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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96972_cuf8 >transcript:BL96972_cuf8-protein ID=transcript:BL96972_cuf8-protein|Name=transcript:BL96972_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=542bp
TFDHALDFTHCLRLLVRGYNKAGLSSLSARDVINCDTDNPADFRTPLVID
AVGEYEQLSPNHTSDIYLETNQRWPLPDKEFTPASAKLSAVWPTLRHGMY
NWKVISDNSIRHWAYVTPQHALRYSDYECDSQEVLSCGTTKDNFVNVPGL
GLRHGRRYHLCVHADQTILQFETFDQTLAEVDTCSNGVTVDLTPPSPGQV
WVNRRDQDFQTSTSELYVFWDSFADVEDHGMSSHRSGIQKYELAIGSSRG
GVDIKDFKEQGVTNMAAMHHLHLQQGHTYYVTIRATDYVGFSVTSVSQGV
TIDVTVPMVTEAKIDVGGRYHLSTSSVTARWDGVFLDPESGISHYEWSVG
SGPGHADIMPFTRTESEAAVSDPALDLQLQEGHVYYVSVKAYNGAGLSVI
AVSWPTVVESSPPEPGVVYDGLPSPGQQDADFQTELDTLHASWAGFRDAH
TAIIGYKWSVGTCPGCDDVMEAEHVGLLTDVSASHLGLVPGKKYYVTVTA
CNAADLCTSVCSDGVIIDNSPPAPGVVYDGVGDMDSRFQASR Run BLAST on NCBI mRNA from alignment at Sc0000692:16762..22849- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96972_cuf8 ID=transcript:BL96972_cuf8|Name=transcript:BL96972_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=6088bp|location=Sequence derived from alignment at Sc0000692:16762..22849- (Branchiostoma lanceolatum)
GACGTTTGACCACGCCCTGGACTTCACCCACTGCCTGCGGCTTCTGGTTC
GAGGCTATAACAAGGCGGGGCTGTCTTCCCTGTCTGCCCGGGATGTGATC
AACTGTGACACCGACAATCCCGCGGACTTCAGGACTCCTCTCGTCATCGA
TGCGGTGGGCGAGTATGAACAGCTTTCTCCCAACCATACAAGGTATGTCA
ATTGAAAAACAAACATGTAATTAAACTACCATAATGTTATTTGAATCAAT
GTCGGCGTGCGCGCGCATCACTGTTCTGTAACTTCTGTAGCTGGATTGGT
TCATGTTCAGCAGGAATTCTTTTGGTGACGCGCTGGAAGCTGCCTGAGCC
CATCGGTAATGCGTTGAGCATGCTCAAACTGCAGCATCGCAACACTTCTC
AATAACAACGGGTGGCAGCTGCTGCACCTCCGCAATTACACGCTCTCACA
ACTTACAATAAAGAGTACGATGACGATGTCGACCCGCAACACAACAAATT
CAACCTTCTACCTAACACCATAAATGCTGCCAGTAGGACTCCAGGTGCTG
GATACGTGTATAAATAGCCATTGTATTGGTGTCAAATGTAAAATTGTGCT
TTCCATTTTGAAACAGCCATTATGAGATAGTCGTGTCCATTCGTCTACAG
TGACATATACCTAGAGACCAACCAAAGATGGCCACTGCCTGATAAAGAGT
TCACCCCGGCTTCTGCCAAACTGTCAGCCGTCTGGCCAACATTACGTCAT
GGTATGTACAACTGGAAGGTCATCTCCGACAACTCCATACGTCACTGGGC
CTACGTAACTCCCCAGCATGCTCTGCGTTACTCCGACTATGAGTGTGACA
GCCAAGAGGTACTCTCCTGCGGCACAACAAAGGTAACGTATCATCATGGT
CGAGAGACTTCAACTCACATATTTACCGGTCGACGCAACCTTATTTGTTT
GTTTGTCTGCATGTTTGTTTCTTTGGTCCGTGTCTAGTGGCACATAAGGC
AGCTCGTCATTCCTGCTGTTTCTGTAGTATGTGGGAGATATGCATGATTT
ATCAATGCAATTCACACAAAGAACCCTACATGATCTTGTCACTTATGATC
AAAATGATGTTGGTAAGAATATATCGATACTTTGTGACACATAGCCTTTT
GTCGGCTTCAAGGCCCATATGACATAAATGATATAATGAGAAGCCTCGGT
CTCCTTCAACAGAAGTTTACCTTTATCTTTGCTTAAGGATAATTTCGTGA
ACGTACCGGGTCTCGGACTCCGCCACGGTCGGCGGTACCACCTCTGTGTC
CACGCCGACCAGACCATCCTGCAGTTTGAGACGTTTGACCAGACCCTGGC
TGAAGTAGACACCTGTTCTAACGGAGTCACCGTGGACCTGACGCCGCCTT
CACCTGGACAGGTGTGGGTCAACAGGAGGGACCAGGATTTCCAGGTACAC
CTGTACAACTTCACTTAATCTATTTAGCCAGGAGGGGTGCACTTAGGTCA
TCTGACCTGCTTTGCAAAATGTCATTTCAATTCAATTCAGTAAATGTTTG
GAAGTATCAAGTTCAACTTGATACTTATCAATGTAAGATCAGATCAGCTT
GGAGCATTTTGCAACTATAACGGTACTCCCAATTTTGTTGTCACGATAAC
CTTTGCAAGTTATCCAAAACAGTAAGCCTGTCTGTATCTTGTGTTTTCAG
ATAAGTTGAGTAATGTCTGCGTGTTATACGCATTATTACTGTACTTGATT
ATTTCTATCTTTACCGCTACTTTCAGACCTCGACGTCTGAACTTTACGTT
TTCTGGGACTCTTTTGCCGATGTGGAGGATCATGGGATGTCATCACACCA
CAGCGACANTTGTGTTTTCAGACAAGTTGAGTTATGTCTGCGTGTTATAC
GCATTATTACTGTACTTGATTATTTCTATCTTTACCGCTACTTTCAGACC
TCGACGTCTGAACTGTACGTTTTCTGGGACTCTTTTGCTGACGTGGAGGA
TCATGGGATGTCATCACACCGCAGCGGCATACAGAAATACGAACTGGCAA
TAGGTGAGTATGCTTTCTGAGCTACGTCACGTGTATAAACCATTTCCACA
TGACGTCACAACCGCGAGAATATGTTTTCAACCTAAAATAGTTGAAGCTA
AAAGTTTTCTGGTATATAACAAGCAATATATTTCATGGCTACCCAATGTC
AAAAAGATGGAATGTTCATTGGGCTACTTAAAAACATAAAACTTTAAATC
ATCTGCAGGATCGTCGCGCGGTGGTGTCGACATCAAGGATTTTAAAGAAC
AGGGTGTCACAAACATGGCCGCCATGCACCACCTTCATCTGCAACAAGGG
CACACGTATTACGTCACTATCCGGGGTAAATAACATCGAAAAAATCATTT
CCGTAGTTCAGAAGAAAATCTACTTGGCATCGAACTTTTTGATATCTTTT
ACGGTGTTTTTATAAGCTGACCTGATCATTGGGAAATCATTTGACAGTAA
CCATTCCACCCTAAACCCCCAACCCCAGCAACCGACTACGTTGGGTTCTC
TGTGACGAGTGTATCACAAGGTGTGACCATTGACGTCACTGTTCCCATGG
TAACGGAAGCAAAGATTGACGTCGGCGGCCGTTATCATCTATCTACGTCA
TCAGTGACGGCGAGATGGGATGGTGTTTTCCTGGACCCTGAGAGCGGTAA
GACACAATAATCATACTTGTGTTGTAGTGAGAAATTCACTATGTATTGAA
CTGACTATAGGCATCATTTTGAATNGGACTGTCGGTCATCGCGGTGTCAT
GGCCGACTGTGGTGGACAGCTCGCCGCCTGAACCCGGGGTCGTCTATGAC
GGGCTTCCATCACCGGGCCAACAAGATGCAGACTTTCAGGTATTTTGAAC
AAAGAAGAAAGTACGTGTATTTCATGAACAAAACACACGAAAACACAATG
GCAATTCACATCCTTTGGTTAGATTTCATTCATGACATGGCTTTTGTTTC
CCGGTAGACTGAGTTGGACACGCTGCATGCGAGCTGNAGATGCAGTAGCT
TTGCTGTATTGTGTTACATATAGACCCTATACATGTGCATGTAGACCCTA
TACTGGATCTACCTGATTTGAATTTTACATATGTGGTAACATCAGGTATA
TCTCACTACGAGTGGAGTGTTGGGTCCGGGCCGGGCCATGCTGACATCAT
GCCGTTCACCCGGACGGAGTCTGAAGCAGCCGTGTCAGACCCAGCACTGG
ATCTACAGCTGCAGGAGGGACATGTCTACTATGTGTCTGTCAAGGTACGT
CTGTGTATCTATTAAAACACAAAACCTATAGTTTAATCAAAATTAGCAAA
TCGTACTTCTAAAGAGACGAGTGGAAGGAAGTCAACTCTTTGTTACGCAA
AGTGTTTCAAATATCAAACGACACTTTCTGCTAATGTCAACAATCCAAAA
AGATTCACGATTCCCTCAATATTCAAATTTCCTAAAGCTGTTTCATCGTT
GTGCAATATGACCTCCAGGCATATAACGGAGCGGGACTGTCGGTCATCGC
GGTGTCATGGCCGACTGTGGTGGAGAGCTCGCCGCCTGAACCCGGGGTCG
TCTATGACGGGCTTCCATCACCGGGCCAACAAGATGCAGACTTTCAGGTA
TTTTGAACAAAGAAGAAAGTACGTGTATTTCATGAACAAAACACACGAAA
ACACAATGGCAATTCACATCCTTTGGTTAGATTTCATTCATGACATGGCT
TTTGTTTCCCGGTAGACTGAGTTGGACACGCTGCATGCGAGCTGGGCAGG
ATTCCGTGATGCTCACACCGCCATTATAGGGTACAAGTGGAGTGTGGGGA
CATGTCCCGGATGTGATGACGTCATGGAAGCTGAACATGTTGGCTTACTC
ACTGGTAAAACATCAAAATGCTAAAGATGAAAATCATCTGTGCCACACAA
TTTCAATGATATTACTAATTTGATACAGAGGTTCTTAACTGATGTACTTT
TGCGACGTGGATAGAGGCGTTTAGAGAACCTACTATAACCATGCACAACC
ACAGGTACTATTATCATAAACAATCCGAAAGGGACTCAACCGGATACGAT
TGACTTTGAAAATGGTCAGACCTTTCTAAGTGCATCCACTACCTTTCGCC
AGAGACCATCATTAAATACCTTATCACCTAGATGTATAACCTTCATCGAC
CTAATACAATTCCGGATATTTTATTGTAAACTGCAGACGTTTCTGCGAGT
CATCTCGGTCTTGTCCCTGGAAAGAAGTATTACGTCACAGTAACAGCCTG
TAACGCAGCAGACCTCTGTACGTCTGTCTGCTCTGATGGCGTCATCATAG
ACAACTCCCCGCCGGCCCCGGGGGTGGTGTATGACGGGGTGGGTGATATG
GACAGCCGCTTCCAAGCATCAAGGTAGGTTTGTTTGTTTGTTTGTTTGTT
TGTTTGTTTGTTTGTTTGTTTATCTGTTTTTATTGCATACCCGTTAAACC
GCTTCCTGGAGAAACAGACTTGGTCTACACTTAAGAGTACAAGCTTCACA
TCCCGACAGTTTTATTTGATTCACCCACACCTGGAAGGACCCCTACTCTT
TTTCAATTAGTGCACGAGGTGAGACTTTCCTTAAACACGGGACCTCGCTT
TAAAGTCTTGCACGAAAGACGTCCCTAGCGGCAGAGCCAGAGTCAAGTGA
GGAACTTGGTGTTAAGTGCCATCGGGACCTTTCATGGATTTGGACTAAAT
ACCTCCGTGTTCTCATTCAACAATTAACCCTGACCACAAATCCACCTTCC
CACCATGGTTTATAAGTAGGTTTATAACTAGTCCTTGCCTTACTTCTACA
TCAAGTCTAGCGGCATTTACAATAACCTTATGGCATACGTTGTGCTTCAG
CTAATCAACCATTGTCATTATTAGGACGACTCTAGGTGCCCACTGGTTCG
GCTTCCACGACCCGCACTCCGGATTGTCTCACTACGAGTGGCGTGCAGGC
ACGACCCCTGGCGGAGATGACGTGTACAGCACCACACGGCTACATCTGAC
GGAGCTGGTCCACATCTCCCAGCTGGACCCGCCTCTTCCACTCAACCAGA
CCGTGTACGTCACAGTCAGAGCCTACAACAAAGCAGGTCTGTTGATTTTG
TTATGATGTAAAATAGAGGCTGATTACTCATTTCGTCTAAAAAAATATGA
TCACGAAGCACTGAGCCAATTACATTCAGATGTAGATGTAACGAGACTGA
CCTAGAGTAATGAATTTGAAATATTACTCTAATCATTCAGTGGACTTTGG
ATACATGGGAAACATGCCTATGGTTCGTTATGGTCAAATGAAATAATCTC
AAAGCCAACTTGTCGGTGGCAAAATCAACTACCGGTCAAGACTGTATCTA
AGTGGACACTAGGACTTCCTTGGCTGTAGAAAATAGTCTTGGCTGGCATT
TTGCCACCCGGACACGTCTGCTTGAATATCTAAATTATGAGATGACTTGA
TTTCTTCAGGCTTGTACGTGGAGAGAACGTCAAACGGTTTCCGTATTGAC
GAGTCTCCGCCAGTGATGTTGATGGAACCACAGTTTGATCTGACACAGGG
GTCCATTGTTCCTGATACACAGGTACTTTGTTGTTCATACTCAGGTACTT
TGTTGTAATCAAATCGTTTCAAAATGATAAAAATTAAACATAAAGTACTT
TCTGTCATATAAAGGTATACTTTTATCTGATGATACATCATAATCATGAG
AGGGGACAGGCAAATACATGCATATATTGGACCCTGTGTATTGCACGAGT
TATCGTATTGCATTGCATGCATTTTATTGCATTGAATTGTCTCACATTGT
TTTGTGTTGTATTGGAATGACTTGTATTGCAATTATGTACCTCTTGTGGG
CCGGTGTTTTTTGCATCGGAGAAAAATAAGTAGTTGTCTTGAAAGTTAGT
AGAAATGTATCACGTTTTGTTTCCATCGTCCCCCCAGGTGTGGAGAACCA
CCCTGTCCGTGAGGTGGGAGGTCGTTGACCCCAAGAGCTCCATCGAGCGG
CAGCACCTGTCAGTCTTCACTCACCACCAGGCAGGGAT Coding sequence (CDS) from alignment at Sc0000692:16762..22849- >transcript:BL96972_cuf8 ID=transcript:BL96972_cuf8|Name=transcript:BL96972_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000692:16762..22849- (Branchiostoma lanceolatum)
ACGTTTGACCACGCCCTGGACTTCACCCACTGCCTGCGGCTTCTGGTTCG
AGGCTATAACAAGGCGGGGCTGTCTTCCCTGTCTGCCCGGGATGTGATCA
ACTGTGACACCGACAATCCCGCGGACTTCAGGACTCCTCTCGTCATCGAT
GCGGTGGGCGAGTATGAACAGCTTTCTCCCAACCATACAAGTGACATATA
CCTAGAGACCAACCAAAGATGGCCACTGCCTGATAAAGAGTTCACCCCGG
CTTCTGCCAAACTGTCAGCCGTCTGGCCAACATTACGTCATGGTATGTAC
AACTGGAAGGTCATCTCCGACAACTCCATACGTCACTGGGCCTACGTAAC
TCCCCAGCATGCTCTGCGTTACTCCGACTATGAGTGTGACAGCCAAGAGG
TACTCTCCTGCGGCACAACAAAGGATAATTTCGTGAACGTACCGGGTCTC
GGACTCCGCCACGGTCGGCGGTACCACCTCTGTGTCCACGCCGACCAGAC
CATCCTGCAGTTTGAGACGTTTGACCAGACCCTGGCTGAAGTAGACACCT
GTTCTAACGGAGTCACCGTGGACCTGACGCCGCCTTCACCTGGACAGGTG
TGGGTCAACAGGAGGGACCAGGATTTCCAGACCTCGACGTCTGAACTGTA
CGTTTTCTGGGACTCTTTTGCTGACGTGGAGGATCATGGGATGTCATCAC
ACCGCAGCGGCATACAGAAATACGAACTGGCAATAGGATCGTCGCGCGGT
GGTGTCGACATCAAGGATTTTAAAGAACAGGGTGTCACAAACATGGCCGC
CATGCACCACCTTCATCTGCAACAAGGGCACACGTATTACGTCACTATCC
GGGCAACCGACTACGTTGGGTTCTCTGTGACGAGTGTATCACAAGGTGTG
ACCATTGACGTCACTGTTCCCATGGTAACGGAAGCAAAGATTGACGTCGG
CGGCCGTTATCATCTATCTACGTCATCAGTGACGGCGAGATGGGATGGTG
TTTTCCTGGACCCTGAGAGCGGTATATCTCACTACGAGTGGAGTGTTGGG
TCCGGGCCGGGCCATGCTGACATCATGCCGTTCACCCGGACGGAGTCTGA
AGCAGCCGTGTCAGACCCAGCACTGGATCTACAGCTGCAGGAGGGACATG
TCTACTATGTGTCTGTCAAGGCATATAACGGAGCGGGACTGTCGGTCATC
GCGGTGTCATGGCCGACTGTGGTGGAGAGCTCGCCGCCTGAACCCGGGGT
CGTCTATGACGGGCTTCCATCACCGGGCCAACAAGATGCAGACTTTCAGA
CTGAGTTGGACACGCTGCATGCGAGCTGGGCAGGATTCCGTGATGCTCAC
ACCGCCATTATAGGGTACAAGTGGAGTGTGGGGACATGTCCCGGATGTGA
TGACGTCATGGAAGCTGAACATGTTGGCTTACTCACTGACGTTTCTGCGA
GTCATCTCGGTCTTGTCCCTGGAAAGAAGTATTACGTCACAGTAACAGCC
TGTAACGCAGCAGACCTCTGTACGTCTGTCTGCTCTGATGGCGTCATCAT
AGACAACTCCCCGCCGGCCCCGGGGGTGGTGTATGACGGGGTGGGTGATA
TGGACAGCCGCTTCCAAGCATCAAGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000692 | genome | Sc0000692:16762..22849 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96972_cuf8 |
| Biotype | protein_coding |
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