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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96967_cuf4 >transcript:BL96967_cuf4-protein ID=transcript:BL96967_cuf4-protein|Name=transcript:BL96967_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=268bp
SSWSYCPCNAIPNLTKRARWRGCIDSDHLGILYVDDFNCGEGATTQSKLC
LQEDIPACAKPVSAQKLGYNASYYQWSSWGEWTPCPDLCLHDPTVITSRY
RVCTYLYNGQVAHQLLCGIDFYQSEACPKVPCNGTYVPEEFGRTPCFEEG
AGTVFYKGCAMVCTCADNQHFNCEDMCSNLPSEMFQYDQNGCRYIMKQPF
PNMPYTPDTCCPHLECDVAFAAGNCPDLDCETTCTRGFKVERGYDGCLRC
QCLNAQTIAEEAYGAAID Run BLAST on NCBI mRNA from alignment at Sc0000044:1099928..1104598- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96967_cuf4 ID=transcript:BL96967_cuf4|Name=transcript:BL96967_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4671bp|location=Sequence derived from alignment at Sc0000044:1099928..1104598- (Branchiostoma lanceolatum)
GGAGTAGCTGGAGCTACTGCCCGTGTAACGCCATCCCCAACCTGACCAAG
CGGGCGCGCTGGAGGGGCTGTATTGACAGCGACCACCTCGGAATCCTGTA
CGTGGACGACTTCAACTGTGGGGAGGGAGCGACCACTCAGTCGAAACTGT
GTCTGCAGGAGGACATCCCGGCATGTAAGAGCGTTTCCGCTTTTTGATAA
ACCGATTCATTTATTTGCTCATTGATTGATCCATCCATTCGTCGTTTTGT
TCGTTCTTTGATTCGTTCGTTTGTTCATTTATCAATCTATTCTTCCATCC
ATTCATGCATACATTCAAAGAGAAATATACCCGTAGTAACATATGACCAT
GAGTTTCATAGAGAAGTATACTTAGGTCTTTATCGACAACGATGGACAAA
CATCATCATACGTTAACGTATGTCTATGAGATCAGCTACCCGAGGGTATG
GCGAGTCCTTTACATCAAAGATGTCTTAACCCTTAAGCTGCCAGGTTTTT
TGGCCAAGTTTAGCCAAGTAAAAATAAGAAATGTTTGACCCCCGACCTCC
CTCACGAAACCCGCGAAACAGCCGGCGGCCCTAACTCCCCTAACTTCCGG
GCTTCGCGCGCTATGCGCTCTCAAAGCTGTTTTCTTCTGGGGAATACCCT
ATCCCGGTTATAACCGGGACCAGCACATAAGGCATATTTCTGTATCCCTG
TTTAAGGTAAACCGGGACTGGCAGCTTAAGGGTTTTAAGAGGCAGTAGAT
ATACTTTTCATTTCTAATAATTTTCAGGCAAATGCAGTAAACATGGCTAG
ACCATCCTCCCGATTTTCTGTTGCAAGTAGAAGATTCCATCATTTCATTT
TCATCTCTCTTTAGGTGCCAAACCTGTATCTGCCCAAAAGTTGGGATACA
ACGCATGTGAGTATTCAGTAATTTTTTAATCATTTCACAAAGTGACTCGT
ATCTTAAAATGTATATTTTGACAGAAACCATCGGTTGAAGGAAGCCCTTG
GTTGTGTACATACTCTTTTAGATTTCTATTCAGCGAATCACAAACCTGCT
TTAAAAACGTTTTGCAAAGGGATGCGTGAAACTTACAACGCGTTTTGGCA
GGAGTCTTTTTATTTTTACTTTAAAGCTTAATATGTAGTATAGCCGTACA
TGTATTTTTACATATAATGTGACGCATATTTATTCCATGTGTTTACAAAT
AAATAAACCATTTGAATTCCTATGAAAATTTGAAGCGGACAAAGATGTTC
GCGATGGTTTTAAGTCCGCGACGTCCGTGAACACCGCGAACATAAAACCA
CCGCGAACATTTCTGCATTTACAGTAGCTTAGAAGCCGAACCTAGTTTAA
TCACGTTCCTTTCTGATTACTTTGTTTCGAAGCTTACTACCAGTGGAGCT
CGTGGGGCGAGTGGACGCCGTGCCCGGACCTTTGTCTGCACGACCCTACC
GTCATCACCTCCCGCTACCGGGTCTGCACTTATCTGTACAACGGGCAGGT
GGCGCACCAGCTGCTCTGTGGGATAGACTTCTACCAGAGCGAAGCGTGCC
CGAAGGTCCCATGTAAGCGTTTAACTTGTCGATCGTATAAACTCGCTCAC
CATTCACAGATATCGAATTCAGTCGATTGTTTACTGATTTTCTTCGCTTT
TTCGGCGTTCACAACTTTGAACGGCTGCCATTGCTGCCATTGTCCTGATG
CAGATGTTGGTGTTTCAATCCTGTTTTGTACGAGAAAAAGAACATTAACA
ACGAAAACGATTATTTCCAAGTACTAAAAAACATACGGCTAGGGCTGTTC
TGCGTGTTTTAGCTAGTTATTAAAGGTCTTGGCATTCTATTGTAACACAG
GCTTGCTTAACATTCGTCCTTGCTGCTTTTTACTTTGAAATTGATTGTGC
TTTGTTGCCACAGCTTCCCTTTGCTTCTACATTTACTGTTGCGATAGCTT
TTGTAGCTTTCGCGCTGCCGTATCTTATGCGCTGCTGCTTGCTCCTTTGT
GTTACTGTTATCCTTTATGTCCTTGCTGCTTTTGCCACCTTTGCTTTTGC
TGCTGCACCCAATGCTGTTGCTGCTTCTGCTGCTGGTTGTCATCGCCGCC
ATGTCCCGATACACAGATCCCGAGTGTATGTATATCCATAGGTTGCAAAT
ATACCTACTAGTAGCTTTAAGAATGCTGCTTCAGTCATTGTTATGGTAAT
GCATTTGCAGTTTTTTTTTGTTATTATCCAATTTCATGAACCACTCTCTG
TATGACGTATTTCTTGCCTTCCAGGTAACGGCACTTATGTTCCTGAGGAA
TTCGGTAGGACATATTACAGTTACCTAGTGTTCTAGCTTGGTTTTGGTTT
GGTTTGTGGATGATATTAAACGGATTTAGATTATAGTCTTTTAGGCGATG
TGCAAACAAACACAAAACGCTTTTCTAAGTTAACTTTCATTTCTTTTTTT
ATTGTGAAAGGTAATGATTTCTTTGCCTAATACCTACGTCTGAAACACGA
CTAGATCAAGTTTACATGGTCAACCAGTCCTGGCTAGATTCTTATTGGGT
GCGCTATTTTACGCAACTTCATACAAAAATCATTAATGAAATCATCATTT
GGTCAAGCTTGTTGCATGAATATTTTTTATTGACACTAAGTGTCCACCAT
GTCTCCTTCCTCCAGGTCGGACACCATGTTTTGAGGAAGGTGCCGGGACC
GTCTTCTACAAGGGCTGTGCCATGGTCTGCACATGCGCAGACAATCAACA
CTTCAACTGCGAGGACATGTGAGAATCGGAGTCTACACTGGAAAATAATA
ATTAGAGTTAGAAGAAAAGAAAATCCATAAATTTGAATCTTAAGAAAATA
ATTGATTTCTTTCCTTCTTACTCTAGTCATGTAATGTTTCATTGTAACCA
AATGGAACACAATAGGAACACATAGACCCACCTAATTCTTTTCCAAATCA
TTGTTAATTCATTCAAGTTCATTGTGACTTAAGTTCGCGGTAGGGCGTCA
CAGAGGCGCTGTGTTAATGTTTAAAGTTCGTTGTTGAAACGCATGCTATA
CATGACATATCACAGTTACATTCACTAACATCAAAGCACCGGGAATGTAT
ACTGTACTTTTTCAAGTACATGGCTGGTAGAGACTGGTGTAGATGGAAAC
GTGAGACAACTTCAATTGGAAATAATACTATGACACTCAGTTTGCTTCTC
AGATGTCAATACCATTAAAGAAGTGGTTTCAATACTTACGTTCTCATGTC
CCCAGGTATACCAACCTCAAAGAAAGAAAAAATAGAGTTGGGTCTATTTG
GACCTTATACGGTCTTCTTCTTCTTTCGATTGAGGCGGCCGCCTTCATCG
TGATGAAGATTTTGCTACCTTTCTACTACTGGAAGTCTACTGCAAGTTGG
GAGTGAGGATGTGAGATGTAACAAACCAGGGGTTGGGAATGGGAAGGGTG
GAGAGTTAAACCTGTTATTTAAAACTGTCAAGAGTTGAACTGAGGGCGAC
CGAGGCTGGAAGGCTATTCCAGTCCTCGGTCGTCCTGGGGAAGAGGGACT
GTCTTCTGTACTCGGTCAGATTAGGTGAAAAACGTATCGGTCGAATGAAG
ATTGATGAACAACTGCTTGGATTATCCATCAGGTGTTCCAACCTGCCGTC
GGAGATGTTCCAGTACGATCAGAACGGCTGCAGGTACATCATGAAGCAGC
CCTTCCCCAACATGCCGTACACGCCGGACACCTGCTGTCCGCACCTGGAG
TGTGACGTGGCGTTCGCGGGTTGGTAATTTTTGCCCTCAAGAGAGGAAGA
CGTAACTTTGAAACTGCCCGCAATCTTGGTGGGTTACATAGCCGTGCTGC
CCACACATAGAGTATAAGCACAGTTTGTCGCGTCACTCATGGTCGCGTCA
AGTCTACGACAATAGAAAAGCTACTCAAACAACTGGATACTATTAGATTG
TTTGTTTGTTTGTTTGTTTGTTTGTAAATCTATGTAGTAGCTTTGTATTG
AGCACATCATTACTTTTAACGATGTATAGCACCGCTCTACTTTACATTTC
TCTAATGGTAATCACCCAATAGTTATCTTAATGACCAAGGCATTTAACTT
TAAAAACATGGAATTTGTTGGTTCCCCGCAGCCGGAAACTGCCCTGACCT
TGACTGTGAGACGACGTGTACCCGCGGGTTCAAAGTTGAGCGGGGGTACG
ACGGCTGTCTGCGCTGTCAGTGTCTGAATGCACAAACCATCGCCGAGGGT
CAGTACCTGTCAAGTTACTACCGTTACCTCAGTCAAGACAGTTATGGTTT
AGTTTTTCCATTTGTTTATAGGATTGTGGACATCATATCTGTAGAAGCTG
TGAATGCATCCGTATGATATTTAGTGTTCAAAAAGCTGTCAACAAAATAA
ATAACTTGAATATGGGCCCCGGATATCAAAATAAAACCTTTTTTTTTAGA
TGATTTTGGAAGGTTCATCATCTGCTAAACAGAATATATTTTGCAACATA
CATTGGATCCAGGCTCAGCAATCGATTTCTTAAAGACTCCTCGGCCTGTC
TTTCCCGTGCCTTTTAGTTTAAATATTATCTATGTACATCCTTTCTTTAG
ATAGGTGGCGCTCTTATCTGATGTCATGCTTTTTGTTTATCCCCAGAGGC
GTACGGAGCGGCCATTGACCA Coding sequence (CDS) from alignment at Sc0000044:1099928..1104598- >transcript:BL96967_cuf4 ID=transcript:BL96967_cuf4|Name=transcript:BL96967_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=804bp|location=Sequence derived from alignment at Sc0000044:1099928..1104598- (Branchiostoma lanceolatum)
AGTAGCTGGAGCTACTGCCCGTGTAACGCCATCCCCAACCTGACCAAGCG
GGCGCGCTGGAGGGGCTGTATTGACAGCGACCACCTCGGAATCCTGTACG
TGGACGACTTCAACTGTGGGGAGGGAGCGACCACTCAGTCGAAACTGTGT
CTGCAGGAGGACATCCCGGCATGTGCCAAACCTGTATCTGCCCAAAAGTT
GGGATACAACGCATCTTACTACCAGTGGAGCTCGTGGGGCGAGTGGACGC
CGTGCCCGGACCTTTGTCTGCACGACCCTACCGTCATCACCTCCCGCTAC
CGGGTCTGCACTTATCTGTACAACGGGCAGGTGGCGCACCAGCTGCTCTG
TGGGATAGACTTCTACCAGAGCGAAGCGTGCCCGAAGGTCCCATGTAACG
GCACTTATGTTCCTGAGGAATTCGGTCGGACACCATGTTTTGAGGAAGGT
GCCGGGACCGTCTTCTACAAGGGCTGTGCCATGGTCTGCACATGCGCAGA
CAATCAACACTTCAACTGCGAGGACATGTGTTCCAACCTGCCGTCGGAGA
TGTTCCAGTACGATCAGAACGGCTGCAGGTACATCATGAAGCAGCCCTTC
CCCAACATGCCGTACACGCCGGACACCTGCTGTCCGCACCTGGAGTGTGA
CGTGGCGTTCGCGGCCGGAAACTGCCCTGACCTTGACTGTGAGACGACGT
GTACCCGCGGGTTCAAAGTTGAGCGGGGGTACGACGGCTGTCTGCGCTGT
CAGTGTCTGAATGCACAAACCATCGCCGAGGAGGCGTACGGAGCGGCCAT
TGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1099928..1104598 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96967_cuf4 |
| Biotype | protein_coding |
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