGNGVGKRASATSQC
SVNQIPNRDYTEPAFQLAIAVEDDLSKVEVSYCIATFAGGSDLARDEVLG
GPSSVVEQVLPTRVPLFFTVKAANSAGGTATVTCSLDFYDLTPPAGRVIP
DFFTTSHPNVLKA
Run BLAST on NCBI

mRNA from alignment at Sc0000014:2339513..2345015+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96924_cuf1 ID=transcript:BL96924_cuf1|Name=transcript:BL96924_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5503bp|location=Sequence derived from alignment at Sc0000014:2339513..2345015+ (Branchiostoma lanceolatum)
GTGGACTTGAGTGCTGCAATGTGTGCCAAGGATAAGTGCCAGAAATTTGC
CAAAGTATTCGACAAGTTGACCCTCACCCTTCCCCAGTGCTCTGGTGTGC
GCTCTTTGCAACCTAAGGGAGCAAAAATAATAGGTACTACAATCTTTAAA
ATGACTTTAGTGTAGAATGCATTTACCAATAATGGCTAAGAAGTTGTTAG
AATTTACCTACTATCAAAAACCAAAACATAACGTTGGGTAACATAAATTT
GGGATTTTTCCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATAAA
CCATCCTTTTTTTCTATTATTCTGTCAGTATCATGTACTATCTTTGCACT
AATCATATATATGGTAGATTTTGTCTCTAGTCGTGCTGACACCATAATAT
TTCAACTTGAAACTACCGTCCGCCGCACGCACAATGACGGTGCTGTCGGA
CAGGGGTGAACATTAATTCGGGAGAGAAGATTCGTCTTGAATATCTTACC
GCTAATTACATTTTATACAGCAGCTATTCGTTCCATCCTTGGCTTGAGGA
GAGTGCTATGGATATAGACGTGTCCAAGTAAAAAAAATACACGAAAAAAC
GGCCGTACCGCACACATCAGGCCTACGGGAACAACCCGTGTGTTGAGTCG
GTAGCTATAGAACGTCAAAGTCGACATCCACCGTCATGGCAACGTGTACA
TTATTCATGGAAAGTTAGCCGGATGCCGTAGCATTGATAATACTACTATG
TCCATGTATTCCTTGTTGTGTTAGGAGCAAACTTTGAGGAAAATATCGTC
CTCAGTCCACAATCACACGCAACATTTAGACAAAAAAGTGTTCCTCACAA
ACCTTTGTCGTCTGCTTGACAACAGGATTCTGGGTAATGATATGGCGGCG
GGAAAATACACGTGCCGTAGGTTGTAGCAACAAAGAGGGGTTTTGATGAT
TGATCACACTTAGAGTCCAATTGCAGGTCAGCAATTTTAAGAAAATAAGT
TGTCTTGTAAATGATTGTGTTTAGCAGGAAGCGGATGTGACATTTGTCTT
ATAAACCAGCCGACAACGATGTAGTGTGATTCTCCCACGAAGCCCTCAGA
CTGTTCCAATAAGGGACGGAGAGTTTTTGTCCTCGTCGCCTTCTAATGCA
TGCTTATCGAAGCTTTTCAGACAGTGTTCTGAATACGTTAGTCTGTCAAG
TTTGCATTTCTAGCGGTATTACTGATGTTGCATCTAGCACATATCCCTAA
ATACCCCGTTTTCGAAAAATCCTGAATTTAAGTACCCCACGAATTTAGGT
TACCCAACGTTACATGTGTCAAGAAATGTAACTTACTTTGTTTGAGATAT
GTCCCATATTCTATTTTGCAAGCTGCACAATGACAACACAATTATGTTCT
AGTTCCATATTGTTTACAAAGTATAATTTCTACTGTTTATGAAGGGAAAT
AATGTGATTATTGAATCCCTGTCCTTTCCAGACTTGAACGAACTGAAGGA
AAAGACACTTCAAGAAATCAAGGAACTCTTCGACATAAAAAATCCAGGCT
CGTTTGACATCCAAGAGCTCATGAAGAATCTCCGTGAAGCATATTTAGAG
ATCGTGAGTACTGTGTCAAGAATTTCAGCTAATGTTTGACATTTGAAAAA
CTCTACCAAGTTATTAGAGTTACAATGAAAGTAATTGTGATTGTCATAAT
TGTAAATCAGGATTTTTTTCTCACATGCATTGGTGAAATATATACGTCAA
GCCTTTAATTTCTCCTAATTTCTCCTTTTTTAAACAATAGTTATACTGTA
ACTGTATGGTATAACAGTTACCTAACTTCTCCAGATTGCCTAACTTCTCC
AGATGATCAGAGAAGGCAGTACTAGTCTTGATCTTCATATTCTCTAGTCA
AAGCAGTGAAACTACTAGTATTTGCTTCTTGACAATCCAATGACAGTCAA
ATAATAATAAATGATAAATCTGAAAAAAAATTGAGAGATTTTACTCTGAG
TAATGTGCAGACCAAGCCATTTGCACAATGTTACTTTAAGGTGCTTTGAA
AATTAGTCTACTCTGGAGCCAATGTTTCAAATTACAGTACCTTTATATGA
TTGTCATATTAAGTAGGATTTTTTTCTCATATGCATTGGTGAAATGTATA
AATCAAGCCTTTAATTTCTCCGTATTTCTATTTTTTTACAATATCATTAA
TTCTTACTATTACAGGCCAAGGATGCATTGAACAATCTCCTGGGAAAGCT
GTTTGCCGGACAATTCGACAGCTTCGATGTGTGCATGGAGGGAGGGAAAA
CATTTGGCAGTGACATAACGTTCTTTAAAATCACCTTTAATTTCTTCCTT
GGGCCAGTTCCAATGGAGTTTGGTAAACACTTTTTATGTATATACTTTAT
GTGTATCATCTCCTCAGATCGGTTTAAGTTGTTTTATACTAGTCTTCATG
TAACTATGTACAAATGTCCATATATACAAGACACTTAGTCATGTAATTAA
TCACCAAAGTGGCAAAACCCACCACCTCTTCAAGACTGCTGCTACAATAA
TTTATCATCTTTGCTATGTTGCCTTTTGTTGTTATTTGTTCAACGATCAA
AAAGTAACTAATAGGCAGCAATTTGTAGAAAAATCAGTTTTTATGCATTT
ACATGAATGTAGTTATTGGGTAGTATACAGTAACTGATATGCTGTTACAG
TAAAAGCTTTATTTTGCACCCTTACAACAAACATTGTATACATGGTTATG
TATATCTTCTTTCTTTCTTTCTTTATTGATAAAACCTAAAGTTTGTTTGG
AATTCTTCTTGCAGTGTTCTCTGCAGGGGGTAGCTGGAAGGTGCAGTGTG
GTGTCAAGCTTTGTTTCCTTACCATGAAGGCAGAGGTAAGATACCAACGT
GCCATAATGGCATCTTTTCATTTCTACATTGAAAGTTGATTAAAGGGTTA
ATAATTCAAAATACACCCTTAGATGGGCATGTCCCTGTGATGTAGTGGTC
TGCACTTCTGTCACTTCCACATCTCAGGTTCAAATTATGAGGAGCCAGAA
GGCCCTAGTTCTGCCCGGGTAGGACATGTCTAGATAAGAGGCGCACCAAG
TCATACCAAAGACTTAATAAAAATGGTACATACTTGTATGGAAGTAAAAC
ACACTCCACTGCCAGTGGACTAGACCCCTGCTGCAGTGATTGCACCACAG
TGTGGCCTAGGGCTATGAAACGGAGATGGGCACCTTATGGTCTCATGGTG
TGGGAGGACTTTAACTTAACACCCTTAGACAGATCTGTATGATTGCAGTT
TTTGCTACATGTGTAGCTTCTCTCACCATGTTTTTATAATTGGTTCGTCC
TTCATTCTTTTTGCTCTAAATGTAAACAATGTTATGATAAACTATGTAAT
ACTATGCTTAATCATCATATCTTCAATTTTTGGTGCCATGATTCAGATTT
GTGCTTAGTTAAGCATGTTGACATGGATTCCAAACTCCCTAAGATTCAAC
GTTAGGGAAGGTTTTATGTCAATTATTTTTTCTACTACAATCATGCCTAG
AAATGCATAATACAATAAGTCAAATCAATGTTAATATAATTGTATTAGGG
AACAGCCACCCCACAGATTGGTGCGATGGTGTCTGGAGCGCTTAATATCA
ACCTCTTCCTCTTTAAAGCTGGGCTGAAGTTGACAGGTTATCTACTGACA
ACAAAGTTACCTACAAAGGCGGAGGTTGGGTTCAGCAAGTTTCCCCTGGA
TGTTGGGTAAGACATTCATTCTTTGCCTTGTGTTTGATTCATTCATTCAT
TCCCAAGATCAAATGATAAATGGCAACTAAGAATGTCAATTACATATTTT
GGCTTAAAGACATACATGTACAGTACATAAGATACGTTTCTTGCAGTAAT
GACTCCTGAAATGCATTCAAAGTGCAAGTCATTTTTTTTGACAGGACAAA
AAGAAAGAAAGGGTTTGAGGGTAATTAAGTGATGATTTGACAATCCAGTT
TGTTTACGGTTTAGTAACCTACATGTAATAATTGTACAAAAGGGAAGTAA
ATGGAATTGATTTATAGCAACATACATGTATCCTCTAGTTCTTGTCCTTT
TCTCTAACTTTTTTTTACTTTTCAGAATTCGGATGGACCTTGAACTTATA
CCTCTTCGACTTGAACTTCGGGCTATCCTCAAATTGACCATAAACCTCCT
GTTTACGTCATTTGAGAAGACCCTGATTAATGTATTGCTGTGGGAATACA
CGACGCCTTCTATCACAGCAAATATTTTCAACACATTCAGCAAGGAACCT
GATGATTCACCCCCTTCATTCAATGATTTTACCACATCGGTAGGTAACTA
GCTTTTATCACAGTAAACTGCAATCATTGTCGAGAAAGTTATGTTTTCAT
CAGTGTTTGTGTATGTGTGTCTGTCTGTCTGTCACCATGATAACTCAAGA
AGGACCGTTTTTGGTCTGTGGATCAAAATTAGATTTTGGGCCCCCTAGAA
ACTTTCTGGGAAACTGCAGCAGAACTTCCTGTTTTGATATCTCATGTTCT
GAACATGGTATGGTCATGATGTTTGAGTGGACGGTACATGTAGCTCTTGG
GAGGGAGAGAAAGTAATGTAGGTTTGGGCCACCTAGTGGCTTTTTTGGAG
ATGATTTTGTTTCAAACTTTGAAAGAAGATAGGAAGGGATCATCATGATT
TTTTGCTGCATGGTTCAGCTATTCCATTTACGTGCAGGGCAAAAGGCACC
CTTTTTTCTAATGTGTATATTTCATAGAATTTGGGTTTATAAATTTTGAT
TAGCATGTTTCTTTCAAATGTATTTGTCAACAGTCGGGAAACGGTGTTGG
AAAACGTGCGTCTGCAACGAGCCAGTGCAGCGTAAACCAGATTCCAAACC
GTGACTACACCGAGCCAGCGTTTCAGCTTGCCATTGCTGTGGAGGATGAT
CTGAGCAAGGTGGAGGTATCATACTGCATCGCCACCTTTGCAGGAGGAAG
TGACTTGGCCAGGGACGAAGTCCTGGGAGGCCCATCATCTGTTGTTGAGC
AGGTAATATAAGTTAGGACGCTAACACTTGCAAGCAAATGCAACTGTTAC
AGTTGTTGTTATTTCCCCCCTTATCAAGGACTTAACTGGGTAACTGTTTT
TCAACACCTCAACTGCAGAATTTAGAAATCTGATGTCCATTTTTGCATTT
GGTGCACGTACCTGTACAAGTACAACAATACTATATGGGATGTCCAATGC
AGCTTTGCCTTGAACGCACATGTCATATCAATATTCAAATCAATATTTTC
ATCTACCATATGCATACTCCTGTACCCCTTTCCACAGGTTTTGCCAACCC
GCGTTCCGCTCTTCTTCACCGTGAAAGCTGCCAATTCAGCAGGAGGGACG
GCCACTGTGACCTGCAGCCTTGACTTCTATGACTTAACCCCTCCTGCGGG
CAGGGTGATTCCTGACTTCTTCACCACCAGCCACCCGAATGTGCTAAAGG
CAT

Coding sequence (CDS) from alignment at Sc0000014:2339513..2345015+

>transcript:BL96924_cuf1 ID=transcript:BL96924_cuf1|Name=transcript:BL96924_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1239bp|location=Sequence derived from alignment at Sc0000014:2339513..2345015+ (Branchiostoma lanceolatum)
GTGGACTTGAGTGCTGCAATGTGTGCCAAGGATAAGTGCCAGAAATTTGC
CAAAGTATTCGACAAGTTGACCCTCACCCTTCCCCAGTGCTCTGGTGTGC
GCTCTTTGCAACCTAAGGGAGCAAAAATAATAGACTTGAACGAACTGAAG
GAAAAGACACTTCAAGAAATCAAGGAACTCTTCGACATAAAAAATCCAGG
CTCGTTTGACATCCAAGAGCTCATGAAGAATCTCCGTGAAGCATATTTAG
AGATCGCCAAGGATGCATTGAACAATCTCCTGGGAAAGCTGTTTGCCGGA
CAATTCGACAGCTTCGATGTGTGCATGGAGGGAGGGAAAACATTTGGCAG
TGACATAACGTTCTTTAAAATCACCTTTAATTTCTTCCTTGGGCCAGTTC
CAATGGAGTTTGTGTTCTCTGCAGGGGGTAGCTGGAAGGTGCAGTGTGGT
GTCAAGCTTTGTTTCCTTACCATGAAGGCAGAGGGAACAGCCACCCCACA
GATTGGTGCGATGGTGTCTGGAGCGCTTAATATCAACCTCTTCCTCTTTA
AAGCTGGGCTGAAGTTGACAGGTTATCTACTGACAACAAAGTTACCTACA
AAGGCGGAGGTTGGGTTCAGCAAGTTTCCCCTGGATGTTGGAATTCGGAT
GGACCTTGAACTTATACCTCTTCGACTTGAACTTCGGGCTATCCTCAAAT
TGACCATAAACCTCCTGTTTACGTCATTTGAGAAGACCCTGATTAATGTA
TTGCTGTGGGAATACACGACGCCTTCTATCACAGCAAATATTTTCAACAC
ATTCAGCAAGGAACCTGATGATTCACCCCCTTCATTCAATGATTTTACCA
CATCGTCGGGAAACGGTGTTGGAAAACGTGCGTCTGCAACGAGCCAGTGC
AGCGTAAACCAGATTCCAAACCGTGACTACACCGAGCCAGCGTTTCAGCT
TGCCATTGCTGTGGAGGATGATCTGAGCAAGGTGGAGGTATCATACTGCA
TCGCCACCTTTGCAGGAGGAAGTGACTTGGCCAGGGACGAAGTCCTGGGA
GGCCCATCATCTGTTGTTGAGCAGGTTTTGCCAACCCGCGTTCCGCTCTT
CTTCACCGTGAAAGCTGCCAATTCAGCAGGAGGGACGGCCACTGTGACCT
GCAGCCTTGACTTCTATGACTTAACCCCTCCTGCGGGCAGGGTGATTCCT
GACTTCTTCACCACCAGCCACCCGAATGTGCTAAAGGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96924gene:BL96924Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96924_cuf1transcript:BL96924_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96924_cuf1-E1BL96924_cuf1-E1-1564476830-120895Branchiostoma lanceolatumexon
BL96924_cuf1-E2BL96924_cuf1-E2-1564476830-120897Branchiostoma lanceolatumexon
BL96924_cuf1-E3BL96924_cuf1-E3-1564476830-120899Branchiostoma lanceolatumexon
BL96924_cuf1-E4BL96924_cuf1-E4-1564476830-120901Branchiostoma lanceolatumexon
BL96924_cuf1-E5BL96924_cuf1-E5-1564476830-120903Branchiostoma lanceolatumexon
BL96924_cuf1-E6BL96924_cuf1-E6-1564476830-120905Branchiostoma lanceolatumexon
BL96924_cuf1-E7BL96924_cuf1-E7-1564476830-120907Branchiostoma lanceolatumexon
BL96924_cuf1-E8BL96924_cuf1-E8-1564476830-120910Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:2339513..2345015 +
Properties
Property NameValue
Transcript idBL96924_cuf1
Biotypeprotein_coding