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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97033_cuf7 >transcript:BL97033_cuf7-protein ID=transcript:BL97033_cuf7-protein|Name=transcript:BL97033_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=682bp
EERPEEEEEKPEEPEGNRPDLVQLVETTKLVQTLDWLPTNPKWAIEASGV
PKEEDGIVYDPPKILDSDGQTYWAPQGLERYFNEWYVVFDLETTHTIDKV
SLTHLGDTVHDIKTFTMSYATEEDPDTFLPIKSFEGVQPEVNDPQEFAGF
LTPARFFKITITGTYQGYEPYLAGLDFHGVEGELPEDLDPDSVLEDTGLD
VGDLVAIVPIVAAADWLPKPKAPVEPVEEDGITYVEFDYEITYTMDKIEI
SDTTVQSFTLETSTTGEPDTWEVVKTVDDLPEEPDQPRQVTGFLVSSRFY
RITVTSTYEEKKPDSIAVTTFHGVEGKIPKGVNTEDIEDLLADKIDMETI
EEVVDKVTQAKWLPGKPSEPKEEDDGSTTVVFDFETEHTFHEVNIVDESV
KSFTLEVATAEQPDTWTVVTAFDNVEPQDYSGFVVTTRYMRIVVTETYEG
KKTTLASTTFSGAPGGLPVTPLLEELEEGEPEEGEEPGEEEPEESGEEPE
EGGEEPGEGEEEPGEEGEEPGEEGEEPGEEGEEPGEEGEEPGEEEPGEEG
EEPGEEGEEPEEEEEPESPEGGEGSEGAPGPEGPEGGEGPEGPEGPEGAP
GPEGPEGAPGPESPEGGEGPEGAPGPEGPEGGEGPEGAPGPEGPGGGEGP
EGAPGPEGPEGGEGPEGAPGPEGPEGGEGPEG Run BLAST on NCBI mRNA from alignment at Sc0000077:933364..944459- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97033_cuf7 ID=transcript:BL97033_cuf7|Name=transcript:BL97033_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=11096bp|location=Sequence derived from alignment at Sc0000077:933364..944459- (Branchiostoma lanceolatum)
AAGAAGAAAGACCAGAAGAGGAAGAGGAAAAGCCAGAGGAACCAGAGGGA
AACCGTCCTGACCTTGTACAATTAGTGGAGACTACCAAACTAGGTATGCC
AGTTATTTTGTGAATCAGTTAGTTAGTTAATGTAATAGGAAAATGTTAGT
ATAAGTACAACAAACAAACAAGTCACAATGAGCAACAGTATTTCTTTTAT
GATATCAGTGCCTACAAATCCAAGCTCCCTTGCTCTTTGATGCTCACCAA
ATTATACTGATTTAAACTTTTAGTACAAACGTTGGATTGGCTGCCCACCA
ATCCGAAGTGGGCTATAGAGGCATCAGGTGTCCCAAAAGAGGAGGACGGA
ATCGTCTATGATCCGCCAAAGATCCTCGACAGCGACGGACAGACATACTG
GGCGCCACAAGGCTTGGAAAGGTTCGTCTTCACATCATGCAATACAGTAC
AGTACAGGACATATTGATGGACATGCATGTATTAAAACAGTATGAAGGGC
CATACAAGTTTTAAGAACTATTTTCCTGTCATTTCAAACTTTCTGTTATG
TTTAAAGATCGGTATGGACATTTGGGATGATGATGGAATATAGACTTTCA
AGAGTGTATTTAAACAATCATTTAAATGCATCAAAGGACAATCAATGACA
GGCAAAAACATTCTTCCTTCTATTACAACTCCAACTTTTTATAAGGTACA
ACATCGCGAAGTCTCCTCTAGCTGATATGTTCCTTGTTGATCCTCTTAAG
GACCGGTATTCAAAAGTGTGAAGAAGAAAACGTTTTATGCACAAATTTTC
CTTCAAATTTTGCAGGTACTTCAATGAGTGGTATGTAGTTTTCGACTTGG
AAACAACGCACACAATCGACAAGGTTAGTCTGACACATCTTGGCGATACG
GTACATGACATTAAAACTTTCACCATGTCGTACGCGACAGAAGAGGATCC
AGATACCTTCCTGCCAATCAAATCATTTGAGGGAGTTCAGCCGGAAGTCA
ACGATCCCCAGGAGTTCGCAGGATTTCTCACTCCTGCGCGTTTCTTCAAG
ATCACTATCACTGGAACATACCAAGGGTACGAGCCATACCTTGCCGGACT
TGACTTCCACGGTGTTGAAGGTGTGTATGACCATACATGTACATGGTTAT
TTCTTGTTGTTGCTACTGCTGTTGTTGCTCATTCGCACATGCCAATCTTA
CATTGTATGTACTGAATTTTGAGTTGTAATTGTTTTCCCCGCATTCAACA
AGTGCTTTTTTTCTCATATCACTACCAAAAGACCACCTTGTATCCCCCGA
ATCATATTGAAATAACATTATTTGTTTTCGCGATCATTTCAGGAGAATTA
CCCGAAGACCTCGACCCTGACAGCGTACTGGAAGATACAGGACTTGACGT
TGGTGATCTAGTGGCCATTGTTCCCATCGGTAAGCATTTCAGATCTTTTA
CTTATTTCCAACAAAAATAGTAACTTCTCATAAATGCACTTCAACAAGAC
TTGATAATGACTTGAGCATTTGGACGTCTACCAAGATAAGAAAATCTTTT
GTCTTCCATCTTTTCTTAGTGGCGGCTGCTGATTGGCTACCCAAACCGAA
AGCTCCTGTAGAACCTGTCGAGGAAGATGGCGTCACGTACGTAGAATTTG
ACTACGAGATTACGTACACAATGGACAAGATTGAAATCTCCGACACCACA
GTGCAGTCGTTCACTCTGGAGACCTCGACCACAGGAGAGCCAGACACTTG
GGAAGTTGTGAAAACAGTCGATGACCTACCAGAAGAACCTGACCAACCAA
GGCAGGTCACCGGCTTCCTGGTCTCATCGCGCTTCTACCGCATTACCGTC
ACGTCTACATATGAAGAGAAGAAACCGGATTCCATAGCGGTTACCACTTT
CCACGGTGTTGAAGGTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGTCCAGAAGGAGCACCCGGTCCAGAAGGAGCACCCGGTCCAGAAGGCAA
AAAGCCAGAAGAGTCTGAAGAGGGAGGAGAACCAGAAGAGTCTGAAGAAG
CTCCAGAAAGTTCAGAAGAAGAAGGGTCTGAAGAAGAAGAACCAGAAGAG
TCTGAAGAGCCAGAAGAATCAGAAGAGTCTGAAGAAGAAGGACCAGAAGA
GGAAGAGGAAAAGCCAGAGGAACCAGAGGGAAACCGCCCTGACCTTGTAC
AACTAGTAGAGACTACCAAACTAGGTATGACAATTATTTTGTGACTCAGT
TAGTTAATGTAATAGGAGAAGTTTAGTATAATTGCAACGAACAAGTCACA
ATGAGCTACAGTTTTTCTTTGATGATATCAGTGCCTACAGATTCAAGCTC
CCCTGCTCTTTGTTGCTCACCAAATTATACTGATTTAAACTTGTATTTCA
GTACAAACATTGGATTGGCTGCCCACAAATCCGAAGTGGGCTATAGAGGC
ATCAGGTGTCCCGAAAGAGGAGGACGGAATCGTCTATGATCCGCCAAAGA
TCCTCGACAGCGACGGACAGACATACTGGGCGCCACAAGGCTTGGAAAGG
TTCGTCTTTACATCATGCAATACAGTGCAGGACATATTGATGGACTTGCA
TGTATTAAAACAGTATAAAGGGCCATGTAAGTTTTAAGAACTATTTTCCT
GTCATTTCAAACTTTCTGTTATGTTTAAAGATCGGTATGGACATTTGGGA
TCCAATAATGGAATATAGACTTTCAAGAGTGTATTTAAACAACAAAGGAC
AATCAATGACAGGCAAAAACATTATTCCTTCTATTACAACTCCAACTTTT
TATAAGGTACAACATCGCGAAGTCTTCTCTAGCTGATATGTTCCTTGTTG
ATCCTCTTAAGGACGGGTATTCAAAAGTGTGAAGAAGAAAACGTTTTATG
TACAAATTTTCCTTCAAATTTTGCAGGTACTTCAATGAGTGGTATGTAGT
TTTCGACTTGGAAACAACGCACACAATCGACAAGGTTAGTCTGACACATC
TTGGCGATACGGTACATGACATTAAAACGTTCACCATGTCGTACGCGACA
GAAGAGGATCCAGATACCTTCCTGCCAATCAAATCATTTGAGGGAGTTCA
GCCGGAAGTTAACGATCCCCAGGAGTTCGCAGGATTTCTCACTCCTGCGC
GTTTCTTCAAGATCACTATCACTGGAACATACCAAGGGTACGAGCCATAC
CTTGCCGGACTTGACTTCCACGGTGTTGAAGGTGTGTATGACCATACATG
TACATGGTTATTTCTTGTTGTTGCTACTGCTGTTGTTGCTCATTCGTACA
TGCCAATCTTACATTGTATGTACTGAATTTTGAGTTGTAATTGTTTTCCC
CGCATTCAACAAGTGCTTTTTTTCTCATATCACTACCAAAAGACGACCTT
GTATCCCCCGAATCATATTGAAATAACATTATTTGTTTTCGCGATCATTT
CAGGAGAATTACCCGAAGACCTCGACCCTGACAGCGTACTGGAAGATACA
GGACTTGACGTTGGTGATCTAGTGGCCATTGTTCCCATCGGTAAGCATTT
CAGATCTTTTACTTATTTCCAACAAAAATAGTAACTTCTCATAAATGCAC
TTCAACAAGACTTGATAATGACTTGAGCATTTGGACGTCTACCAAGATAA
GAAAATCTTTTGTCTTCCATCTTTTCTTAGTGGCGGCTGCTGATTGGCTA
CCCAAACCGAAAGCTCCTGTAGAACCTGTCGAGGAAGATGGCGTCACGTA
CGNTTGTCTTCCATCTTTTCTTAGTGGCGGCTGCTGATTGGCTACCCAAA
CCGAAAGCTCCTGTCGAACCTGTCGAGGAAGATGGCATCACGTACGTAGA
ATTTGACTACGAGATTACGTACACAATGGACAAGATTGAAATCTCCGACA
CCACAGTGCAGTCGTTCACTCTGGAGACCTCGACCACAGGAGAGCCAGAC
ACTTGGGAAGTTGTGAAAACAGTCGATGACCTACCAGAAGAACCTGACCA
ACCAAGGCAGGTCACCGGCTTCCTGGTCTCATCGCGCTTCTACCGCATTA
CCGTCACGTCTACATATGAAGAGAAGAAACCGGATTCCATAGCGGTTACC
ACTTTCCACGGTGTTGAAGGTAATCTTTTTTGGTGACATCTCAGGGGTGG
AGCCGTTAGTGAAGTACAGCGATCAAGTTATGAAATATTCTTAAAAAAAT
ATTCCTTAGGGAATTGGTTTTTGGCTACACCTTGCGGGAACAGTCTTTAC
ACATGACTGCTATGCTAATTGAAATGCTATGCTATGTGCTGATGTATGTT
GATGAGTTCTCTTTTCAGGCAACCGATATAACACGTATTGATACAAGACC
GATATAAATTTGTATCATCTGCCCACTCTACGAGGTATTTCGCAAGGATC
ATTCATAATGCTCCATTCTTAGCAAATAAAACAGGTGTAAATCAGTCTAC
AACCGCCTTCTACTCGTTCGCATGTCAGAAGCTAAATCATCAAAAGCCCT
TCGTCGACGTCGTCATGATGTTTTGATGTTACTTTGTAGGAAAGATTCCT
AAAGGGGTTAACACGGAAGACATCGAAGACCTTCTGGCCGACAAGATAGA
CATGGAGACTATTGAAGAGGTGGTTGACAAAGGTACTTATCCATTAACTA
CGGTGGCTGTAACTTAGATGTCCATAAACTATATTGATGGCAAGTGACTG
ATGTGCCACACATTCATTGAACAATTTTGAAAACCTCTCAATCTCGTAGC
GTTCATTTAACTTCAAGACGGTTCCAGGAGTCTGTGTAGTTGTGTCTCCC
AACTCTTTACGGGGAGAAATGTATAATCTTATGTTTCTTGTTATCTGTTA
GAATAAGCCATCAACTAATCCAAAAGAAACTAAAAGCAAAAGCTGGACGC
ACTTTCCATTATCAAACAGTACTGTACAGAGCTAGATATTTTATTGATTT
GGCTATTCTGACATTAATTCTTTGTTCAGTCACACAGGCAAAATGGTTGC
CCGGTAAGCCAAGTGAACCAAAAGAGGAGGACGACGGAAGTACCACCGTG
GTTTTTGATTTCGAAACAGAACATACTTTCCACGAAGTGAACATCGTGGA
CGAGTCCGTGAAGTCATTTACCTTAGAGGTACTGAGTTTTGTTTAGCGGT
ACTGACATTTGGGTTAAGGGCATGGTTTAGATATATCTTATATTTGAAAA
TATTACAGGTGTGATCCATTATCCTCAAAGCATTAAAAGCAAAAAATGTA
ATTTGCGGAGGGCCCAAAAGGGGGCATCGCGACACGTATTTTCTATCATA
TCATGTTCCTCAAAACATCAAAAGCGGAAATCATTTCTGTGCATTAACTT
TACAAAATCCTTAAGACTTGATGCTTCTACTTGCTGAGAAAAGCAAGCTT
CAAAATAAAATCAATTCGACATCTTCAATTCATACACTTTATACAATACC
ACTAAAAAATCCTCAATTGATCTCCCTTTAACCAAAGGTTGCCACTGCCG
AACAACCGGACACATGGACTGTGGTGACAGCATTCGACAATGTTGAGCCG
CAGGATTACTCTGGCTTCGTGGTGACAACGAGGTACATGCGCATTGTTGT
GACTGAAACGTATGAAGGCAAGAAGACAACCCTAGCCAGCACAACGTTCA
GCGGAGCGCCAGGTAACTTTGGGATACATAGTTAATGGGACCGCTGTAAA
ATAAGACAATCGTACATATTAAGTGTAAATGCGTTAACGTGGACAACGTA
AATTCTAAATATTATCAGAGCAGTATCTGAATGTCCAAAAAATATAAAGC
TTGTCACATCTATTACTAGTGTAGTGAGTATAGTACATGACACAACCTTC
TATTCTTTATATCACTAAATCTATATTGCCACTGAGAGGACGAGAAGACT
ATTCCTTTCAAAATAACATAATATCTCCATTCGTTCTTCAGGAGGGCTGC
CTGTAACTCCACTACTTGAAGAGCTGGAAGAAGGCGAACCGGAGGAAGGA
GAGGAGCCTGGGGAGGAAGAACCTGAGGAGAGCGGAGAAGAGCCTGAGGA
GGGCGGAGAAGAACCTGGGGAGGGTGAAGAAGAGCCTGGGGAGGAAGGAG
AAGAGCCTGGGGAGGAAGGAGAAGAGCCTGGGGAGGAAGGAGAAGAGCCT
GGGGAGGAAGGAGAAGAGCCTGGGGAGGAAGAGCCCGGGGAGGAAGGAGA
AGAGCCTGGGGAGGAAGGAGAAGAGCCTGAGGAGGAAGAAGAGCCTGAAA
GCCCAGAAGGTGGAGAAGGCTCAGAAGGAGCACCCGGCCCTGAGGGTCCA
GAAGGTGGAGAAGGCCCTGAGGGTCCAGAAGGACCAGAAGGTGCACCCGG
CCCTGAGGGTCCGGAAGGTGCACCCGGCCCTGAAAGCCCAGAAGGTGGAG
AAGGCCCAGAAGGAGCACCCGGACCTGAGGGTCCAGAAGGTGGAGAAGGC
CCAGAGGGAGCACCCGGCCCTGAGGGTCCAGGAGGTGGAGAAGGCCCAGA
AGGTGCACCCGGCCCTGAGGGTCCAGAAGGTGGAGAGGGTCCAGAAGGAG
CACCCGGCCCTGAGGGTCCAGAAGGTGGAGAAGGCCCAGAAGGNNN Coding sequence (CDS) from alignment at Sc0000077:933364..944459- >transcript:BL97033_cuf7 ID=transcript:BL97033_cuf7|Name=transcript:BL97033_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=2046bp|location=Sequence derived from alignment at Sc0000077:933364..944459- (Branchiostoma lanceolatum)
GAAGAAAGACCAGAAGAGGAAGAGGAAAAGCCAGAGGAACCAGAGGGAAA
CCGTCCTGACCTTGTACAATTAGTGGAGACTACCAAACTAGTACAAACGT
TGGATTGGCTGCCCACCAATCCGAAGTGGGCTATAGAGGCATCAGGTGTC
CCAAAAGAGGAGGACGGAATCGTCTATGATCCGCCAAAGATCCTCGACAG
CGACGGACAGACATACTGGGCGCCACAAGGCTTGGAAAGGTACTTCAATG
AGTGGTATGTAGTTTTCGACTTGGAAACAACGCACACAATCGACAAGGTT
AGTCTGACACATCTTGGCGATACGGTACATGACATTAAAACTTTCACCAT
GTCGTACGCGACAGAAGAGGATCCAGATACCTTCCTGCCAATCAAATCAT
TTGAGGGAGTTCAGCCGGAAGTCAACGATCCCCAGGAGTTCGCAGGATTT
CTCACTCCTGCGCGTTTCTTCAAGATCACTATCACTGGAACATACCAAGG
GTACGAGCCATACCTTGCCGGACTTGACTTCCACGGTGTTGAAGGAGAAT
TACCCGAAGACCTCGACCCTGACAGCGTACTGGAAGATACAGGACTTGAC
GTTGGTGATCTAGTGGCCATTGTTCCCATCGTGGCGGCTGCTGATTGGCT
ACCCAAACCGAAAGCTCCTGTCGAACCTGTCGAGGAAGATGGCATCACGT
ACGTAGAATTTGACTACGAGATTACGTACACAATGGACAAGATTGAAATC
TCCGACACCACAGTGCAGTCGTTCACTCTGGAGACCTCGACCACAGGAGA
GCCAGACACTTGGGAAGTTGTGAAAACAGTCGATGACCTACCAGAAGAAC
CTGACCAACCAAGGCAGGTCACCGGCTTCCTGGTCTCATCGCGCTTCTAC
CGCATTACCGTCACGTCTACATATGAAGAGAAGAAACCGGATTCCATAGC
GGTTACCACTTTCCACGGTGTTGAAGGAAAGATTCCTAAAGGGGTTAACA
CGGAAGACATCGAAGACCTTCTGGCCGACAAGATAGACATGGAGACTATT
GAAGAGGTGGTTGACAAAGTCACACAGGCAAAATGGTTGCCCGGTAAGCC
AAGTGAACCAAAAGAGGAGGACGACGGAAGTACCACCGTGGTTTTTGATT
TCGAAACAGAACATACTTTCCACGAAGTGAACATCGTGGACGAGTCCGTG
AAGTCATTTACCTTAGAGGTTGCCACTGCCGAACAACCGGACACATGGAC
TGTGGTGACAGCATTCGACAATGTTGAGCCGCAGGATTACTCTGGCTTCG
TGGTGACAACGAGGTACATGCGCATTGTTGTGACTGAAACGTATGAAGGC
AAGAAGACAACCCTAGCCAGCACAACGTTCAGCGGAGCGCCAGGAGGGCT
GCCTGTAACTCCACTACTTGAAGAGCTGGAAGAAGGCGAACCGGAGGAAG
GAGAGGAGCCTGGGGAGGAAGAACCTGAGGAGAGCGGAGAAGAGCCTGAG
GAGGGCGGAGAAGAACCTGGGGAGGGTGAAGAAGAGCCTGGGGAGGAAGG
AGAAGAGCCTGGGGAGGAAGGAGAAGAGCCTGGGGAGGAAGGAGAAGAGC
CTGGGGAGGAAGGAGAAGAGCCTGGGGAGGAAGAGCCCGGGGAGGAAGGA
GAAGAGCCTGGGGAGGAAGGAGAAGAGCCTGAGGAGGAAGAAGAGCCTGA
AAGCCCAGAAGGTGGAGAAGGCTCAGAAGGAGCACCCGGCCCTGAGGGTC
CAGAAGGTGGAGAAGGCCCTGAGGGTCCAGAAGGACCAGAAGGTGCACCC
GGCCCTGAGGGTCCGGAAGGTGCACCCGGCCCTGAAAGCCCAGAAGGTGG
AGAAGGCCCAGAAGGAGCACCCGGACCTGAGGGTCCAGAAGGTGGAGAAG
GCCCAGAGGGAGCACCCGGCCCTGAGGGTCCAGGAGGTGGAGAAGGCCCA
GAAGGTGCACCCGGCCCTGAGGGTCCAGAAGGTGGAGAGGGTCCAGAAGG
AGCACCCGGCCCTGAGGGTCCAGAAGGTGGAGAAGGCCCAGAAGGN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000077 | genome | Sc0000077:933364..944459 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97033_cuf7 |
| Biotype | protein_coding |
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