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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96925_cuf4 >transcript:BL96925_cuf4-protein ID=transcript:BL96925_cuf4-protein|Name=transcript:BL96925_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=307bp
PPELIYLRDGLDPDKDARYSASTTELTANWMFIDEETGVDYLELQVYQKH
GGTRSPIGQSVTLDGGSQNWTSTQPLTLNIGALYTIRVHAINAAGLTAVH
ETDGVLIDPTPPEILFIHAGVLSGMDEELTNSFVVVANTGILAASWLGLD
GESGIDAYWIGLGTTHGGDDVVGFYNVGEVTDIILTELTLNLFENGSPIY
YVSVRAQNGAGAFSTTVTSSPIKVVAADVSGIVFDGAGSKELSEMASTAI
DVDFQLETTTASLHFEGFESAQHGIAAYEWGIGTSPGSDDVQPFTDMGIV
SLEVSGQ Run BLAST on NCBI mRNA from alignment at Sc0000014:2353082..2358142+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96925_cuf4 ID=transcript:BL96925_cuf4|Name=transcript:BL96925_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5061bp|location=Sequence derived from alignment at Sc0000014:2353082..2358142+ (Branchiostoma lanceolatum)
TCCTCCAGAACTGATTTACCTTCGCGACGGCTTGGACCCTGATAAAGACG
CACGATATTCAGTAAGTTTTGTTGTTTCCTGTCAGTCATCTAGTTATCAA
GATTACCAATTACAACTGAATTGTATTCTGTATAAAGTAGAGTGAACTCA
CTCCCCAGCTAACCAACATCTATTGTACCACAGTCATCCCTCAGTAAAGC
ATCTGCATGGAGCCGCATAGTTCCTGTTAAGAACTTTTATTGACAGAGGG
CAAAACCGGTCTGACAGGCTGAATAAAAGTTCTAAACAGGAACTATATAT
ATGCGGCACCAGATGTCTTACTGAGAGATGACTGCAGTGCAATAGATGTC
AGTTAGCTTTAAACTGAGTCCACTCCACTTTAAACTGAATTGTATTCTGT
TTTGGAAATCTTTTAAAGCTAATCCAAATAATTTTGTATTGATTATTAGG
CAAGTACCACAGAGTTGACAGCAAACTGGATGTTTATCGACGAGGAAACA
GGTGTGGACTACCTCGAGCTGCAGGTGTACCAGAAACATGGCGGTACGAG
GAGCCCTATTGGACAAAGGTTTGTCTGGGGCTTTTTGCTTAAGTTGAAAA
TGCACATTGATGAATGTAAACTTTACAGTCATGTGCATTGTAGTGTCCTA
CATTTTCCCTCGTATTTAGTTGTATTTTGTTTCTATTGGGGCTTGATATT
GACTATTCAACTTGAACATACAACAATCTTTATTGACAACAAAAATACAG
CGACTTTCGTAAGGTCTTCTCCCACTATACATGCAAACAGACAATTCGAT
ACAAAAGAATTAACCTACGTACATGTACAATTATATGGATAATTCAACAT
GTCGAGTTTAACGTGTCACTTACACTGCTGGTTCTTAGGTCTAAACATTC
TTTGATATAGTATGGGTAAAAGCATTATGTGTGTTGCACTTATTCAAGCA
GTAACTGTGGAAAACCACATCTTATGGTTAATATGTTAATTATATAATTC
CAGTGTTACTCTTGATGGAGGATCGCAGAACTGGACGTCAACTCAGCCGC
TAACTCTAAATATTGGTGCCCTCTACACCATCAGAGTACACGCCATCAAC
GCCGCTGGACTAACAGCAGTTCATGAGACCGACGGTGTTCTTATTGATCC
AACACCCCCTGAGGTAATGAATGAAAAATAGGTTGAATATGTAGTTCTTT
GCATTGTAGATAAAAGTACATGCACAGACTGGTCAATGATTGTAAAGTTT
ACAGTCTAAACCTACACAAGCCATGTCAAAGTAGTTCCATAGATTTTCAT
CATACTGACGTACAATCATCAACTACCTTGTTGTAGTGATTAACAATAAC
ACAGAGTTGAGTGCAATGAACTAACAGTAACTGTAACCATTTGCTTTGCA
TCTCTACTTTACTCTGCTGCTGCTTCTACTGCTCTCCTGCTTCCTCTATC
CCTTAGTCCAACTTAATTTGTCCCTAAGGGCACCACAGAAGATCTGGCAA
CCAGCTTTCTCCAGTCTTCTCTGTTTTCTGTTTTTCTTAGTGTTTCACTT
AGTGTCATGCTATTCTCTGATATTATCGTCCCATCTTTTCCCTTGTCTAC
CTCTCTTTCTACTTTACTAAGAAGACAAAAATGTTGATTTTGGATACACA
GATCCTATTTATTCATGCTGGAGTCCTCTCCGGAATGGATGAAGAGCTGA
CAAACAGTTTCGTTGTCGTTGCGAACACGGGAATCCTCGCTGCCAGTTGG
TTGGGTCTGGATGGGGAAAGTGGAATAGATGCCTACTGGATAGGGTTGGG
AACTACCCATGGTGAGTAGAAAAAGATATGAAAAGTACACAGTCTGTAAC
AAGCTATCATATAAATATAAGCACTCTCTTCAGAGGTATGAGTCTCAAAC
CTTGGGCACCTGATCTCAAAAAGTGCTACTCTCCAAGAAGAGGTTAGGCC
CTGGCTTGTTTTGGGCGTCTTTTAAAGTGTTTTTTATCTGTCAGGTTTCC
TTTTTTCTGCCCAATAAAAATACGCCAAAAGAAGCTGCAGCCTTACCTAT
GCTTAAAGAGTAAAAAAGCTGCTGCAATGTACTTAATAAATGCTCATATA
GAGCATTTTTATGCAATTGTCATTGCTGTCTACTGCCATGTTGGTGTCCT
TATTTGCATTTCAGTGAATCATAGCTCAGATCTTCTGATCCTCTTAAGTA
ACCACTAATACATATTTATGTCTACAACTCAAAGAAAAGAATACTAGAAG
GAGGCCTATAGAAACTTGACAATGAAACACAAAATTGATGTTAAGGATGA
TATGATATGTCAGCTTGAGCAACAATCCATGCAAATACAAATATGGGACA
CTAACATGGTGGTCAGCACCTGCCTGCTTCTTTGGAAAATAATTGCAAAT
GCTCTATTTGTCTAGTAATATCTTGTTAATACCAATCAACATATTTTATG
TTAATACACAGGAGGAGACGATGTAGTGGGATTCTACAACGTAGGAGAAG
TAACAGACATCATTCTAACAGAGCTTACCCTTAACCTTTTCGAAAACGGA
TCCCCGATCTACTACGTTTCAGTCAGGGCACAGAATGGTGCTGGGGCTTT
CTCAACTACAGTGACATCAAGGTAGACCTTAAAAGTTTCATTGACACAAA
GGGATAAGATATGTTGTGATTAATCACTCTGCTGTCATTTGTCGAAATCA
TGTCTTCCTTTACAACAGTATCACATTATTGCTCTCTTATCTAACAATCT
AATCTTATTTTTGCAAGTAATGACTCAGCAACCATGCTGTCTTCTTAATA
ATTGAACACTTGATCCTTAACTGTTACTGTAACAGTGAAGTTGACTTTAC
TCTAATTCCTCCATTGGTTTGTCATTGTCGGTCAAAGATGTTTGACTTAG
AATTCCAATTAGCATTTTTATGATAACCATCATTACGATTTTTGTGCACC
AGTCCTATCAAGGTAGTAGCAGCTGATGTCAGTGGAATAGTGTTTGACGG
TGCTGGATCCAAAGAACTGAGTGAAATGGCATCTACAGCGATAGATGTCG
ATTTCCAATTGGAAACGACGACAGCGAGTCTGCATTTTGAAGGGTTTGAG
AGTGCCCAACACGGCATTGCCGCCTACGAGTGGGGAATAGGGACCAGTCC
TGGCTCTGATGATGTTCAGCCTTTCACAGACATGGGAATTGTGTCACTAG
AAGGTAATCATACAAACATTGATGTACATTGTAGTCTTTGTTTCTGAGCC
ACAGAGATATTGTCTTTGCCACTGTGGCTGTATGAGCAAACTGAGAACTA
CTTCTTGAATAGGCCAGGTAATCCAATAACAATGTAAGTCTTTTTGTATC
TGACCCACAAACTGATAATGTCCATGTGTGACAGCTATATTACATATTCA
ATCATGTATATGTATAATGTTAAAGATGGTACTAACGACTGTACTATATG
TATATATGTATGACTCAATGTCTGTTTTCTTTGGGCCAAGGATCGTTGAA
TCAAAGATTGATGCAGTGGTTTCTTCAATGTTGTTTTTTTTCGTGTTTTT
TTTCAACAGAGCCTTCTGGAAGTGGAATCGCTCAGATTCTTTTACCACTT
TCCGTGGACATTCACTATTTCTCCAGTGTCAGGGCAATAACTGGGGCAGG
AAACATCCTAGAGTCGACGTCAGATGGCTTTGGTGTTGACCAATCGGCTC
CTAGCGTTTCAATCATCTCGGTTGGCGAGGAAGATGAGGATGAGGAACAG
CAGAAACAAGAGACAGTTTACCAATCAGCAAACGTAGGTAGCTTGTCTGC
AGAATGGACCGTAGGAGACAACGAAAGTTCCATTGCGGGGGGGTGGTTTG
CCATTGGGTCTTCACCAGCCAGTGCTGACGTGTACAATAGCACGAACACG
AACAAGAGAACCAGTCTTCCAGCTGGCCTTCTAACACCTTCTACTGATGG
CACTCCAAATATAGTGACTGTGTCTGCAATAAACAAGGTAAGGGTCATGT
AACTTACAACTTTTTTTTTTACTTCGATGTAATTGATTATGTTAAGGACA
TAATAGATATACCGATACAAAACATTGTAATCAACTGGACTTTATCACTG
ATTGTGGCCCTACAATTAGTACAAACGTTAATTTCGCTACTTACATGACC
ATTGTTGCTCAGACAGAAAGGCCAGCCAAACACTGCAGCTATGACCAGTA
GCTGGTGTCATGGGGTTTGCAGACCAACTTTATTTATTTAAGTATTACAG
ACATGACAGATGAGTTTGTAACAGGGCATCCTTTAGATGGTGTATTAGTT
TGAAGACAACAAACTGCCAGTGGGAAAACAGATATTTCTCTATCCATTTG
TTTGCTTCTATTCATTTGTTTGACTTCTGCAGGTTGGGCTGGTATCCTCG
GATGTTTCTCCTCCAGTTGTTTTTGACGCGACTCCACCGGAGCATGTCGA
TGACATGGCATGTCCTCAGCACATATCCGGCGAGGTGCCGTTCACATGTA
GCTGGGACGGCATCAACGACCAAGAAAGTGGCATTCAACATTACATCGTC
AGTGTCGGAGTCAGCGAAGGGGACAATTCCATTGTCAACTCCACGATCAT
CTATCCACCAACAAGCCACTTAAGTGTATCAGGTGAATAGAGAAATATTC
AATGTATTTCTATCATGTACTGTATCTAACTCTGTATCTCCACAGGCCAA
TATATGTAATGCTATGGAAAAACCATGTTTAAATATGAAATACCACACCC
CAATTGATATTGTCAGACATCACAGTTGTAAATGTTATTATGATGTTACT
TGACTGAACTTATTTTTTACCTTATTACAATTACATGATTATAATCTTGT
CAGGCCATAGTAGGTAACTGATAATGTTCAACTATTGTCTTTTTTTAACC
ATGACATAGGTTTGAACGAGAGTTTCCTTCAACAAGGAGCAACATTGTAC
ACCACCGTGACAGCAGTGAACGGGGCAAATCTTCGCAGCACCAGCTACTC
TAGGGCCATTCATGTTGACACGACGCCCCCAGTACTTGGAGTAGTAGTTG
AAGTCAATGAC Coding sequence (CDS) from alignment at Sc0000014:2353082..2358142+ >transcript:BL96925_cuf4 ID=transcript:BL96925_cuf4|Name=transcript:BL96925_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=924bp|location=Sequence derived from alignment at Sc0000014:2353082..2358142+ (Branchiostoma lanceolatum)
CCTCCAGAACTGATTTACCTTCGCGACGGCTTGGACCCTGATAAAGACGC
ACGATATTCAGCAAGTACCACAGAGTTGACAGCAAACTGGATGTTTATCG
ACGAGGAAACAGGTGTGGACTACCTCGAGCTGCAGGTGTACCAGAAACAT
GGCGGTACGAGGAGCCCTATTGGACAAAGTGTTACTCTTGATGGAGGATC
GCAGAACTGGACGTCAACTCAGCCGCTAACTCTAAATATTGGTGCCCTCT
ACACCATCAGAGTACACGCCATCAACGCCGCTGGACTAACAGCAGTTCAT
GAGACCGACGGTGTTCTTATTGATCCAACACCCCCTGAGATCCTATTTAT
TCATGCTGGAGTCCTCTCCGGAATGGATGAAGAGCTGACAAACAGTTTCG
TTGTCGTTGCGAACACGGGAATCCTCGCTGCCAGTTGGTTGGGTCTGGAT
GGGGAAAGTGGAATAGATGCCTACTGGATAGGGTTGGGAACTACCCATGG
AGGAGACGATGTAGTGGGATTCTACAACGTAGGAGAAGTAACAGACATCA
TTCTAACAGAGCTTACCCTTAACCTTTTCGAAAACGGATCCCCGATCTAC
TACGTTTCAGTCAGGGCACAGAATGGTGCTGGGGCTTTCTCAACTACAGT
GACATCAAGTCCTATCAAGGTAGTAGCAGCTGATGTCAGTGGAATAGTGT
TTGACGGTGCTGGATCCAAAGAACTGAGTGAAATGGCATCTACAGCGATA
GATGTCGATTTCCAATTGGAAACGACGACAGCGAGTCTGCATTTTGAAGG
GTTTGAGAGTGCCCAACACGGCATTGCCGCCTACGAGTGGGGAATAGGGA
CCAGTCCTGGCTCTGATGATGTTCAGCCTTTCACAGACATGGGAATTGTG
TCACTAGAAGTGTCAGGGCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:2353082..2358142 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96925_cuf4 |
| Biotype | protein_coding |
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