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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96990_cuf4 >transcript:BL96990_cuf4-protein ID=transcript:BL96990_cuf4-protein|Name=transcript:BL96990_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=514bp
EALTTVKSALGILLMNSIYSMQIFFQLVYECYKFVRPHKTGERPPSWKKL
LTFLLADCLGIAAFVTIVYFSSMEGNDPEGWWKVPLCVILISTAWSPVIQ
KLQTRTRNSGTTDAESSRTTTEERHKLGPNEDDDDVMDISKRKDGRLTSS
LITSFWKLLLTPAVVTLYVLHYQIGDVSTMWSLSGWNTIAVFHPAFDELL
VNIFCSVGAYVLSVFACSICVYYIGFTAPLLCGSIDAILLVYIIPACEVF
IPREACEAEESRYVWGIPAAVGLYIAQTIAVWSLVVQSPSGILEKESQIF
WLPGYNSIFLEQWLMLSRKTKHTSRKQFVRRAKTIRNACVYVCSTMYHES
EEEMEQLLISLRGIANDLEDEANRHFESHIFFDGGCKQGQPSRWALQLMA
LIDKTMCPPGEVTIFNGTSCEKWDTPYGLQFCWTVGARKMSFNVHLKDNS
KVRAKKRWSQVMYMSYVLDYLARYNPLGMSSGAILDDDIDASSPRKGAVT
FGRSGPHRARLNGS Run BLAST on NCBI mRNA from alignment at Sc0000004:3438319..3442846- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96990_cuf4 ID=transcript:BL96990_cuf4|Name=transcript:BL96990_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4528bp|location=Sequence derived from alignment at Sc0000004:3438319..3442846- (Branchiostoma lanceolatum)
TGGAAGCCCTCACAACCGTAAAAAGCGCCCTCGGCATTCTCCTGATGAAC
AGTATCTACTCCATGCAGATCTTCTTCCAGCTTGTGTACGAGTGTTACAA
GTTTGTTCGCCCGCACAAAACGGGGGAAAGGCCGCCATCTTGGAAGAAGC
TGCTGACGTTTCTGTTGGCCGACTGCCTGGGAATCGCCGCGTTCGTCACG
ATCGTGTACTTCAGTTCTATGGAAGGGAACGATCCGGAAGGTAGGAAAAA
CTTTATTCTTTAAATCTTAATTTCAGCATGCAGTACTGTTAGTGCATCTC
TCACCTTGCTTAAACCTATTTCATTTATAATATGCCATAGTGCTACACAC
AACGCAATTCTCGCAATGCTGCAAACAACGCTATTTAGTTTTTTATATTG
CAGATGGTTTGTACATTTTTAGGCTTTGCAGATATTCTCAATGTGCCGGA
TAAGTGAGCGTCAGTACACGTCACTTTCTAAATGTGTGATGTTTTAATCG
TTTGTTTCGAAGAGCTAAGTTATTCTTCTTAACCGTCCCCAGGTTGGTGG
AAGGTCCCACTGTGCGTGATCCTTATATCCACCGCCTGGTCCCCAGTCAT
CCAAAAGCTCCAAACCCGTACTCGGAACTCCGGCACGACGGACGCCGAGT
CATCCCGAACCACCACCGAAGAACGACACAAGCTCGGCCCGAACGAGGAC
GACGATGACGTCATGGACATCAGCAAGAGGAAGGACGGTCGACTGACCTC
TAGTCTGATTACGAGCTTCTGGAAACTTCTTCTCACCCCGGCTGTGGTGA
CACTGTATGTGTTGCACTATCAGGTACAGTGGAAGCATTTTGTTGATTCT
AATTATTTAGCATCCATTTAAACTCATTGACATGACAGCATGCACTATAT
GCATTGTTTTCTTATATATGCCAAGCGCCTGCCGACAAGAGCAAACCCAC
CCTGGGTTATGCTAGGGTCACATTTCCAATCCGGGGCCCGGCCGGGCAGT
CTTTGGGAACGAAAAGTATGATATAAAAGAAAACAAAAAAACCAAACGTA
CCCAAAATTATTTAATAGTATAGCTTGTGCAAATCCATTGACACACACTT
TGATTTTTCGTTTCCGAAAACAGCCCGGCCGGGCCCCGGTTAGGAAATGT
GACCCTAGCATAATCTGAACGTTACTGTTGATAGTACCATTTAAAACAAA
TAACAAATTTTGCACTTTTTCGTTCTTCCAAGATTGGAGACGTGAGCACC
ATGTGGAGCTTGTCGGGATGGAACACCATCGCGGTTTTTCACCCGGCGTT
CGACGAGCTGTTGGTCAACATCTTCTGCAGCGTGGGGGCTTACGTCCTGT
CTGTGTTTGCCTGCAGGTCAGTCAATCGACTATTACCATCTGAGAATAAG
CGCTTTCACATATCTTCGAGTACACACGTGCGGTGTCAAAGGTGTAGGCC
CCTGGCTTGTAAACATTTGTCGTCTCGACTATCGTCCCAGACGCATTTTG
TTTACGTCTCAGGCTGCAGGGGCCTTCACATTTGACACCGCACAAGCGTT
CTTGAATGTGTGTAAGCGCTTATTCAGATCAAATTCATCTCAAGAACAGT
CTATAACCCATTTTCACTATTATGTTATTATAATATACCATTTATTTTTA
CCAATAGCATTGGAATTTTACCAAATTAACACTATTTTTGTTTTATTGCA
GTATTTGCGTGTACTACATCGGCTTCACGGCACCCCTGTTGTGCGGAAGT
ATTGACGCCATCTTGCTTGTCTACATCATCCCAGCGTGTGAGGTGTTCAT
ACCTCGCGAGGCTTGTGAAGCGGAGGAATCAAGGTTAGTTACGCTGTTTA
CGTTATCAAATTCTCTCAAAATCAATAGTTGATTTATTCAAGTAATGCTC
ATGAACAGGGCATGATAATATCATATTGAATATCTCTGTCCTGGTAGGTG
CTAATATTGCGTCGGACGCTCATACAATATATTGTAACTATTTATGTCGG
TCATCAGCATAAGTTGAATATGTATCCTATAACAATGTCATATACCATAT
ACACAATATTAAGTTGAATATGTATCCTATAACAATGTCATATACAATAT
ACACAATTATACATAACTAGGGAAATATTAATCTGCAATACTCCCTTTAC
TAGGTACGTGTGGGGCATTCCTGCGGCGGTTGGTCTGTACATCGCACAAA
CCATCGCCGTGTGGAGCCTGGTGGTTCAGAGTCCCAGCGGGATTCTGGAG
AAAGAGTCACAGGTCCAGTTAAATGTTATTTTGACTGGTTAAAGTATATG
AGATAAACATTAGGTAAAGAAAACCTACCAAACAAAAACGTCTTGATTTT
GACCAAAAAAAATAATGCCCAAAGACCACGTCGTCTAACGTTACTGCACT
GAATTTTTTTTTGTCAACATGGGATTCTCCTTCTCAAATTAAGGCAACCT
CATGATGTCTATCCTTAAAGTTTAATGTAAAGTTATAACAAAGACAATCA
TCTGGCCTGGGGCCATAAAAACTTAGACTGTAGACAACAATGCATCACGA
GTATACATGCGCACTGACTTGCGGCCAGAATGATGACAAGTGTGCACTAG
GAACTATGAAATGACTTATCACAACGCTTTTGTTTTATAGATTTTCTGGT
TGCCAGGCTACAACAGCATTTTCCTGGAGCAGTGGCTGATGCTGAGCCGG
AAAACCAAGCACACCAGCCGGAAACAGTTTGTCCGGCGTGCCAAGACTAT
CCGGAACGCGTGCGTGTACGTCTGCAGTACCATGTACCACGAGGTGAATC
AAATCGTTTATTTTTCATGAGACAAACATCAAGTATGTATCATGTACTGT
CACTAATAGAGATCTTTCAAATAAACAAACAAGTAAACAAACATATTCAG
TTATCAAATATAATCAATATAATAAATGTTGGCGATTGAGATTTAATGAA
GTATGATACAGTATATACAGTATATACAGTATATACGGTATCTTAATACA
ATCAATCAATCAATCAATCAATCAATCAATCATTCGCGGGCATCAGTTTC
TGATGCATGGCGCCTGCAAACATGCCTGGGGCTCGCCAGGCTGGTCTGCT
CTCGGCGTAGACCCTCAAGTTTGTTCTGGTGACCCACAGCCTTTGGAGTC
TATTGAAGATCAGATCTCCCAACCTTCCTCTCGGGTGACCTTTTACCACA
ACAGTGGAAATATTGAAGCGTTTTTGCTTAGATGTATCATGAAAAGATAT
TTATAATTTGTGATTTCACTTCCCTACAGTCTGAAGAAGAGATGGAACAG
CTGCTCATCTCTTTGCGAGGCATCGCTAACGACCTGGAGGATGAAGCGAA
CCGCCATTTTGAATCCCACATCTTCTTCGACGGTGGCTGTAAGCAGGGCC
AGCCCTCGCGCTGGGCGCTGCAGCTCATGGCGCTCATCGACAAGACCATG
TGTCCGCCGGGAGGTACGGTGAAGTCAACTTTGTAAAAAAAATTCATGGC
ACTTACGAACATTGTTGTATTCCGTAAATAATTTTATCAGCTTGGTAGAA
CATAGGATATTGGAGTTTTTTGTTTTTGTTTTGTTCACACAACCAGTAAA
TCTCACCTGCTGACGTGTCAGTGTCTGTTGTATTGTCGATAACGATTCAC
TTAATGTATGATGTACCGAGCTAAGCAAAAGTACAAGTCAACTTATTACA
ATCATGAAACAGTTGGTTTAATATTCTCCGTTAAATTTTCTCCAGTTGAT
TTAAACATTATCTACCTTATGTGTCATTTTTTTTTATTCGACAGTATAAC
GAGCGGCAGGCCATGTCTACGATTCGTAAATGTCGTCGATTCGATTGAAG
ATGATTTCTCATTTTCTTATTAAACTTAACCTACTGTTTGTAGAGGTGAC
AATATTCAACGGGACGTCCTGTGAGAAGTGGGACACGCCGTACGGGCTGC
AGTTCTGTTGGACGGTGGGTGCGAGGAAGATGTCGTTCAACGTCCATCTT
AAGGACAACTCTAAGGTGTGTCACTTTCCCAACAAAAAATAGCTTACAAC
GATATTTGCCTTCAAGTGACTGTGACGTAACGTTAGTCCGCTTTGCTGGA
AGGTTTTCTGAAGTCTGCCATGTGTATGTGTGATAATGTTTGAAATGTTT
ATTTGAAAGAGGTTTTAATTTTTTTTTAGGTCAGGGCTAAGAAGCGATGG
AGTCAAGTGATGTACATGTCCTACGTTTTAGACTATCTTGGTAAGTCAAA
ATTCACATTTTAAGAAAGAGTTTCTTCACAATGCATGTACCATCACACCT
CTGTTATTTATCGTTTGCTCCTTATGACCCCCATACGTTTGAGGGACTAA
AAAAAAAGAACAATGTTGATAAGATCCTATTGCGTCATCTTTTTTTCAGC
TCGCTACAATCCGCTCGGCATGTCCTCCGGCGCCATCTTGGATGACGACA
TCGATGCTTCCTCGCCCAGGAAGGGGGCGGTGACGTTCGGGCGCAGCGGG
CCGCACCGGGCCAGGCTGAACGGGTCCT Coding sequence (CDS) from alignment at Sc0000004:3438319..3442846- >transcript:BL96990_cuf4 ID=transcript:BL96990_cuf4|Name=transcript:BL96990_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1542bp|location=Sequence derived from alignment at Sc0000004:3438319..3442846- (Branchiostoma lanceolatum)
GAAGCCCTCACAACCGTAAAAAGCGCCCTCGGCATTCTCCTGATGAACAG
TATCTACTCCATGCAGATCTTCTTCCAGCTTGTGTACGAGTGTTACAAGT
TTGTTCGCCCGCACAAAACGGGGGAAAGGCCGCCATCTTGGAAGAAGCTG
CTGACGTTTCTGTTGGCCGACTGCCTGGGAATCGCCGCGTTCGTCACGAT
CGTGTACTTCAGTTCTATGGAAGGGAACGATCCGGAAGGTTGGTGGAAGG
TCCCACTGTGCGTGATCCTTATATCCACCGCCTGGTCCCCAGTCATCCAA
AAGCTCCAAACCCGTACTCGGAACTCCGGCACGACGGACGCCGAGTCATC
CCGAACCACCACCGAAGAACGACACAAGCTCGGCCCGAACGAGGACGACG
ATGACGTCATGGACATCAGCAAGAGGAAGGACGGTCGACTGACCTCTAGT
CTGATTACGAGCTTCTGGAAACTTCTTCTCACCCCGGCTGTGGTGACACT
GTATGTGTTGCACTATCAGATTGGAGACGTGAGCACCATGTGGAGCTTGT
CGGGATGGAACACCATCGCGGTTTTTCACCCGGCGTTCGACGAGCTGTTG
GTCAACATCTTCTGCAGCGTGGGGGCTTACGTCCTGTCTGTGTTTGCCTG
CAGTATTTGCGTGTACTACATCGGCTTCACGGCACCCCTGTTGTGCGGAA
GTATTGACGCCATCTTGCTTGTCTACATCATCCCAGCGTGTGAGGTGTTC
ATACCTCGCGAGGCTTGTGAAGCGGAGGAATCAAGGTACGTGTGGGGCAT
TCCTGCGGCGGTTGGTCTGTACATCGCACAAACCATCGCCGTGTGGAGCC
TGGTGGTTCAGAGTCCCAGCGGGATTCTGGAGAAAGAGTCACAGATTTTC
TGGTTGCCAGGCTACAACAGCATTTTCCTGGAGCAGTGGCTGATGCTGAG
CCGGAAAACCAAGCACACCAGCCGGAAACAGTTTGTCCGGCGTGCCAAGA
CTATCCGGAACGCGTGCGTGTACGTCTGCAGTACCATGTACCACGAGTCT
GAAGAAGAGATGGAACAGCTGCTCATCTCTTTGCGAGGCATCGCTAACGA
CCTGGAGGATGAAGCGAACCGCCATTTTGAATCCCACATCTTCTTCGACG
GTGGCTGTAAGCAGGGCCAGCCCTCGCGCTGGGCGCTGCAGCTCATGGCG
CTCATCGACAAGACCATGTGTCCGCCGGGAGAGGTGACAATATTCAACGG
GACGTCCTGTGAGAAGTGGGACACGCCGTACGGGCTGCAGTTCTGTTGGA
CGGTGGGTGCGAGGAAGATGTCGTTCAACGTCCATCTTAAGGACAACTCT
AAGGTCAGGGCTAAGAAGCGATGGAGTCAAGTGATGTACATGTCCTACGT
TTTAGACTATCTTGCTCGCTACAATCCGCTCGGCATGTCCTCCGGCGCCA
TCTTGGATGACGACATCGATGCTTCCTCGCCCAGGAAGGGGGCGGTGACG
TTCGGGCGCAGCGGGCCGCACCGGGCCAGGCTGAACGGGTCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000004 | genome | Sc0000004:3438319..3442846 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96990_cuf4 |
| Biotype | protein_coding |
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