transcript:BL97020_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97020_cuf1
Unique Nametranscript:BL97020_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97020_cuf1

>transcript:BL97020_cuf1-protein ID=transcript:BL97020_cuf1-protein|Name=transcript:BL97020_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=416bp
DGFTGDRCEEDVDECESSPCQNDGICTDDANSYTCTCADGFAGNRCEENI
DECESSPCQNGGSCSDSVNSFTCACVDGFTGDRCEENIDECQSGPCQNGG
TCYDDVSSFTCACLKGFSGDTCEEEGDECESDPCQNGGTCQDQVNSYVCT
CSLGYVGDNCETEINECDSNPCQNGGTCDDQVAEYACTCPAGFDGLNCEN
DIDECQSSPCQNGGTCNDDVNSFTCACPEGFSGDTCEQEINECDSNPCQN
GGSCEDLLSGYDCACPIGYRGVHCEETEECSPNPCLNGGNCSEINDTYHC
TCPEGFSGVRCEIDDADPTVAPMNTTNPCASRPCQNGGTCEIGLVSYTCQ
CTNGFVGENCELQIPTFPSYVSNTEETMREFCSTNPCENGGTCVSNTETY
VCFCPENHYGRHCEST
Run BLAST on NCBI

mRNA from alignment at Sc0000025:1553245..1557218-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97020_cuf1 ID=transcript:BL97020_cuf1|Name=transcript:BL97020_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3974bp|location=Sequence derived from alignment at Sc0000025:1553245..1557218- (Branchiostoma lanceolatum)
CAGACGGTTTCACTGGTGACAGGTGTGAGGAAGGTAAATGCCCTGACTAA
ATGTTCCATATCGATCGACCCTTTCCTTAAATTTCTTTCAGCATATATTG
TTTCCTTATTGTAACTTACTAATGTACAGCTGGCCTGATCATATGTTATG
ATTAGTACATATGCTTCCAAAGATGTTGACGAATGATCTGTTATGTTTAC
TCAGACGTTGACGAATGCGAATCCAGTCCGTGTCAAAATGACGGAATCTG
CACGGACGATGCCAACTCATATACTTGCACATGCGCAGATGGTTTTGCCG
GAAACAGGTGTGAAGAAAGTAAGGCTGAGTTCAATATCAATTCACAAAGT
TTATAGTACTTGTCCCCCCCCGCCCTGAACATTGAGTTCTCTGATTGGTT
GCTTCAAGTAATGAACGTTGAATTTTACAGACATTGATGAGTGCGAGTCC
AGCCCGTGTCAAAATGGCGGCAGCTGTTCTGACTCAGTCAACTCCTTCAC
TTGCGCATGCGTGGACGGGTTTACCGGAGACAGATGTGAAGAAAGTAAGA
TGTCTTTCAGACAATTCTTAAGACATTGTGATTTTGCACTTTCCAAACAA
AATCAGACGTTGATTTTAGTCTTTCCAAACTAACGTATTCATGGTGAACT
TTGACCTACACAGACATCGATGAGTGCCAGTCCGGTCCGTGTCAAAATGG
TGGCACATGTTATGATGACGTCAGCTCATTCACCTGCGCATGCCTGAAAG
GGTTCAGCGGAGATACATGCGAAGAAGGTGAATTTGTTTCATTCAACCTC
TTAATTTAATTTTTCTATAGACTGATTATTAAATGTACATTTTACAAGGA
AACCATGTTCGAATTTTGTCATCACTTTTCTGATTTTCATTGCTACAGAA
GGGGACGAGTGTGAGTCGGATCCATGTCAAAATGGCGGCACCTGCCAGGA
CCAGGTGAACAGCTACGTCTGCACCTGCTCACTTGGATACGTGGGGGACA
ACTGTGAAACAGGTGTGTTTGCTTCTATTAGCTCAGCTATCGAGACATTA
AATAGCTACATTAAATAGCTACGAAAAAACTACAAATTGAATAGCTGCAA
ATAAAACAAAACCATTAAATAGCTACAAAAAAGGAGGACTTTTGATATGT
TTGCTGTCTTTATCGTCAGACAGGTGTAACTAAATGCGCCTAAGGTAAAA
GTCTAATACTGGTCCATTCCCTTTTTCAGAAATCAATGAATGTGACTCCA
ATCCCTGTCAGAATGGCGGCACCTGCGATGACCAGGTCGCGGAATACGCT
TGCACATGTCCAGCCGGTTTTGACGGACTCAACTGCGAAAATGGTAATGC
CATCAACTTCTTCAAATTTAATTTAATAAATTTCAGTCATCCAATACTAA
CCAGTCCTGTAATGAAAAGGACACATGGCGTAAAGAAATGTAATGTCACA
ACTATTTATGTTGAACTTTGACCTTTACAGACATTGATGAGTGCCAGTCC
AGTCCGTGTCAAAATGGGGGCACATGTAACGATGACGTCAACTCATTCAC
CTGCGCATGCCCCGAAGGATTCAGTGGAGATACGTGTGAACAAGGTGAGA
TGATTTAATGATTTTACCTACCCCACCGTTAGACTCAAATTCGGTTTAGA
CTCTAAGCGTTTTTTAAGGAAGAATATCCGTAAGTTGTAAACTGACCGAA
ATCAAAATCAAGTGTTGGGTTAGACAATGTTCACACGTATCTTATTTCCA
TCTATCCATGCAGTTCCTAAATATATTTTAATTTAGTCATTTCTGTTATT
GCAGAAATAAACGAATGCGATTCGAATCCTTGTCAAAATGGCGGCTCTTG
TGAGGACCTGTTGAGTGGGTACGACTGCGCATGTCCAATAGGTTACCGCG
GGGTTCATTGCGAAGGTAGGGCACATCTTCATATATCAAAATGTAAATCC
AAAACTGTAAATCCTAGGAAAAAAATTGTTACGCCATATTCAATATCTAA
CGTTATTCCCTCCTATTATCAAGATATCAAAAGATATCTCGTTGGGAGTT
GTTTTTTCCAACAGTTATTGTTAACCAACAGTGTTGATTCTTTAAATGAT
GACATCCTTCCTAAACGTAAATGTTTGCTCTCTTCTATTATTGACAGAGA
CTGAAGAGTGTTCGCCTAACCCGTGCTTGAACGGCGGGAACTGTTCTGAA
ATAAACGACACCTACCATTGCACCTGTCCAGAAGGTTTCTCCGGCGTACG
TTGTGAAATCGGTAAGTATTCATTCCTGTTTTATTGTTCTTCCCTGAACA
ACAGACAAATTTAAAAAAGAATGGTGAAATGATATTGATATCATTTTAAA
GATTTGTATATGCTTATTACGTACACAAAGTAAAACGCCTACCATATACC
GAAAAGTTCTCGGTCAGTCCTCTCACCCTTCTTAAGTCGAAATGATCAAA
AGCTTTTGTCACGTGACATGAACGGAAGTGTGACGTCATCAACCAGTCAA
AGGTCCATTTTGAGGAATGTTTTGTTGTTTGTACAGAATTGGTGTATTAA
AATCCTTATAATGCCAATTAACTTTGCTTGGACATTAACTTGCCTTGGAC
TACAATTGATAAACATTTCAAAACTCGAGCGATTTTGTTTCCTGGCAACT
TTCAGTTTAACCATCCAACATGGCGGACAACGCTGACGTCATAGTCACGT
GAGTACAACCTTGATGCTGACGATATTTTACTCTATCCCACAGATGATGC
TGACCCGACGGTCGCCCCCATGAACACGACCAACCCCTGTGCGTCACGGC
CGTGTCAGAACGGCGGGACCTGCGAGATTGGCCTGGTGTCCTACACTTGT
CAGTGCACCAATGGGTTCGTTGGAGAGAACTGTGAACTCCAGATCCCCAC
CTTTCCTTCATGTACGTTGATATTTCCATCATATTTATTTCATATTGATT
ATTTTTTCTTTTTGTTTGCAACTTTTTTTGTTCATGCGTTCAATTAATGT
TATTTAATTAGTGTTCCGATCGAATTGTTTTGTACATGTACCCCCAGGGT
ATATTGAAAATCGCCAAGATGGCGACATGTTCCCCCTGATTAGATAAAGA
ATACTTAAATACATATTATACCTGCCAGTGCTAGGCAAACGCCGATGATA
TGTGCAACATTACTTTTCATTCATTCATTCATAATCAGATTGTCTTTTTT
TCCTTCTGGTCAGTATCTAAACATTAGCGGCCACAGAATTTGACTACCTT
GAGCTGTTAACTGTTTGTTTTCCCCCTGGTGTCTAAATGAGACAACAACA
AAAATTGTAGAGTTTAAATTTCAGGAGCAAAATCACTGTCCTTGGTGTTA
AGGTTAGGGCTGTTGTGTACGGCTTAATGACTTGCTGCTCCAAGACCATT
GAAGTAACAATCAGACTTTAAATTGTTAAGATGCAGCTTTATATATTTGT
AACTGTCGATAACGTTCATTGTATTGGCTTGAATTTAAGTTATGAAAATC
AGAAAATATCACGGTTAACCCTGTCAAATATGAATTGCGAATGAATTCCT
TTGGATTGTGGTTAACATCAGTATGACTTAACGATTATACTTTACCACAG
ACGTATCCAACACTGAAGAGACAATGAGAGAGTTTTGCTCAACCAACCCT
TGTGAGAATGGCGGGACGTGTGTGAGCAACACGGAGACTTACGTCTGCTT
CTGCCCCGAGAACCACTACGGCAGGCATTGCGAGAGTACGTAAAACATTG
CATAATGATACACCCATGCATGATGTATGAATGATGTATGAAGAAACAAA
TCCTATTCCAACAAATCCAACTACCAACAAATACGACCCAAGCTTCTCGA
ATGCTTTACACGTATTCAGCCAATTAGAATTTTTATTTCGGTAGTACTAG
TGGGTGTACAGAATGTGTGAAATGGGACGAAATGGAACGAAATGGAACTA
CAGAAAGTGCGAGATGGAACGAAA

Coding sequence (CDS) from alignment at Sc0000025:1553245..1557218-

>transcript:BL97020_cuf1 ID=transcript:BL97020_cuf1|Name=transcript:BL97020_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1251bp|location=Sequence derived from alignment at Sc0000025:1553245..1557218- (Branchiostoma lanceolatum)
GACGGTTTCACTGGTGACAGGTGTGAGGAAGACGTTGACGAATGCGAATC
CAGTCCGTGTCAAAATGACGGAATCTGCACGGACGATGCCAACTCATATA
CTTGCACATGCGCAGATGGTTTTGCCGGAAACAGGTGTGAAGAAAACATT
GATGAGTGCGAGTCCAGCCCGTGTCAAAATGGCGGCAGCTGTTCTGACTC
AGTCAACTCCTTCACTTGCGCATGCGTGGACGGGTTTACCGGAGACAGAT
GTGAAGAAAACATCGATGAGTGCCAGTCCGGTCCGTGTCAAAATGGTGGC
ACATGTTATGATGACGTCAGCTCATTCACCTGCGCATGCCTGAAAGGGTT
CAGCGGAGATACATGCGAAGAAGAAGGGGACGAGTGTGAGTCGGATCCAT
GTCAAAATGGCGGCACCTGCCAGGACCAGGTGAACAGCTACGTCTGCACC
TGCTCACTTGGATACGTGGGGGACAACTGTGAAACAGAAATCAATGAATG
TGACTCCAATCCCTGTCAGAATGGCGGCACCTGCGATGACCAGGTCGCGG
AATACGCTTGCACATGTCCAGCCGGTTTTGACGGACTCAACTGCGAAAAT
GACATTGATGAGTGCCAGTCCAGTCCGTGTCAAAATGGGGGCACATGTAA
CGATGACGTCAACTCATTCACCTGCGCATGCCCCGAAGGATTCAGTGGAG
ATACGTGTGAACAAGAAATAAACGAATGCGATTCGAATCCTTGTCAAAAT
GGCGGCTCTTGTGAGGACCTGTTGAGTGGGTACGACTGCGCATGTCCAAT
AGGTTACCGCGGGGTTCATTGCGAAGAGACTGAAGAGTGTTCGCCTAACC
CGTGCTTGAACGGCGGGAACTGTTCTGAAATAAACGACACCTACCATTGC
ACCTGTCCAGAAGGTTTCTCCGGCGTACGTTGTGAAATCGATGATGCTGA
CCCGACGGTCGCCCCCATGAACACGACCAACCCCTGTGCGTCACGGCCGT
GTCAGAACGGCGGGACCTGCGAGATTGGCCTGGTGTCCTACACTTGTCAG
TGCACCAATGGGTTCGTTGGAGAGAACTGTGAACTCCAGATCCCCACCTT
TCCTTCATACGTATCCAACACTGAAGAGACAATGAGAGAGTTTTGCTCAA
CCAACCCTTGTGAGAATGGCGGGACGTGTGTGAGCAACACGGAGACTTAC
GTCTGCTTCTGCCCCGAGAACCACTACGGCAGGCATTGCGAGAGTACGTA
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97020gene:BL97020Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97020_cuf1-E1BL97020_cuf1-E1-1564476830-161602Branchiostoma lanceolatumexon
BL97020_cuf1-E2BL97020_cuf1-E2-1564476830-161599Branchiostoma lanceolatumexon
BL97020_cuf1-E3BL97020_cuf1-E3-1564476830-161597Branchiostoma lanceolatumexon
BL97020_cuf1-E4BL97020_cuf1-E4-1564476830-161595Branchiostoma lanceolatumexon
BL97020_cuf1-E5BL97020_cuf1-E5-1564476830-161593Branchiostoma lanceolatumexon
BL97020_cuf1-E6BL97020_cuf1-E6-1564476830-161591Branchiostoma lanceolatumexon
BL97020_cuf1-E7BL97020_cuf1-E7-1564476830-161589Branchiostoma lanceolatumexon
BL97020_cuf1-E8BL97020_cuf1-E8-1564476830-161587Branchiostoma lanceolatumexon
BL97020_cuf1-E9BL97020_cuf1-E9-1564476830-161585Branchiostoma lanceolatumexon
BL97020_cuf1-E10BL97020_cuf1-E10-1564476830-161583Branchiostoma lanceolatumexon
BL97020_cuf1-E11BL97020_cuf1-E11-1564476830-161581Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97020_cuf1transcript:BL97020_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000025genomeSc0000025:1553245..1557218 -
Properties
Property NameValue
Transcript idBL97020_cuf1
Biotypeprotein_coding