transcript:BL96927_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96927_cuf1
Unique Nametranscript:BL96927_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96927_cuf1

>transcript:BL96927_cuf1-protein ID=transcript:BL96927_cuf1-protein|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
QQYEAKRKKEKSRQNSMACYQVVVLVFLFLITAGIAYLVYNGTDTTSLLR
SDQFGSLSATQSSCLPNPCLYGGVCEEGKDGYTCRCPAGREGDNCETSAA
CTGNPCKNGNCTEDPTGYYCTCEAGWTGPRCETELFCASQPCQHNGVCLD
GANGFYCFCEEGWVGKQCDTDVDECKSNPCGTNQVCINQPGNY
Run BLAST on NCBI

mRNA from alignment at Sc0000014:11803..16355+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96927_cuf1 ID=transcript:BL96927_cuf1|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4553bp|location=Sequence derived from alignment at Sc0000014:11803..16355+ (Branchiostoma lanceolatum)
CACAACAGTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCA
ATGGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGC
TGGAATAGCATACCTGGGTAAGTCTGAACATTTCGACCTAAATGAACCTT
TCTGGGGCCTCTCTTGTTTTTGCTTTTTATCAATGATCTGCCTCTCGCGG
TTAGCAACAAATTAGCCCTATATGCAGACGACTCAAAATGTTTCAAAGAA
ATAATAACTGTTATGGATTGTGTGTCTCTTCAGAGGGACATTGAGTGTAT
GTATGATTGGGGGAACACATGGTCGATGATTTTCAACCCCGATAAATGTA
AAATTCTCAGATTTAGTAGGCAAAGAAATCCCGTCAAGTTCACCTACAAG
ATGGTTGACACCGTCCTAGAAACGGTTTCTGAATTCACGGATTTAGGGGT
ATTGGCTGACAGGCATTTGACATTCAATTACCATGTACAAAATATAATAT
CAAGAGCGAATTCGGCCCTGGGCTTCATAAAGCGATCAGTGGGTTTTCAC
GCCCCTCCCAACGTTAAGAAAATGTTATACCTCACCCTCGTCAGCAGTAA
ACTTGAGTACTGTTCCATAGTATGGTCTCCCTACACCCACAATCTTATCT
CCTCAATCGAAAAAATTCAAAGACGGGCTTCGAAGTATATACTCAATGAC
TACTCCACTAACTACAGAATTAGGCTAATGCAATGCTCACTTTTACCACT
CTCATACAGACGTGAAATTCTAGACCTCTGTTTCTTATTTAGATGCTTCC
TAGGATACTACGACATTGATATTAACAAATATATCAAATCGCCCCATCCA
TCACTCAGATCAACTTCTCAGTATAAGCTCCAACCAGAAAAGTGTCAAAC
CACAACATTCAAAAATTTCTTTTTTCAAAGGATTGTACATATATGGAACC
GATTACCAGTTACCACCAGATCCCTTAGAATATGCCCGAACGTCTCCTTT
GTAACCTTTAAGAAGTCCATCCTCAGTCACTACCACTACCTTCTATGCGA
TAAATTTGATCCCGAAAACATATACACCTGGTACACACCCTGTTCCCAGA
CTCTAACTTAGTAATTATTATCATTTTTATATCATCTGTACTATTTGTGT
TATCTTTATTTCTATTTATTGTTTCTATTTATGCCAATATTCGACATTAT
TCTGTGTTTTTTGTGTACAATTGATTTATTCAATAGTGGTCACTTTTTAT
CATTTATCCTTGTGTAATTATTATTTGTTTCTCTCGTATATATTAACCAT
GTTTTTTATGTTGGACAGGGGTCTAGTGAAAGAACTTAGTTCTGTTACCC
CTGTCCAGTTACCTCTGTAACGAAGTTTTAATAAATAAATAAATAAATAA
AAACGTTAGGAGAAATGAAATATTATAGTTATCGCAAGTGCAATGTGAAG
CGATTAGGATAACCATAACTATGACCAGCCAGGTTCAAATCGTACGTTCA
AAAGCATTCTCGGAATCAGCAACGTTTGAAACACAAAAGTTTGCTGATTT
CCAAAATGCATTCGAGGAAACCGGACGTGAACGTTGTCAATGTTATCTAT
GTTGTCTTAAAAGTATTCGAAGCAATGTTATCCTATAAAAGAGGAATAGT
ATAAGTCAGATGTCTTCTTAAACCCTGTGTGTACTGGACTATAACCAAAT
GTGAGCGTTGAACTACATGTACAACAGAAGTGATAGTTATTTGTCATGCA
AAGAATAACTTACTTTTCAATTCTCCGTGGAAGCTATAAAGTTTCATTCA
CCGGAAGCAAAAAATAGTCTAAGTCGTCTTTCATAGAATGATTTTGTACT
TTGATGTTTCTTTTTGCAGTGTACAATGGAACAGACACAACATCTTTGCT
CCGCAGTGACCAGTTTGGTGAGTGTTTCCTAATGTTTTTCACACGTTTGC
CACTAAGTGCTAGTACCATTGACTTACTCCCTGCTTCGTGTGTGTGCAAC
AAAAGGAAATAAATGGTCTCAATATCTGTTTGACCAGAGACACTATTAAT
CAAATTTACCTGAAAAACAATCTGTTTGACCAGAGACACTATTAATCAAA
TTTACCTGAAAAACAATTTTAAAACTCACAGATGAGACCTTGGAATCGCC
CATAGGTCACTGACTACACAAATTGAGGACATAAGTACATTTTACAATTG
CTTACCTGAGCATGTTGTTATCGCACACTAGAAGACTGTACGTGTGCAAA
TATTTGTCATAAAAGACAAGTTAGCAGTCTGGCCCCTTTGTCCAATACAA
TAACACTGTACTGTGGGAAAAGCAGAATTCGTCCAACTTTCACGATATAT
AGATAAGCTATCAGCAAAAACACAAGCTGATATCATGTTTTGCGTTTCTG
TCCGTGAGACCAATCATCAGTATTCTATCAGCCACCTTCAGGTTAGCCCG
AGTGATGACATCAGGGAAAACAGCTATTCATCCAATATGCTGACGTTTAA
AAAACAAACTTTATTTGAGTTGGTTTGAAGTTGTTGATACGTCATCAGTC
CTTGCACTTAAAGCTCGCGATTGATTAATTACCCGTTCAAAAGATAACTG
ACTATTTGTTCAAAGTCAACTATACAGCCAAAGTCCCTTTTTGATATTTG
CTAACTTCAATACTTGAAAAATGGAGGAACTATGTCTATTTTACTTTGAT
GTTTGATGTTCTTGTTTGTTACTCTATTTCAAACCATGTCCTACTCGATG
ATTTATCATTTATTCAACCTGTTTCTCTTTAATTATTTTGTACCTTGATT
TGAGGCTGACTTATGTTTTTCTTTGTTCAAGGGCTTCAATGGAAATCAGT
TGCTTTTTAAACAGAAGGGACCACCCTTAAGGTTTTAAAAAACACAAATA
AAAATGTAAACTTGTTCTTTCTTAACAGGCTCCTTGTCGGCAACTCAAAG
CAGCTGTTTGCCTAATCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGAA
AGGACGGCTACACCTGCAGGTGTCCCGCAGGACGGGAGGGGGACAACTGC
GAAACAAGTATGTTTAAACATATCGCTTGACAATTACGTAACTGTGCATA
AATGTTGCTGCTAGTAAAGGACGTGCTATGTCTCTGAAGACTTTGGGCAA
ATCAAAAAATTATTCTCATTGCATCGTAATAAATCTCGTTGTGTCTAACC
TCTTTTCACTATATTTGGACACAGAATCAACAAGAGTTCGGAGACCTCAT
ATCTCCATGAACAATTCTATTTATGCAAATTACTTACACATTTACATAAT
ATATGCTTAATCATAAACACCTTTACCTTACTTACACATGTTGCATATTG
ACAGTCCTATAATTTTACAATTAGATGAATTTGGGTGTTTTCGCATTAAT
TATGCAAATTAGGAATCTATTTAGACAGAAAGACAGACACACACCCAAAA
ACTATATCTCCATTTTTCATGGAGATAACATGGAGATAATAAAAGCACTA
TACTACATATATCTATGATGTCAAGAGAATGTAGGAAAAGATAAATAATG
CTTTAATTCTAGAGAAAATTCTTTCAAGCATGTCTGTTGTTGCTGTTCCG
CTAGGTGCTGCCTGCACAGGAAATCCGTGTAAGAACGGTAACTGTACTGA
AGACCCCACAGGCTACTACTGCACCTGTGAGGCAGGTTGGACAGGACCGA
GATGCGAAACAGGTGAGTGCTGACGGATAAAACTATGTTTGAAATGTAAA
CCATGATCATGAAATTAAGGCCATAAACTAATAAAATACTTAATTAGAAT
GGTTACAAGAATATTCCTCAAACAGTGACTTAAAAGGGTAGCGAAATACG
CACCTCCAAATTTTCGACGTCTTCTGTACGTCTTGTTCACGGAGTGACCT
AGTCTCGCGAGAACACGAGACTAGGCCGAAACTTGTGAAGATCGTCCTGC
CTCTGTCCTGCCTCCCCCGCCTCCTTGTTGTCACTGTTTGAGGAATATTC
TTGTAACTGTTATCATACGTGACTGATGAACCTCTTCAATTTTAATTAGA
ATGTAAAACACTTAATTAGAATGTTTGGTATATTAGAAAAACGTTTTAAA
AGAAAATATTTGTAAAGAGTACATGAGTGACTGTTTTAAACACTTGTCTC
TACAGAGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTTGCC
TGGACGGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTCGGC
AAGCAGTGCGACACAGGTAAAACACATAACTTTCTGCTGCATTATAAAGA
TAAAATTGGTAACATTACAGTGGTAATATTACCGATTTTATCTTTATACG
AACCAACGTCAGATTGAAGTTAGTTTTTTTTTTGTATGCAAACTGCAAAC
TTGACCATTAAAGGGCATAGCCTATTCATGTATGTCACTTATGATAAACA
AAGTGGCTTAGATTTTATATGTGTTTTTCTCAGACGTTGACGAGTGTAAA
AGCAACCCGTGTGGCACAAATCAAGTATGTATCAACCAGCCCGGCAACTA
CAC

Coding sequence (CDS) from alignment at Sc0000014:11803..16355+

>transcript:BL96927_cuf1 ID=transcript:BL96927_cuf1|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=579bp|location=Sequence derived from alignment at Sc0000014:11803..16355+ (Branchiostoma lanceolatum)
CAACAGTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCAAT
GGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGCTG
GAATAGCATACCTGGTGTACAATGGAACAGACACAACATCTTTGCTCCGC
AGTGACCAGTTTGGCTCCTTGTCGGCAACTCAAAGCAGCTGTTTGCCTAA
TCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGAAAGGACGGCTACACCT
GCAGGTGTCCCGCAGGACGGGAGGGGGACAACTGCGAAACAAGTGCTGCC
TGCACAGGAAATCCGTGTAAGAACGGTAACTGTACTGAAGACCCCACAGG
CTACTACTGCACCTGTGAGGCAGGTTGGACAGGACCGAGATGCGAAACAG
AGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTTGCCTGGAC
GGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTCGGCAAGCA
GTGCGACACAGACGTTGACGAGTGTAAAAGCAACCCGTGTGGCACAAATC
AAGTATGTATCAACCAGCCCGGCAACTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96927gene:BL96927Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96927_cuf1transcript:BL96927_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96927_cuf1-E1BL96927_cuf1-E1-1564476830-118064Branchiostoma lanceolatumexon
BL96927_cuf1-E2BL96927_cuf1-E2-1564476830-118066Branchiostoma lanceolatumexon
BL96927_cuf1-E3BL96927_cuf1-E3-1564476830-118068Branchiostoma lanceolatumexon
BL96927_cuf1-E4BL96927_cuf1-E4-1564476830-118070Branchiostoma lanceolatumexon
BL96927_cuf1-E5BL96927_cuf1-E5-1564476830-118072Branchiostoma lanceolatumexon
BL96927_cuf1-E6BL96927_cuf1-E6-1564476830-118075Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:11803..16355 +
Properties
Property NameValue
Transcript idBL96927_cuf1
Biotypeprotein_coding