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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97028_cuf2 >transcript:BL97028_cuf2-protein ID=transcript:BL97028_cuf2-protein|Name=transcript:BL97028_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=668bp
VDPVEQNPKSAKYQVRKKWSSSMMPHWFIYIAWVALFFSSLASAFFLILY
SLEWGRDKSIQWLTTFGLSFGHSMFIVHPGKAVFIVLMMTILCRRRASQG
PGDMMMDELIFTTGGSPEAEDNDDARETAVAASSKASEAPKDIVRVDFAK
QRKEKRKKDKLMRFGKQFVVYILYVVFALLVVNETWDPTAYHAHDDMKRH
LVDGFDKVQKREDMLLWMKTAFTDKLYPAEEYNGETIDWQERVFISDIRA
YRIGPVRIQQWRAETEHCAVTKPSLIHLTKRCLLPWHDSFRHDGNFFKNV
TTSALHRATTSHGRGGYTVDLGEDPAQMRSVLTAMIKGHWLDRLTSTVQV
DFSLYNADASLFHSLRLVYKFLPTGDADTSFSANSFKVINSKGAYAAVVF
LAKAGFVGCVAYLAFNLFKTGKKEGKSFFSNHDNMLEVASLFASLVVIAL
DVVKVVIKKQTESRIHQQRDQVDRGFIDLDQTAHMSEQFVNAVAALVCFT
VLRLCSFLDQISARIEFLSDHAHRWAGQMLGYLIMFLTLIAGFSMLGALL
FSPYVKGYKSLPDASTSLLLMFWKRNDVDWLGLNKGILGPLYIFSFTCTM
VFLIFNVTAAVLLGTVAMMREERVGKAKGRSQNRPKVKRGRRLPARKGVR
YLKPSEGQFTVPTYESEV Run BLAST on NCBI mRNA from alignment at Sc0000077:903252..908598+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97028_cuf2 ID=transcript:BL97028_cuf2|Name=transcript:BL97028_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5347bp|location=Sequence derived from alignment at Sc0000077:903252..908598+ (Branchiostoma lanceolatum)
CGTTGACCCCGTGGAGCAAAATCCCAAATCCGCGAAGTACCAGGTGAGGA
AGAAATGGAGTTCGTCCATGATGCCGCACTGGTTCATCTACATCGCCTGG
GTGGCGCTGTTCTTCTCCAGCCTGGCGTCGGCCTTCTTCCTGATCCTGTA
CAGTCTGGAGTGGGGGAGGGACAAGTCCATCCAGTGGCTCACCACCTTCG
GTCTCTCCTTCGGCCACTCCATGTTCATCGTTCATCCAGGAAAAGTACGC
TTAACACTTGACTTGCCTTCCCTGTTCGTACAATGTCACAAAATTAATAA
AATGGAGATCCCAATAAAACAAACAAACAAAAAAACTTGACTTGTAGACT
GGGTTTAACGTCAGATTTTCATCTCCAAGATTTCAATGTGCAGTCTCAGT
GCTTAAAGGATCAATTCTATTGTATACAACATTGTTTATTGCTTCAAGTG
AGTCGGCCAATGTTTAAGTCCCTGTCACACAGCACGAAAATTGATCGGCC
GGGGAGCTCTAAATGACATACGCGGCATAGATCGGCCAATTGTTGTAGGT
CACTGAACCTCTTCAAACATTATAGAGTAGATTTTCAGGCAAAAATAAGC
ACGACCCTCCAACGCTTTCAAAATCGGGCGACCTTCTATTGATCATCAAA
TACGACCGAAGCTCGTGTCGAGTATGTGACAGGGGCTTTACGACGACCCG
TTTGTTCTAAAATTTCAATGGATGCAATCAATGTTTCCAGGCGGTTTTCA
TCGTGCTGATGATGACCATCCTGTGCCGCCGTCGGGCTAGCCAGGGACCG
GGAGATATGATGATGGACGAGCTGATTTTCACGACAGGCGGCTCGCCCGA
GGCCGAGGACAACGATGATGCTCGCGGTAAGCTAAACGTGTATATACGCT
TCAAAGCTAGGCATACCGTGCTTATATGTGTATACGCAATTATAAGAGAA
ATGCACTTACAATATAGATAACAGCTCATTTTTTACGAAATGATCTATAA
GACAATATTACATTCTATCGATAGAACGATCAGCTACTGCCTGTATCAAC
AGCTCGAGGGTTGGCCACCCTCATTAAATCACGACCCCTATCGCTCCACG
AAACGCGAGCGATGTAACGTGGAGCGATAGGGGTCCTGATTTAATGAGGG
TGGGGTTAGCATGAATTGATTATTTTTGTTGTATCTCCTATACAGAAACA
GCTGTTGCCGCATCAAGCAAGGCAAGTGAAGCGCCGAAGGACATCGTCCG
CGTGGACTTCGCTAAGCAACGCAAAGAGAAACGGAAGAAGGATAAACTGA
TGCGATTTGGGAAGCAGTTCGTGGTGTATATTCTGTACGTGGTCTTCGCC
CTGTTGGTTGTCAACGAAACCTGGGATCCAACGGCCTATCACGCTCATGA
CGACATGAAGCGACATCTTGTCGATGGCTTTGACAAGGCAAGCATAATCT
TGTACACCTTTTGTGTTAAGGAAGAAGCAAAATCATGGAAGCATGAAAAA
CTTTGGGATCTGCTAATCAGACTATCATAAATCATGAGACTCCTTTCTTG
ACATGTCAAATATATGTCTTGATGTGCAGGTTCAGAAGCGGGAAGACATG
CTTCTCTGGATGAAGACAGCATTCACAGACAAGTTGTACCCAGCGGAAGA
GTACAACGGTGAGACGATAGACTGGCAGGAGCGGGTTTTCATCAGCGATA
TCCGGGCGTATCGCATCGGCCCCGTTCGGATTCAACAATGGAGAGCAGAA
ACAGGTGCACGAGATTTAAGTTTTGTTGGATCCGGAGGCAAAGTTGACAT
TAATAGTTTTCTTCAAATATGCTTGTGTTGCCTTTAGCATTCATTACATG
ACTTTGACAGTTTTATAACACAAATATTTTATTCTTCAAAGAACATTGTG
CTGTGACGAAGCCCTCCCTCATCCATCTGACGAAGAGATGCCTGTTGCCG
TGGCACGATAGCTTTCGACACGACGGCAACTTCTTCAAAAACGTCACCAC
GTCCGCGCTGCATCGCGCGACCACCTCGCATGGGCGTGGCGGATACACCG
TCGATCTTGGAGAAGACCCGGCCCAGATGAGATCAGTCTTAACAGCGATG
ATTAAGGGTCATTGGCTGGACAGGCTGACGTCCACCGTGCAAGTCGACTT
CTCCCTTTATAACGCGGACGCGTCGCTGTTTCACTCGCTGAGGCTCGTGT
ACAAGTTTTTACCGACGGGCGACGCAGATACCAGCTTTTCAGCTAATTCG
TTCAAGGTAATAAACAGTAAGGGGGCATACGCAGCAGTGGTCTTTCTCGC
AAAGGCAGGCTTCGTCGGCTGCGTCGCTTACCTGGCCTTTAATCTTTTCA
AGACGGGGAAGAAGGAGGGGAAATCGTTCTTCAGTAACCATGACAACATG
CTAGAGGTGGCCTCCCTGTTTGCCTCACTTGTGGTCATCGCTTTGGACGT
GGTCAAAGTCGTCATCAAGAAACAGACGGAGAGCAGAATTCACCAGCAGC
GTGACCAAGGTATGGCGAGTTAATGCCAAGGGACACGTCTTAAAGCCGGC
GTCACACAGCAGGAAAATAGGTCGCCCGGCGAGTCTGCGAGCTCTTAAAG
GACATTTTCGACAGGAATACGGCCGGTGTTCTCTCGATCACTGCGCGATT
TGTAGAACTCTGCCGATGTTCGCAGGTCACTGACCATTAGCCGGTGTAAC
AGCGAATATCATCAGGCGAAAAATACGCCCTATTCCCTACGCCCTTTGAC
ATTCGGTAACCTTGTGGCGACCAACACTAGATTCAACCGAAGGTCGATGA
CAGTGTGACGCCGGCTTTACAGAAAGGAACATCGAGTCAATGTTTTTTTT
TTCCGTGAAGAAAGGAAGGAGGCGGGACTTTGTTAAAAGATATAGATGCT
GTGATACAGACTGAAATTAGGTTTTGTACTCCTAAGTGTTAACAGGAATC
AGTTATGGTCATTTTTTCTGGTCATAGTGATGGGATTCAGGCTTATTATA
CACCCCTTCTTAGCAGTGCGTCACCACTGCTAATTCTCGCGCAACTTGCT
ATAGCTTTTTCAAAAGCTTTTCTTTTCCCTGCAGTGGATAGAGGCTTCAT
AGACCTGGACCAGACCGCCCACATGAGTGAGCAGTTCGTGAACGCCGTGG
CCGCCCTGGTCTGCTTCACCGTGCTGAGGCTGTGCAGCTTCCTGGACCAG
ATCAGCGCCCGCATCGAGTTCCTCTCCGGTAATTATCTGAACTATCAAAT
GACAGTTTACAGATTAACTATATATTTTAACTTATACACTACTATAACAC
TGGAAGCTTACGGGACTGCCACTGTCCCCTTAACATGTATATCAACCAGC
ACCAACGAAAGTAGTTCTTCAGCATCAGTGTTCTTTTTTCAAACTATAGG
CCACTTACAGTTTAGTGTAAATGAGTGGTTCTTCAGTATTTGGGGAACTC
AATCGAGTGTCTGTTGTCCTACTGATGTGTTGTCTCTCCTTGACAGATCA
CGCTCACCGCTGGGCAGGCCAGATGCTGGGATACCTGATCATGTTCCTGA
CGCTCATCGCAGGATTCAGCATGCTAGGTACGTCTATGTTGTCCTTACAG
CAGCAATCTTACCACACCTGTCTGTGGAACTTACAGACATGTCATGTACG
AGATGCATCTCCACCTTTTGGAGCTATGCGTCTCATACATGAACCGCATA
GCAATAAACAATGGGATCAAAACCCAGTGTCGTTTAGATATAGACCTCGT
GTGCAACTCCATAATCAGACATTATCACGAATACAACTTTTCTTTTGTAC
TCCTTCCAGGGGCACTCCTGTTCAGCCCTTATGTGAAAGGGTACAAGTCC
CTGCCTGACGCCAGTACAAGTCTGCTGCTGATGTTCTGGAAGAGGAACGA
CGTGGATTGGCTGGGGTTGAACAAAGGCATCCTGGGACCGCTCTACATCT
TCAGCTTCACGTGCACGATGGTGTTCCTCATCTTCAACGTGACGGCGGCA
GTGCTCCTGGGCACGGTGGCCATGATGAGGGAGGAACGAGTCGGGAAAGC
TAAAGGAAGGAGCCAGAATCGCCCGAAGGTGAAGAGAGGCAGACGATTGC
CTGCTCGGAAAGGGGTTAGGTATCTCAAGCCTTCCGAAGGTCAATTCACT
GTGCCCACCTATGAAAGCGAGGTGTAGGAAAGAAATGAATGTAAAGAGCC
ATTTGAGTTGACAACATTGATAACTGTACAATTACAGCCTTTCACTAAAT
AGTATGCATATATATCATATTCATATATTCATGTATACAGTAAGAGCCCA
TAATGTGTTCTGAGTATATATAGCAAATTAAAATTATAGCTAATTATGTT
ATTATCTAAGGAAGTTATATGTATCAACTAGTTAGCAGCAATATTATGAA
GGTTTTATTTCTCCTTGACCTCGGGTGATTTAAAGTATTGTACATAACCG
AATTTGTAATATAGCAGGCTTATACTTTGTGAGAGGAAAGAGGGAGGTAA
TTTTTATCAGGACGCAAAGCCAGTCCTCAACAAAGACCGTGGTTGGTATA
AACCTCTTGCCACTGTTGACTATTTGGTGACGTCATATGCCCGTAGCCGC
AAGAGACTAGTTTGTTGCGATGGAATACGATTTAGCAGTTCATTGAATTG
GCAATCAGGATGTAGTAGTTGAATACGTTAATAGATACGAGTTGCAAAGT
TGTACATAAAGAATACCTTATCATTAAGATTTCAAGTTAAAGGTTCGTTC
AGTTTTAACTTATTTGTATTTACCGGAGGAAATTACGTGACTGACCTTAA
AGACTGACCTTATGTAACAAAAGATGGATTGAATAGCAAGTTCTTCATAT
ATATACCACATTTATCTCACATGTGCATGGATAGAGAATATGTAAATATT
GCCATTTTAATTGCATTATGATGGAAAACTATAAATAACTTTTAATGTAT
ATACAACGTTAGTATTAATTATTGCAGTTGATTAGTGTTGTAAATATTCA
ATCAAGATTATTATAAAACATATTGCACGAAAAATGTCAGTTACCCTGCA
GTGGTTTACTTTTCTCTCCTAAAAGATTAGTCCTCATTATTTATATAAAA
AGTGCTAGATTCATTCTATTTCTATGAGATCATCAGAAACAATATCAATG
ATGATGATAGTTTGTAATTCACCCACTACAAAATTCGACATGGACGCGTA
TATACGCGTTTGTAACAATTAACAGAGCATAGCAGATGGCTATCTGTCAA
TGATTTATATGTAATTTTGTCGCTTATACCTTTTAACGATCAGACAAGCA
TGACAATACGTCAAGATGTAACAGATGTGAATACAATAAAGATGTAC Coding sequence (CDS) from alignment at Sc0000077:903252..908598+ >transcript:BL97028_cuf2 ID=transcript:BL97028_cuf2|Name=transcript:BL97028_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2007bp|location=Sequence derived from alignment at Sc0000077:903252..908598+ (Branchiostoma lanceolatum)
GTTGACCCCGTGGAGCAAAATCCCAAATCCGCGAAGTACCAGGTGAGGAA
GAAATGGAGTTCGTCCATGATGCCGCACTGGTTCATCTACATCGCCTGGG
TGGCGCTGTTCTTCTCCAGCCTGGCGTCGGCCTTCTTCCTGATCCTGTAC
AGTCTGGAGTGGGGGAGGGACAAGTCCATCCAGTGGCTCACCACCTTCGG
TCTCTCCTTCGGCCACTCCATGTTCATCGTTCATCCAGGAAAAGCGGTTT
TCATCGTGCTGATGATGACCATCCTGTGCCGCCGTCGGGCTAGCCAGGGA
CCGGGAGATATGATGATGGACGAGCTGATTTTCACGACAGGCGGCTCGCC
CGAGGCCGAGGACAACGATGATGCTCGCGAAACAGCTGTTGCCGCATCAA
GCAAGGCAAGTGAAGCGCCGAAGGACATCGTCCGCGTGGACTTCGCTAAG
CAACGCAAAGAGAAACGGAAGAAGGATAAACTGATGCGATTTGGGAAGCA
GTTCGTGGTGTATATTCTGTACGTGGTCTTCGCCCTGTTGGTTGTCAACG
AAACCTGGGATCCAACGGCCTATCACGCTCATGACGACATGAAGCGACAT
CTTGTCGATGGCTTTGACAAGGTTCAGAAGCGGGAAGACATGCTTCTCTG
GATGAAGACAGCATTCACAGACAAGTTGTACCCAGCGGAAGAGTACAACG
GTGAGACGATAGACTGGCAGGAGCGGGTTTTCATCAGCGATATCCGGGCG
TATCGCATCGGCCCCGTTCGGATTCAACAATGGAGAGCAGAAACAGAACA
TTGTGCTGTGACGAAGCCCTCCCTCATCCATCTGACGAAGAGATGCCTGT
TGCCGTGGCACGATAGCTTTCGACACGACGGCAACTTCTTCAAAAACGTC
ACCACGTCCGCGCTGCATCGCGCGACCACCTCGCATGGGCGTGGCGGATA
CACCGTCGATCTTGGAGAAGACCCGGCCCAGATGAGATCAGTCTTAACAG
CGATGATTAAGGGTCATTGGCTGGACAGGCTGACGTCCACCGTGCAAGTC
GACTTCTCCCTTTATAACGCGGACGCGTCGCTGTTTCACTCGCTGAGGCT
CGTGTACAAGTTTTTACCGACGGGCGACGCAGATACCAGCTTTTCAGCTA
ATTCGTTCAAGGTAATAAACAGTAAGGGGGCATACGCAGCAGTGGTCTTT
CTCGCAAAGGCAGGCTTCGTCGGCTGCGTCGCTTACCTGGCCTTTAATCT
TTTCAAGACGGGGAAGAAGGAGGGGAAATCGTTCTTCAGTAACCATGACA
ACATGCTAGAGGTGGCCTCCCTGTTTGCCTCACTTGTGGTCATCGCTTTG
GACGTGGTCAAAGTCGTCATCAAGAAACAGACGGAGAGCAGAATTCACCA
GCAGCGTGACCAAGTGGATAGAGGCTTCATAGACCTGGACCAGACCGCCC
ACATGAGTGAGCAGTTCGTGAACGCCGTGGCCGCCCTGGTCTGCTTCACC
GTGCTGAGGCTGTGCAGCTTCCTGGACCAGATCAGCGCCCGCATCGAGTT
CCTCTCCGATCACGCTCACCGCTGGGCAGGCCAGATGCTGGGATACCTGA
TCATGTTCCTGACGCTCATCGCAGGATTCAGCATGCTAGGGGCACTCCTG
TTCAGCCCTTATGTGAAAGGGTACAAGTCCCTGCCTGACGCCAGTACAAG
TCTGCTGCTGATGTTCTGGAAGAGGAACGACGTGGATTGGCTGGGGTTGA
ACAAAGGCATCCTGGGACCGCTCTACATCTTCAGCTTCACGTGCACGATG
GTGTTCCTCATCTTCAACGTGACGGCGGCAGTGCTCCTGGGCACGGTGGC
CATGATGAGGGAGGAACGAGTCGGGAAAGCTAAAGGAAGGAGCCAGAATC
GCCCGAAGGTGAAGAGAGGCAGACGATTGCCTGCTCGGAAAGGGGTTAGG
TATCTCAAGCCTTCCGAAGGTCAATTCACTGTGCCCACCTATGAAAGCGA
GGTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000077 | genome | Sc0000077:903252..908598 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97028_cuf2 |
| Biotype | protein_coding |
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