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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96965_cuf1 >transcript:BL96965_cuf1-protein ID=transcript:BL96965_cuf1-protein|Name=transcript:BL96965_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=430bp
DAPAEDCFKLELPGLCCTKWVCSEQEMYASYDQFGIQVNRNADGSTLTVF
VVRQNSHHLASAGEDETPCETARTTALNTNDTLTGGFVPTCSASGGFMPV
QCHGSTGECWCVDGDGQEVAGTRVGAGYSNPDCSDYTVLSCPVMFCTMTC
QHGFTVGNDGCYTCDCKEEPAALGHLFFTIDFPGLGYTSDMANTSSAAFL
GTAEEIENNIKSDLPSSSGCYSVSVTSMSGTIGNVGVLASGAITAEEDEV
TPAHNSLTLSSLTGHVGSLQMGDVDFSDSSCCPSGFIHRNGSGGCYKFDV
NSEFLSWEDSEALCEAAGATLLSIEDEDENAFVHHYVVENILSADHPQYI
HWTSGNDFQQQGHFVWATGGVVNYRRRPGAAVRDYAEKTAMRCIAGGEIV
AAAALDQKRCSFQLYYICERPSLCPARCTP Run BLAST on NCBI mRNA from alignment at Sc0000044:1086263..1094773- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96965_cuf1 ID=transcript:BL96965_cuf1|Name=transcript:BL96965_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=8511bp|location=Sequence derived from alignment at Sc0000044:1086263..1094773- (Branchiostoma lanceolatum)
GACGCCCCGGCCGAGGACTGCTTTAAGCTGGAGCTGCCGGGACTGTGCTG
TACCAAGTGGGTCTGCAGTGAGCAGGAAATGTACGCCTCGTACGACCAGT
TCGGGATACAAGGTAGAACATTGCGTCAAACTACCCTGTCATTGGACCCG
CGACACGTTATCGACACATTGATCTAAAAATGGGAATACCTTGCAAAACG
TAAAATTGTGACTAAAAGACAAAAAATAACACAAAGCGTAAAAAGAATCG
TTGTTTATAGATCAAATTTGTTTAGCGCGGTTTCAAATCGCTTGGTCAGA
TCGAGGTCGCCAACGTGTCGCGGGTCCAGTGAGAGGGGTGACTTTAGCCT
ACACCAGTGCTATGCGAAGATTTTCAGCTATCAAAAGCTTGTTTTGTGTT
ATATACATTTTTATATATATTTATTTTAGCTCTATTTCATCGCGTATCTA
GCAATCTATTCATCTTGATGAGCATATTTTCTGCCTGTTATGAAACGTTT
TGATAAGGCAAAATCAGGCAACCACATTTTATTTGAATTTGTAAATTTAG
AGCACCAAACATGATTCAGTGTTCTGTCATTTCTGTCATATACTGAAGAA
TAAATGGTACCTTTTCGTCCCATTGCACCCTACGAACTTTTTCCTCAGTG
AATCGGAACGCGGATGGATCCACCCTGACTGTGTTTGTGGTGCGGCAAAA
CAGTCACCATCTTGCATCAGCGGGCGAAGGCAAGTAGCGGTTTATGCTAA
ACATTTGATTCAAAACAATGTTACCATCATAACCGTTGAATGTTACATGG
CCATGGCTGTGCTCTTACACTAATGGTTCTGGTGTAAATCGTCAGATCCA
GTGTCCTTATAACAAATGTATATTTAGACATACCAACTTCTACTACAACA
AGTTGCTCATGTAGAGGACAACATTCATTCATGGCAGTTGGTTTTCAAGT
AAAACACGGAATCTGTCTATTTAGTAGCCAAAATAATCGCCCCGCAAACC
TATTGAATGATTTGATTTGATCCTGACCTATATGTGAAATAATACTAGAA
CCACAGCCCTGAACGCGTACGATAGATTTACCGAAGAGTTCGTGTCATTT
TGCTCGGGTTCAGGCGCCTTCACGACCGCCCAGTGCCACGGTACTACCCG
GGGAGTTTATTTCTAGAGTAACACAAAGTATATTTTCCCACCCAGATGAA
ACAGCGTGTGAAACTGCCCGAGTCACGGCCCTGAACACGAACGACACCCT
TACCGGCGGGTTCGTGCCGACGTGCTCGGCGTCAGGCGGCTACATGCCCG
TACAGTGCCACGGTGCTACCCGGGGAGTTTATTTCTAGAGTAACAAACAA
ATTATATTTTCCCACCCAGATGAAACAGCGTGTGAAACTGCCCGAACCAC
GGCCCTGAACACAAACGACACCCTTACCGGCGGGTTTGTGCCGACGTGCT
CGGCGTCAGGCGGCTACATGCCCGTACAGTGCCACGGTACTGCCCGGGGA
GTTTATTTCTAGAATAACGCAAAGTGTATTTTCCTACACAGACGAAACAC
CGTGTGAAACTGCCCGAACCACGGCCCTGAACACGAACGATACCCTTACC
GGCGGGTTCGTGCCGACGTGCTCGGCGTCAGGCGGCTACATACCCGTGCA
GTGCCACGGTGCTACCCGGGGAGTTTATTTCTAGAGTAACACAAAGTGTA
TTTTCCTACACAGATGAAACACCGTGTGAAACTGCCCGAACCACGGCCCT
AAACACGAACGACACCCTTACCGGTGGGTTCGTGCCGACGTGCTCGGCGT
CAGGCGGCTTCATGCCCGTACAGTGCCACGGGAGTACCGGGGAGTGCTGG
TGCGTGGACGGGGATGGACAGGAGGTGGCCGGCACCAGGGTCGGAGCTGG
GTACAGCAACCCTGACTGTTCTGGTACGAACATTCAACAAACAATTACAG
ATGAATGAATGATTTTATTCGTAAGGAACTCGCGATCAAACACGCCCGAA
TTACGTCCTTATTACATGGTCTATACATTACAATCACAATGTACAGATTT
AAAAAGTGTAAAATGAATATAAAGATTTTACGATAACCTCCACAAACGTA
TAAAGATTAGAAGAAAAAGATATTGCAGAAGTAATATATATATATATATA
AGTTTGTGGGGCCAGAGCTAAAATACATAACACTATACTTTGTTGCCGAG
AGACGCTCAAGAATGAAACATTATTTTTGTTTCTAACATTGATGAATACT
AGTGCTACTAAGTTCCGACTAGTACATATTGAACAGCTCACCATTGCTAC
AATGGCAGCTTACTCGACTCCCTAGAGCATTGATTATACTGTCCTTTTTT
ATAAGTGGCATTGATACCAATAAGTTCCCATTAGGATGAATTATTGCTAC
AATGATAGCTGATCAAAAACAAGTTCCATTTCATCAAAAGACATGTTCTA
ACCTACACACGACACCTATGCCTAGACATCATTATGCAGGACACATTTAA
ACTGAATTACGCACCAGTTCTACCAAGGAAAATTAGCATTCTAGACCGAA
CAACTGAACATACTATCAATTACGCATGACGTTCTCCTATCATTGATTGA
TCAAAAGCTGTCACAAAACCGAATTATGTAAATTATAACAAGCGACAAGC
TATGATTTTGCCAATGGAGGCTTTTATCGTTCCTAATTGACTTGATTTAC
CGTTAATTGGGGCTTTCAGGTCATTTCCTGATACAGTAACTAAATTATCA
GTTGCTTCGACAATCATTTCGCCCCATCCATACAGATTCTAAATGACAAC
GATCACTGTGCAGAATATTGAACAGGGATATTCGTTCTGGAGATTTGTAT
ATTGTTCAGAATTACCTGTAACTTTTTTGTCATACGTTTTAAAGGCTTCA
CTTACCTTTATCTAGAACTTTACGTCTAATTTTCACGTCTTCTAATACAT
GTTTTTGAATAAATGCAAACTTAATCCAAGTATAATTTCAACATTCTCTT
ATTATTACTTACGAGACCTTAAAGCTACTGAAAGGCAACCAAAAACACAT
GGAAATTAAGCCTGTGCGAGTACCTACGCAAAAACAACGTAATAAATATA
TATTTTTAAAAACAAGATGAGCTAAGAAGGATAAAGGGTCAACTTTCAGC
ATGGTTTACGATTTTTAAGTCCCTCTTCATGATTACACAGACTTCACAGA
CTACACAGTTCAGTGCTATCTTTAAGCACGGATTACGTTTGCTCTAATCC
ATTCTGCACGAACTGTTCCCAGACTACACCGTTCTGTCGTGCCCTGTGAT
GTTCTGCACGATGACGTGTCAGCACGGGTTCACTGTAGGGAACGATATCT
TAAATCCCTTCACATTGCCTGTTCCCAGACTACACCGTTCTCTCCTGCCC
TGTGATGTTCTGCACGATGACGTGTCAGCACGGGTTCACAGTAGGGAACG
ATATCTTAAACCCCTTCACATTACCTGTTCCCAGACTACACCGTTCTGTC
GTGCCCTGTGATGTTCTGCACGATGACGTGTCAGCACGGGTTCACTGTAG
GGAACGACGGCTGCTACACATGCGACTGCAAAGAGGAACCAGGTCAGCTG
GTCTTCCTTTTTTCAATATCTATTTATTTAAGTTTAAACGTACGTAATGA
ATAAAAATTATATAACATACGTGCAAAACGACAAAGATAATATACTCCCG
GAACAAAGACTTTTGCCTGATGTACGTATTACTTAATATACCAATACCTA
CCTACATTTTGAAAACAACAAATTATTTGAGACTACATTAGATGTAGATT
AAAAACAGTCCATTTTTCAAATATTCAACATTTTAAAGATATTCCTATAT
AAAATTTTGTTTGTTCCCAGCTGCTCTTGGTCATCTGTTCTTCACCATTG
ACTTTCCGGGTCTCGGTTACACCAGCGACATGGCGAACACGTCATCAGCA
GCCTTCCTGGGAACCGCTGAGGAGATAGAGAATAATGTATGACGTCATTA
TTTACCTCATTATCAAAAGATAATGATGTTCATGAAGATCTAGGATAAAT
GTATACAGATTAATAGAATGTCCTTCATTTATGTTTCAACATATTTTTGT
TTCTATTTAACTCGAACTTTCACATTGAGACTTGAATATAAGTCTTGCCA
AGTAAAGTCATTAATTATGATGATGATGATGAGGATGAGGATTATAATGA
CTAATGAAAATGATGATGACGATGACGATGATGAAGATGATGATGATGAT
GATGATGATGATGATGATGATGATGATGATAATGATGATGATGATGACTG
TAATGTAAATGATGATGATGGTGATTGCCCATAGATCAAATCATTGTGAT
GCAGTCATGACAGCATTAGGTAGGAGGCGCCACTAAAAACCTGTTGCTGA
ATTTAAAATGATGCGTTACGAATGCCCTTCCCCAACAGATTAAGAGTGAT
CTACCCTCCTCTAGCGGCTGCTACAGCGTTTCCGTTACATCGATGAGGTA
GGACTCGATCATCTTCGTCTATCATGCATTTCACTATAAAGCAAGAGTTT
TATGAAAGTGATCCAAAACAAATACCAGTTGATGAAGAAGTAAAACCTCA
GGTGTTATTATTAATACTAAATAGCATGATGTCACTCTTCTTGAAACTTG
TGGACAAAAGTTGAAAACATGTTGATCATAACGGTACTAGTGTAAAGATA
ACCAAATTGTTGATATTTCTCGGACTCAACCATAATCTGGACGTCAATGT
GACTGTGAACAAAGTGATAAATGTGGCAAAATTTGTTGTTTACAAATCAT
GGATAAAACATAAGGACAGTGACAGAGACCTGATGAATGACAATTTGTTG
AACACTTTCCTGTTCGACTCTGTAATGTTCAACAGTCAGCACCCTTAGCC
CTGTACATTGTTGTTTATTTACATTTTATATTGTGTGTATGACTGTCCAC
ATGTTGTACATACGGTGTTATTAATAAAGGTTTTTAAAAAAATTAGAAAA
AAAAAATGTTTAAAAAAATGATGTCGCTCTTTTCGGAATGGGACTAAGTC
TATGGCTCACATGCACACTGCTATGTTATGGCGCCTGTCATTTTGTTGCA
AAAAGAAATGGAAACTTCTTCTAGAATCCGAATTCAGCCTTCTATAAAAC
ATTCTTGACACAGTATACTGTTACCAATATACTGTTATAGAGCGTTAGCA
TGTGCATGATTCTATATAATATTTCTACTGTTAGTCATAGATTAGATCAG
TTCTCTGTATTTGTGAATTATTAGCAATTCAACTCTCATGTGTTGCCATA
CATTGTACCAGTTACAATTGGCGTGCAATAAAATTCTTCTTCTTCTTCAA
ATATAACTGAATTCGTACATGTGAACAATTTTCGCTGTAATTTGTGGTTT
GTTCTGGTAGTGGAACCATCGGAAACGTTGGCGTTCTGGCTTCCGGTGCG
ATCACCGCCGAGGAGGACGAGGTGACGCCTGCGCACAACAGTCTGACCCT
GTCGTCTCTCACGGGTCACGTGGGTAGCCTACAGATGGGAGATGTGGGTG
AGTACAGGGGAACTTCTCATAGCTTGTAACCACCAAATTAATCAAGAAAA
TAATTTCTATAACTATTTTGTCTCCGTTACTGTACATCATTATAGGTTCG
ATCAGACTCAAACATTGATAATATCAGATTAGTCGATAAACCAGCAATGG
ATGGATGAATGAATAAATGAATTTATAGTGTCAAAGATGGATGTTTGGAT
GACTGAAGGAATGAAGTAAGGAAAGAAGGACTGATACGTGAGACCTAATA
TAGCGAGGACAACAGTTATCCAGAATGCCAGGGAATTGTTATACACAGTA
TAAAGACATTGCTGTTCTCTTTATTCCAGACTTCTCCGACTCCAGCTGCT
GTCCTAGTGGCTTCATCCATCGTAACGGGTCCGGCGGGTGCTACAAGTTC
GATGTGGTAGGCTGCAATCTTCCGGATAAAAGCTACAAATTTAGATACGC
CCCCAGTATATTGTTTTTACCCAGTGTGTATCACGGTATAGCCTGAGGTG
TTTGTATTGTTACATTTATGGAAATGGAGGTATAGTTTTCGGTGTGTCTG
TGTCTGTTTCTTTTCGGATATTTGTTAGCATAAGTCTGATGGAACCTCTG
GATGGATTGCGAATTCGGGCCTCCTGGTGGCCGACCTTGGTACTGCACCA
GGACTTTTGCATCATTTACCCCGCATGGGAAACCTAGCGCACCCTCGTCT
TAAGCTTGTATGAGCCAACAAAACGATTTGTCATCCCATTAGCGTTTGTA
TATGCCTTAGAACTTCCACTGATGATGATGATTGTGATACCTGTTATATT
ACACGTTATAATACTGCAACACCTCCTGTAGAATAGCGAGTTCCTGAGCT
GGGAAGACTCCGAGGCGCTGTGCGAGGCGGCCGGAGCGACCCTCCTCAGC
ATCGAGGATGAGGATGAGAACGCTTTCGTACATCACTACGTGGTGGAGAA
CATCCTGTCAGCAGGTGGGCACTGATGATGATAAGTCCTGAAAGTTAAGA
TCGTTTGTTAAAGGAGATATTTTGTTTACTTTCAATTCCTATGTACTGTG
GTAGTGATATCATCATCACGTAGTGAAGAGCATCATTTTAGTAGGTGAGC
ACTGATAATGATAAGTCCTGGAAGTTTAGATCAGCTGTTGTAGGGCATAT
TGTTTTACATTTGTAAGTTGTAGTCCTACATCATCATCAAATATAAGCCT
ACGTATTGAAAAGACGACATCATTACGTGGTAGAGAACATCCTGTCTGCA
GGTGAGCACTGATGACGATAAGTCCTGGAAGTTAAGATCGTTTGTGAAAG
AAAATGTTTTCTTTGCACTCAAGTCCTATGTACTGATCAAGGTAGTAATA
TAATCATCACGTAGTAAATAAACATCATGTTTGCAGGTGGGCACTGGAAG
TTTAGATCGTCTGTAGGGCATATAGTTTTCACACTTGTAGTCCTACATCA
TCATCAAATATAAACCTACATATGAGGCGATTTATGCATGATAATAATGG
GGCATTCTAAAGACCATCCTGACTATTGGGAAATGAATGAAAGATCATTT
TCATTATTATTGCAATGAGAATATGCGCTTCAATGCCGATTCTACATGTT
TATACACGCGCATGAAATACTTGATCTTGTAGGGCTTTCCTAAGCTGAAA
TGTGGCTTATTCAGAGAACCGTGGATTGGTTGACACTAAAAGTTATGGGT
CCAGGTAGATTAGATCAAGTTCTATTAATGAATTCTCAGTTCTGCACTTA
ACTGTTCTTTATACTGTGATAAGTAGAGCACTCAATGTGAATATGCAAGC
TCCAAAAGCACAAAAAGATTGGTATAATAGTGTCCAAGTAAGCTAGAATA
ATGCCTTATTATCGGTACAGATTCTATGTAGGGACATACATGTAGACACG
TGTTTCGTTTTGGAAAGACTTCTCTCACAAAACAAGGCTGTTTTCTTTAC
TGTTCGGCTTGAAAGAATGTATGTAGGGACATACATGTAGACACGTGTTT
CATTTTGGAAAGACTTCTCTCACAAAACAAGGCTGTTTTCTTTACTGTTC
GGCTTGAAAGAATGTTTGTTTGCTAAACAGACCACCCCCAGTACATCCAC
TGGACCAGCGGTAACGATTTCCAGCAGCAGGGACACTTCGTGTGGGCGAC
CGGGGGAGTGGTCAATTACCGCCGCCGGCCCGGAGCAGCCGTCCGGGACT
ACGCCGAGAAAACAGCCATGCGCTGCATCGCAGGTAAGGTTGCTACAGTA
TGCTCATAATAATCTGAGTATTCTGGCCCGGACTAATTCAACTCCCTTCT
CTAAGCGCCTCTCTGTCTTTCAAGACGGTATATATTGAGTCGTGTACTAG
TACCCTGATGGTCAGATGCGTCATTGCATACTCCTGGATTTACAATATGT
CATGCATTACTTATGATAATAACCACGTGACTTTGGTAAACCTAGGTGAT
AGGTCAAAGGTGGTTGAAAGTCGGTATCGCCCACCGCCCCTCTTATACGC
CAATAAAGTCACATGTTGTGAGTGTGAGGGCACTTATAAAAAAGAAGGTC
AAGATCAATCAAAAAGTTATTCATCTGACTTGATTTGCCTATCAAAGCCG
ATCATCATCACAATTTCGAGCGAGTCGCTCGGGCTACGTCAACTATTACT
TCTTCAAGAACTCGGAATTGGAAGGAGATATCGTATCCGTAGCTTCCCTG
TACAAGAAGTGATATACATGTACATCGATGATATACATCTCCGATGTATA
TATCTGATATACTTCTCAGAAGTGATCTACCTATCTGATATGCAACTCTG
TTTGATGTCTCCCATCAGGAGGAGAAATCGTGGCGGCGGCTGCCCTGGAC
CAGAAGCGGTGCAGTTTCCAGCTGTACTACATCTGTGAGAGGCCGTCTCT
CTGTCCCGCCCGCTGTACCCCGTGAGGTGACGTCACAGCAGGGGCATATC
CGCAACTAGAG Coding sequence (CDS) from alignment at Sc0000044:1086263..1094773- >transcript:BL96965_cuf1 ID=transcript:BL96965_cuf1|Name=transcript:BL96965_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1293bp|location=Sequence derived from alignment at Sc0000044:1086263..1094773- (Branchiostoma lanceolatum)
GACGCCCCGGCCGAGGACTGCTTTAAGCTGGAGCTGCCGGGACTGTGCTG
TACCAAGTGGGTCTGCAGTGAGCAGGAAATGTACGCCTCGTACGACCAGT
TCGGGATACAAGTGAATCGGAACGCGGATGGATCCACCCTGACTGTGTTT
GTGGTGCGGCAAAACAGTCACCATCTTGCATCAGCGGGCGAAGACGAAAC
ACCGTGTGAAACTGCCCGAACCACGGCCCTGAACACGAACGATACCCTTA
CCGGCGGGTTCGTGCCGACGTGCTCGGCGTCAGGCGGCTTCATGCCCGTA
CAGTGCCACGGGAGTACCGGGGAGTGCTGGTGCGTGGACGGGGATGGACA
GGAGGTGGCCGGCACCAGGGTCGGAGCTGGGTACAGCAACCCTGACTGTT
CTGACTACACCGTTCTGTCGTGCCCTGTGATGTTCTGCACGATGACGTGT
CAGCACGGGTTCACTGTAGGGAACGATGGCTGCTACACATGCGACTGCAA
AGAGGAACCAGCTGCTCTTGGTCATCTGTTCTTCACCATTGACTTTCCGG
GTCTCGGTTACACCAGCGACATGGCGAACACGTCATCAGCAGCCTTCCTG
GGAACCGCTGAGGAGATAGAGAATAATATTAAGAGTGATCTACCCTCCTC
TAGCGGCTGCTACAGCGTTTCCGTTACATCGATGAGTGGAACCATCGGAA
ACGTTGGCGTTCTGGCTTCCGGTGCGATCACCGCCGAGGAGGACGAGGTG
ACGCCTGCGCACAACAGTCTGACCCTGTCGTCTCTCACGGGTCACGTGGG
TAGCCTACAGATGGGAGATGTGGACTTCTCCGACTCCAGCTGCTGTCCTA
GTGGCTTCATCCATCGTAACGGGTCCGGCGGGTGCTACAAGTTCGATGTG
AATAGCGAGTTCCTGAGCTGGGAAGACTCCGAGGCGCTGTGCGAGGCGGC
CGGAGCGACCCTCCTCAGCATCGAGGATGAGGATGAGAACGCTTTCGTAC
ATCACTACGTGGTGGAGAACATCCTGTCAGCAGACCACCCCCAGTACATC
CACTGGACCAGCGGTAACGATTTCCAGCAGCAGGGACACTTCGTGTGGGC
GACCGGGGGAGTGGTCAATTACCGCCGCCGGCCCGGAGCAGCCGTCCGGG
ACTACGCCGAGAAAACAGCCATGCGCTGCATCGCAGGAGGAGAAATCGTG
GCGGCGGCTGCCCTGGACCAGAAGCGGTGCAGTTTCCAGCTGTACTACAT
CTGTGAGAGGCCGTCTCTCTGTCCCGCCCGCTGTACCCCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000044 | genome | Sc0000044:1086263..1094773 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96965_cuf1 |
| Biotype | protein_coding |
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