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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96939_cuf3 >transcript:BL96939_cuf3-protein ID=transcript:BL96939_cuf3-protein|Name=transcript:BL96939_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=622bp
STTPVRQTGSDQAVHWFSVSRKIVAILTGYIQAKGSDMAHHIITVVLAAL
LTLLEVEAVADVTTPAGRLVGLELDVLGTTVHAFLGIPFAQPPVGERRFR
RAEPMEPWDGIYNARRRPNACSQNREVVNDESNLWGLNTPKSEDCLYLNV
WQPTPVPTGAAVLVWIYGGAFEWGSSSIPAYDGRYLAATEGVLVVSFNYR
VSGLGFLYAGTEDAPGNVGLTDQVLALRWVQDNVAAFGGDPARVTLFGES
AGGISIGYHLISPGSRDLFSRAILQSGTALNPWGYNSEADAYEKTVIFAD
HLGCPAEKGSAEMLACLREKDAQQLVDTSVVGYAAIIAVVDGSFLPESPP
VAYQSGAFKSADLLLGSNEDEGAFFLISNQYPGFSEDSESLITKEQFLEC
IRYYYPPLNEFAVDAVAFQYTDWERLDQDTMYRDAMDDLYGDNSFVCPDV
NTGRAHLRHGATPYMYRFAHRPSNSPEPAWVGAVHADEVPFVFGLPLDPV
YGFTEEEKDLARRMMRHWANFARTGNPNNNDEAVWSAFNATDGGYMVLDT
SEPRMLTGPSTENCAFWDNYLKPLWNKTEALMNDVPCATGSGVPQYNRPG
IVGRSLTACVLAVVLHLVTVYC Run BLAST on NCBI mRNA from alignment at Sc0000307:283449..288944- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96939_cuf3 ID=transcript:BL96939_cuf3|Name=transcript:BL96939_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5496bp|location=Sequence derived from alignment at Sc0000307:283449..288944- (Branchiostoma lanceolatum)
CGAGCACCACTCCCGTTCGGCAAACAGGTAGTGACCAGGCAGTGCACTGG
TTTAGTGTTTCCAGAAAGATTGTCGCAATTCTAACTGGATATATTCAGGT
ATGTAAATAACTTAAGATGTGGCTCTCTGGCTATTTCATTGCTGTATATA
TTAAGCACGGGGTACAATGCCAATACGGGGTACAAGGCTGGCAAACACTA
AGCGGTGGTAGGTCGTCCAATTTTTTTTCTTCTGATATCCTTCAGATTGG
TCAGTGTGCAGTCTAACCTAGCCTATCAGAGAATTTCATGTTCCTCCGAA
ACTCAAAATTATTGTCATGTCATAAAATGTCGTCAAATGCGGCGTTTGGC
GATTGTTTGTTCACCTTAAAACCTTCGTTGTGTGATGCCATTCTACAATT
GCGGTCGATCTATCTCGACTTTATTTGAAGGCATCATGATCAAGATAATG
TTGACTTCAAATGACCCTGAGATACTTTGCCACATGATACGTTACGTTGA
GTTGCACACATACCTCCGTGAGGGACGCTAGAGGAAGAAATTCTCTACAA
ACTACTTTGTGCGCTGGTCGGCTCCGGAATTTTGATGACGTAGGCTGTGA
CCGCGTGATAAGACCACGTAGTCAATTTTTAATCGAATGAATGAATGAAT
GAATGTTTTATTTTCGTGTCCTGCGACTCAATAAAGTCGCCCAGCCCATA
CGGACTTATAGGACACCAATTGAATACATAGATTTGACATAGGAGTGTTG
GTAGAGGTACAGTAGTAAATAATAATAATCAGAAATAATGATAGCAGTAA
TGATTAACACAAAATAATATGAGCATGATATAATGGCAACACAAAATGGA
CACACCTGGTACATTGATTCAAAACAATTCAAATCTAAAGATAGCAAGTG
GTAAATGAACATAACATATTCTTTCAGTACTCTTTATTTCAGACAACAAT
ATCCATGTGTCACTCAAAGCCTAGTTAGCGTGAGCTTTGATGTCAATTTG
GCCTCATTGAGGCTCTACATTTGCTTGACATTGATCTTCAAGCCGTGTAG
ACTGTCGCCATATCGCATGGTGCCAATAATTTTTAGAATTCGCCCTTAGA
CCCTTTACGCCAGACGACGACCATGCACTGAGCGGCTGTACAGCGACCAA
ATTGGATTTGTTTGACCCTTGATTTAATTTGATGGAATATGATGCAATAT
ATAAAACTACGGTCAAGAATCGATGGGGTCAAAAGCCAGTCGGGTCAAAA
GCTACCCAGAACTTGAATCCAGCTGGGGGCCAGTTGGGGAGCAGCTTGTA
TTTCATGGCGATCGCAGTCAATGCCATCAGAACAGCTGACCGGGTGTGTC
TGCCGAAGTGTTGCCTGAAGTGCCGGGCGAAGACGTTCATGGTTGATTCA
TGTTATTCGTGGGTTTGCACTACTGTTACATTGTGAGATATTTGCTAGCC
CCCTGTACTGTCGGAATGTTCGCATTCAATACATTTGGGTACAACGAATC
TAAAAGCTCTAAACCTTTCCGTAATCGCTGTTTGTTTACCATGCCTTATG
TCGTCATCATTTTCCCCTGCATCTAGGCAAAGGGATCCGACATGGCTCAT
CACATCATTACAGTAGTCCTTGCTGCGCTGTTGACCTTACTAGAAGTAGA
AGCCGTGGCTGATGTGACGACGCCGGCAGGACGACTTGTCGGGCTGGAGT
TGGACGTGCTCGGGACGACGGTTCACGCCTTCCTGGGAATCCCGTTCGCA
CAGCCGCCAGTCGGAGAACGGCGGTTCAGACGGGCCGAACCCATGGAGCC
ATGGGACGGGATATACAACGCAAGAAGGTCATGTTGAAGTTCCTGCCGTT
GCTATTCTTGTCGTATCAAAGACTATCTGTGATTTGAAGTTCGAATATCT
GTTTGAATATTGAATATTAGACATTTAACCTCCTTGAACAAAGTGTATCC
ATTCATATTCACACATTATTGATCTGTTCTCTCAGTAAAAACAACGTATA
ATGGACACGACACGTCGAAATCAGAAGGTTTTTTTTCCGTTCTAGACGTT
TTCTCAATGCGCGTTGTTTTGTTCTTCAATGCCACAACAGGAGGCCCAAT
GCATGCAGCCAGAACAGAGAAGTAGTGAATGATGAATCCAACCTGTGGGG
ATTGAATACGCCGAAGAGCGAGGACTGTCTGTACCTGAACGTGTGGCAGC
CAACCCCCGTCCCTACTGGAGCCGCCGTGCTGGTCTGGATTTACGGGGGC
GCCTTCGAGTGGTATGTTGTAAATATCTAGGACACAGACTTGTTTGGAAA
GACGGTTTAACAGACACAACTTTATCTTTGTGACTACCAGTAGAGACGGT
GTTCGACTTCTTGATATCATTTTAAAAACCGGAATGGGCGATACCCAGGA
CATTATCTTTAACCTTCTCCAAGCTGCCCAACTCTGTAACCAATACAGAA
TGGACCGATCCAGTTCGAACGCTAAAAGCCCCGCCTCCTGTTCTATTTCG
AATAGTCCGTCAAAAACAGCTCTTGACGGACAAAAACGGCCGTGCGCGCT
TGGCTGTCGAATATGCAGACTATCTTCTGTTGAGCTTTTTTGGCTCTAAA
CCCCTTCAGACCAGACCAAAAAAAAATGCTATGCCTTCATTGTGGGCGGC
TGTATCCACTGAGTATGGTTGTTTGAGGAGGGGGTAGATGTTGTTACGAC
GAGAGCGTAATATTTTCGGTCAATGTGGAAGCGGACTGCGTCGCATATCA
TTACCTTGTTGGTGACAATCAGTGCCCGATTTTTGACAAGCAGCCGTTGC
ACGTGTAAAACAGGGTACGTATATCTGTGACAGGGTTCCCACTGTGTTGA
CTGCATGAATTGCAGCTGCATGTCTTTTAGTAATTAAATATCAAAATGCA
ATTCTTTTACTTACCGTGTCGCATTCATATTAATCAGTTTCATAGACAAG
TACAGAAGAGGCGGAACTCTGTACTCGCGGACTTCGTAATAGTTGGAAAT
GTGTTACAAGCTCCCTCCCCATGAGTGCCCGAGCCATTTTCTGTTTCATT
TGGTTTTTTCCTGAGCATACATGCAGCCAATGTAGTGGAAAGCCTGTGAC
AGATGTACATACCCTGTTTAACGCGTGTCATTTCTGTCCAACTAGCGCTG
TTCTTGACGGAGGTGTTCCAAATAGAACAGGGGGTTCTATATGTTCGATA
TGGTGTTCGATGGATCGGTCCATTGGGTGCCAAACAGCTACTTCAGTGTT
TAAAGGTTAACAAAGGAGATATCAAGTGATTCTGATACTTTCTTATAATT
GTTCAAAAGATGTGGTTTAATTGCTATATGATCTTTTTACATGTACGGAT
TTTGTTCTCCTCCACCATCTTATATCAGGGGATCCTCGTCAATTCCCGCA
TACGACGGAAGGTACCTAGCGGCCACAGAAGGAGTTCTCGTGGTGTCCTT
CAACTACCGGGTCAGTGGGCTAGGATTCCTCTACGCCGGCACCGAGGACG
CGCCGGGCAACGTTGGTCTCACAGACCAGGTCCTGGCGCTGAGGTGGGTT
CAGGACAACGTCGCGGCGTTTGGAGGTGACCCGGCAAGGGTGACTCTATT
TGGCGAAAGCGCCGGTGGAATCAGTATCGGGTACCACCTGATATCTCCCG
GCAGCAGGGACCTCTTCAGCCGCGCGATACTGCAGAGTGGGACCGCTCTA
AATCCCTGGGGGTACAACTCTGAGGCTGATGCCTACGAGAAAACAGTGAT
CTTTGCCGACCATTTGGGATGTCCAGCAGAGAAAGGTTCAGCCGAAATGC
TGGCCTGTCTCCGGGAAAAGGACGCACAACAACTTGTTGATACTTCTGTC
GTGGGATACGCAGCAATCATTGCTGTTGTGGACGGCAGTTTCCTACCGGA
AAGCCCACCAGTGGCCTATCAGAGTGGAGCGTTCAAAAGCGCAGACCTCC
TGCTCGGTTCTAATGAAGACGAAGGTGCCTTCTTCCTCATTAGCAACCAA
TATCCTGGTTTTAGCGAGGACTCGGAAAGCCTGATCACCAAGGAGCAGTT
TCTAGAGTGTATTCGCTACTATTATCCACCATTAAATGAGTTCGCTGTTG
ATGCCGTCGCCTTTCAGTACACAGATTGGGAGCGTCTAGACCAAGATACC
ATGTACCGCGACGCGATGGACGATCTTTACGGTGATAACTCCTTCGTCTG
CCCTGACGTCAACACTGGTCGGGCCCATCTAAGGCATGGAGCAACGCCCT
ACATGTACCGGTTTGCCCACCGCCCCTCGAACTCCCCCGAACCGGCCTGG
GTGGGAGCGGTCCACGCCGATGAGGTGCCGTTCGTGTTCGGCCTGCCTCT
GGATCCTGTCTACGGGTTCACCGAGGAGGAGAAAGACCTGGCTCGCAGGA
TGATGCGGCACTGGGCGAACTTTGCCAGAACAGGGTATGTCATTTCTGTG
CAATCTTCTGCAATCTCTGATATTGGATGATACCGGCATAGTTTCTTAAG
CCACTAGACGGCGATCGCTGAGCGACCGTACATTATTGGAATAAGATGCA
AGATGTAAAAGTATGATTTAAAAGACAACAAAATATACAAAACGTCCAAA
AATTCGCAGCCTCTGGTGGAAAGGCCGTGTCTCATGTCACATTTCCAAAC
CGTGAAATTTTGCGTGAACGAAAATTATACAATTCATATTAAGTTTATAT
AAAAATGGTGCTCATGATTAATTTTTGCAACTTTTCTGTGTTTTGTTGTC
TTTTATATCATACTTGTCGTTCACGCAAACTGCCCGGCCGGGCCCCGCGT
TGGGAATTATGACCTAAGCATTATTCGGGTATGTTATCATGTTTGCAACT
CTATTTCAATATGCAACATTGACGTTTCCTCAGGAATCCAAACAACAACG
ACGAGGCTGTTTGGAGCGCCTTTAACGCGACCGATGGAGGGTACATGGTG
CTGGACACGTCTGAGCCCCGGATGTTGACCGGCCCAAGCACAGAAAACTG
TGCTTTCTGGGACAACTACTTAAAGCCCCTTTGGAACAAGACAGGTGAGT
TGATTCTATTCACGGATAGTTGCTAGACTTTCATACGAACCCTTGTAAGA
GACGGACTCTTAGGTCTCTGGAATACTGTTGCTCGAATTCTAGGTAACTA
GTTCTACTAGATTGTATAAATATAACATTACGAAACAATCACAAGTGATG
AATTTACTATTGGAGTAAACTGTTTTGGATTTTCTGTTTAGTTCTGTTTG
TATATAATTTAGGCGGATTAATTTTCGCATTGAATATTTCCTCGCAGAGG
CTTTAATGAATGATGTCCCGTGTGCCACCGGTTCAGGAGTGCCACAATAC
AACCGGCCAGGGATCGTGGGGAGGAGTTTGACAGCTTGCGTACTGGCGGT
CGTCTTGCACCTTGTCACTGTGTACTGTTAGTTTCTTATCACGTTGTAGT
AACATGATGGAGCCAACGACCTCATCAATAAAATGTCTGTTTGACC Coding sequence (CDS) from alignment at Sc0000307:283449..288944- >transcript:BL96939_cuf3 ID=transcript:BL96939_cuf3|Name=transcript:BL96939_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1869bp|location=Sequence derived from alignment at Sc0000307:283449..288944- (Branchiostoma lanceolatum)
AGCACCACTCCCGTTCGGCAAACAGGTAGTGACCAGGCAGTGCACTGGTT
TAGTGTTTCCAGAAAGATTGTCGCAATTCTAACTGGATATATTCAGGCAA
AGGGATCCGACATGGCTCATCACATCATTACAGTAGTCCTTGCTGCGCTG
TTGACCTTACTAGAAGTAGAAGCCGTGGCTGATGTGACGACGCCGGCAGG
ACGACTTGTCGGGCTGGAGTTGGACGTGCTCGGGACGACGGTTCACGCCT
TCCTGGGAATCCCGTTCGCACAGCCGCCAGTCGGAGAACGGCGGTTCAGA
CGGGCCGAACCCATGGAGCCATGGGACGGGATATACAACGCAAGAAGGAG
GCCCAATGCATGCAGCCAGAACAGAGAAGTAGTGAATGATGAATCCAACC
TGTGGGGATTGAATACGCCGAAGAGCGAGGACTGTCTGTACCTGAACGTG
TGGCAGCCAACCCCCGTCCCTACTGGAGCCGCCGTGCTGGTCTGGATTTA
CGGGGGCGCCTTCGAGTGGGGATCCTCGTCAATTCCCGCATACGACGGAA
GGTACCTAGCGGCCACAGAAGGAGTTCTCGTGGTGTCCTTCAACTACCGG
GTCAGTGGGCTAGGATTCCTCTACGCCGGCACCGAGGACGCGCCGGGCAA
CGTTGGTCTCACAGACCAGGTCCTGGCGCTGAGGTGGGTTCAGGACAACG
TCGCGGCGTTTGGAGGTGACCCGGCAAGGGTGACTCTATTTGGCGAAAGC
GCCGGTGGAATCAGTATCGGGTACCACCTGATATCTCCCGGCAGCAGGGA
CCTCTTCAGCCGCGCGATACTGCAGAGTGGGACCGCTCTAAATCCCTGGG
GGTACAACTCTGAGGCTGATGCCTACGAGAAAACAGTGATCTTTGCCGAC
CATTTGGGATGTCCAGCAGAGAAAGGTTCAGCCGAAATGCTGGCCTGTCT
CCGGGAAAAGGACGCACAACAACTTGTTGATACTTCTGTCGTGGGATACG
CAGCAATCATTGCTGTTGTGGACGGCAGTTTCCTACCGGAAAGCCCACCA
GTGGCCTATCAGAGTGGAGCGTTCAAAAGCGCAGACCTCCTGCTCGGTTC
TAATGAAGACGAAGGTGCCTTCTTCCTCATTAGCAACCAATATCCTGGTT
TTAGCGAGGACTCGGAAAGCCTGATCACCAAGGAGCAGTTTCTAGAGTGT
ATTCGCTACTATTATCCACCATTAAATGAGTTCGCTGTTGATGCCGTCGC
CTTTCAGTACACAGATTGGGAGCGTCTAGACCAAGATACCATGTACCGCG
ACGCGATGGACGATCTTTACGGTGATAACTCCTTCGTCTGCCCTGACGTC
AACACTGGTCGGGCCCATCTAAGGCATGGAGCAACGCCCTACATGTACCG
GTTTGCCCACCGCCCCTCGAACTCCCCCGAACCGGCCTGGGTGGGAGCGG
TCCACGCCGATGAGGTGCCGTTCGTGTTCGGCCTGCCTCTGGATCCTGTC
TACGGGTTCACCGAGGAGGAGAAAGACCTGGCTCGCAGGATGATGCGGCA
CTGGGCGAACTTTGCCAGAACAGGGAATCCAAACAACAACGACGAGGCTG
TTTGGAGCGCCTTTAACGCGACCGATGGAGGGTACATGGTGCTGGACACG
TCTGAGCCCCGGATGTTGACCGGCCCAAGCACAGAAAACTGTGCTTTCTG
GGACAACTACTTAAAGCCCCTTTGGAACAAGACAGAGGCTTTAATGAATG
ATGTCCCGTGTGCCACCGGTTCAGGAGTGCCACAATACAACCGGCCAGGG
ATCGTGGGGAGGAGTTTGACAGCTTGCGTACTGGCGGTCGTCTTGCACCT
TGTCACTGTGTACTGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000307 | genome | Sc0000307:283449..288944 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96939_cuf3 |
| Biotype | protein_coding |
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