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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97041_cuf1 >transcript:BL97041_cuf1-protein ID=transcript:BL97041_cuf1-protein|Name=transcript:BL97041_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
GIRGLTGRDGSKGEPGVPGFDGIRGAKGDIGGIGPRGKEGPKGDAGSVGP
VGATGMPGQVGPAGPRGPPGVEGTRGFPGSQGPTGQPGRSPSEEEVLRIC
ERAIDSHMKMLAASLAQQAAKRTVVMTRPGPPGPPGQPGPTGERGPGGMS
GPPGPQGNPGMPGERGSIGPSGPQGLPGDRGEPGYGIPGPIGAPGRAGRK
GEAGIGVPGNPGPPGPIGPVGATGALGQRGSPGSPGVCDPMSCLGLSPIR
SNKNNNKGPGK Run BLAST on NCBI mRNA from alignment at Sc0000076:236143..241215- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97041_cuf1 ID=transcript:BL97041_cuf1|Name=transcript:BL97041_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5073bp|location=Sequence derived from alignment at Sc0000076:236143..241215- (Branchiostoma lanceolatum)
AGGGAATCAGAGGGCTTACCGGCAGGGATGGCTCAAAGGGCGAGCCTGGA
GTGCCTGGTTTTGACGGTATCCGCGGAGCAAAGGTTAGAAATGCTTCGTC
TTTCTATTGAAATATCTTTGCTTATTTTTCCGTTTGTGCCAATGTGAAAG
GAATTTTATTTGAAAACAAATGATGTGTTAGTTTTTAAACATATAAGTTA
TCTCGGTAATTTTTATTACATTTTTCAACCTTGTTTGCAGGGTGATATTG
GTGGCATTGGACCCAGAGGGAAGGTATGTACAGAAACAATGGTAGTTAAA
GTTAAAATCCTCCCACACCATATGGTGTACAGGGCGGTGCCCATCCCCGT
TTCATAGCCCTGGGCCACACTGTGGTGCAATCACTGCAGCAGGGGGCTAG
TCCACTGGCAGTGGAGTGTGTTTAACTTCCTTACTGTTTCATAAGTATGT
ACCACTTTTATCAAGTCTTTGGTATGACTCAATACGCCTCTTGTCCAGAA
GTGTCCTACCGGGGAGTTGAACTCGGGCCTTCTGGTTCCAAGTAATCAGA
ACCAGATGTGGTAAGTAACAGAAGCGCAGACCACTACACCACAGGGACAC
AATGTACCAAACAAATTTAAGTCCGATTGCAGACTTTTTCCCTGCTCTGA
AATCTATCAAATATTACACCAAAAAGCCTAGTCCTCTGAGTAAATATTAG
CAATATGAAGCAACCTGACAGAATAAATGAAAAAAAGACAAAGCTTTAAC
AAGTTGGTACAATGGTTATAACTGTGTAACATGTTTCCCATAGGAAGGAC
CGAAGGGAGACGCGGGATCGGTAGGACCTGTCGGTGCGACCGGCATGCCT
GGACAGGTCGGACCCGCCGGACCTCGAGGACCCCCGGGCGTGGAGGGGAC
TCGCGGTTTCCCTGGATCACAAGGGCCTACGGGACAACCAGTAAATACAA
ACTTTTCTTTCACAGCCATACAAAATAACAGACAGAAATGACTAGGATGT
GTATGAAGACTTGTGTTTGTATCATTGGTTTATTCATTCTTAAATGTTTG
TTCATTTGAATGAGCTTGGTGAGCATAGGCAGCTTCTCAAATGAAACTGT
GCCTTACAATCAAACAATAACATAAATTCAAGCAAATATCTATGGAAGGC
AGTTATAAACAATTCCTTATGTGTATTTATGGTTCGCTGGTCCCATGGTT
AGTTTGTAAAGTCGAAAGTACACAGCTTCATGGGTTTGTCCTTGGTGCTG
AACAGACCTCCAATGATACATGTGACAATACATGATGAATTGTGCCTATC
CTCTGTTACCAGGGAAGATCACCATCAGAAGAGGAAGTGTTGAGGATATG
CGAGAGGGCCATTGACAGTGAGTTTGAGCTTTAGAACAAACTATGTCAGT
AATAAGTTGTAAATTGGTGATCATCGCACATGAAACATAAGCATATCTAA
AATATGACAAGGACGTGACATTCAGGAAACACGCACGTCTGACTATAATA
AGTCTTCCTCTGTTTCCAAATACTTTGGGAAAACCACTCTTTCTATCAAG
GATATGTAACCAAGGATAAATGATATATGAATAGTATGGGATAGTATTAC
TAGGCTACAAGAACTACATGCCAGTCTACATGCCAGCTTATCATCTATAG
GTGAGCCAAGCTTTTATTCCTTTCATCTATTCCACAGGTCACATGAAGAT
GTTGGCAGCTTCCCTTGCTCAGCAGGCAGCCAAACGTACCGTGGTGATGA
CCCGCCCTGGGCCCCCCGGCCCGCCGGGCCAGCCTGGTCCTACCGGAGAG
CGTGGGCCAGGGGGCATGTCGGGGCCGCCCGGGCCACAGGGAAATCCTGG
CATGCCGGGAGAAAGGGGATCCATCGGACCATCAGGTACAGTATCATACT
GCTGTTGGGTAGCCTCCATTGCAGATTCTCTTCCGGCTGATTTCTTTTTC
AAGTTACCGTTTTCTTATTACATTTATTTTTTTCTTCACCGAAAGGTAAG
ATAACGGTAACTTGAAAAAGAAAACAGCCGGAAGGAGTCTGCAACAGAGG
CTAGCTGTTGGGTGAATCATGGACATTTCTCAAGAAAGACATACTAAAAA
ATGATACACGTCATCCATTGGGCTTGTTCTACTATTGCTGTTATTGTGAA
ATAAGATTTTGTTCCACTCCTGTATTTCCAGCCTCATACTGCTGCTGGGT
GTATCATGGGCATTTCTCAAGAAAGAGACATTCAGAAGATAATACATGTC
ATCCACTGGACCAAACTTCTCAGAGCAGGTTGTTTGTAAGCTAGTTCTAC
TATTGCTGTTATTGTGAAATAAGATTTTGTTGCACTCCTGTATTTCCAGG
GCCCCAAGGATTGCCCGGAGATCGTGGAGAGCCAGGCTACGGAATACCAG
GACCAATTGGAGCGCCTGGGAGAGCAGGTAAAACGTACCTTCACAAATGA
GGACGGCATGTTCAGATGTGATTTCTGCCAGTCTTATTACCTAACGTTAC
TTACCATCTTTAAAAACAATCAAACATCAGTAAAATTCAGGTAGATATGT
ATTGAAGGAAGTAATAAATTATTCCATAATGAGTGTCCATCCCCTGATGG
ACCCATGGTTGCGTAACAGGTGATCATATTCAAATCTGCCATCAACCAAC
CACGTGTTACAGTTTGTTTGTTTAATTTTGGAATATCTGTAGTTTGGTGG
TTCTTTCCTTGGTGCTGTTTTGTACTCCATTTACTGAAGCCCAATCAATA
GAGTGCCTCATGCTGTGATGTTGCCAGTGGCTTTTCTCCACATCTTTTTT
ACTCATCTTCGTTACCCAAACTTTGCTCTTGATTTAAAGACACCTATGCT
TCTTTTCAGGACGGAAAGGCGAGGCTGGCATTGGTGTCCCTGGCAACCCC
GGCCCCCCTGGCCCCATCGGCCCTGTCGGTGCTACCGGAGCCCTCGGCCA
GCGCGGGTCCCCTGGCAGCCCTGGCGTGTGCGACCCCATGTCATGCCTAG
GCCTCTCACCAATCAGGTCCAACAAGAATAATAATAAAGGGCCTGGGAAA
TAACTGACCAATCCCAACGTAGGACAGCTGCCTCAGCATTGAATGACATC
TTGATTTCATTGGTTGAGAGTTGAATAGCAGGCAGCCAATGAGGATGTAG
GACAGGATGTCAATCAAGAATGAATTAGGAAGGAGAGTTGATTAGTACAG
GAATGACAATACTGTTGATGTGAGTAATGAGTAGGTTTTACTGATTGAAC
TATGGTGCTACTTCCATATACCTTAGTCAGATTTCCAAGTTTGCCTTTTA
TGGTGCTTTGTACATAACATTGTAGAGAAAGGTAACACATTTAGCATGTG
TGAGAGAAGTGGTGTAGTACTTCTTATTTGTGTGTCAGTTTTTTTCAATG
TCATAAACAAAACTCTGCCAGTGAAGAACATCACAAAGTATGTTATCAAA
TGAGGCCTTCTTTTTACCCTTCATGAACCTCAGCATTTCTTATTCCTATA
GTTTTGCTGCATCAGCTATTGACAACAGCTAATTGTGATAAAAATGGTTA
ATGCTTATATAGCACAATTGTGACAAAATTCCCATGACATCTAATGACAG
GGCTCTGTGTTTTGTACCTGACATATTAATGCTTACATTATTTTGTTTAC
CAGAGTCTTAGTAGTAAGCATTCCACGCTATGTATAGCTAGCTAACATCA
ACATGTGATTAGAATATTTTCATCTCTGAAACTTTTCCATTAGGACCAGG
CTATATACTTCCAAGCTCCTAGCTACCACACCCTTTAAAACAATTGCATA
CTGTTATGATTTACATGTACAGTATTTTACAGAAGTCTATGCACATGATG
AACTAGGTGGATTGTGGACTGAACTCTAGTCTCTATTTCTTGTGCTCCAT
TCCATAGTCATAGTACAGGTCATCTATTCTCAGAAATACATGCTACTGTG
TGTTGCCATTATTTTTTCTATTGTTACTACTCTACTCTCTCCCTATGAAT
ATATGTAAAGTTGTTTATTCTTGTTGTAAGAATTAATGGAGATATATTAT
CTGTAGTATACATGAATGGCTTAGAGATGGGAACCATTCTAGGTACATTG
ATCTATATAATCATGACAATTTGTAGCATTCACCCTCACTACATTTCAAA
GTTCACTTAGTCATGAGCAGTTTAGACCTGTAGCCGTTGAAACATATTTC
ACAAGCTTTAAAACAGCTACCACAGCCACATGTGATCCAGTATGGGTTAT
ACCAGTGGCAAGTATTGTGATAGTAACAAAGAGAATATCTGTTATTGGCC
GATTTTAGGTGGGATTGAATGCTAATATATCATTAAGGTTAGTGCTGTTA
GGGGGTGCAAGCATATTTAGAACTTCTATTGTGCCGTGTACGTAAATGGT
AATAGCAGCAGTTTTACCTTTGCTGTGTGGCCAGATCTTGTATTGTTTAC
CAATACCAGCTCAGACAAGGTTTTTTTATCAATTATTAGTTGGCACAGAC
TTTTACAGGCTGTGACGTAGTAATGGTTAGATGCATATGCATAGTCAAGG
TCTTACCGCAAAGCCTTCTTAACTGATTTCGATATGCGTATATGACTAAT
TAGAGCATCATATCAGTCATGTTACATCCAATACAAGTGTAAACTGACCA
CACGGCGTTAAGATACAGGTCTTCACTGAGATATTAGCTGTCATCATCAC
ACACATCATTAGGCCAGTTAACCTTCTCCCTGCTGACTTCTGCTGTAACC
AATACAAACTTGGGTGCATTGATGAACCCACAGCGGGGTGAGGGTTAAGT
AGTGACATCAACATTTTCAGCCATTCATTTTCACTCTTCTGGGAACATAT
TTTTATCATTTTGTATGGTTTGATGGGGATTCATTATTTGGAGAATATTT
TAATGATTGTTATTACTATAATTAACTTGATATGAGAAGTGCTTGCCAGT
GGGCTTTTGTTACCTTGTATGTGGGATATATCTTGGTACAGTAGTAGCAG
GATGGGTGGACGTGCCTTTTGTAAAGCATTAAAATCTAGCGTTTCTTTTC
TTTTCTTTCATACTTTGTTTGAG Coding sequence (CDS) from alignment at Sc0000076:236143..241215- >transcript:BL97041_cuf1 ID=transcript:BL97041_cuf1|Name=transcript:BL97041_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=786bp|location=Sequence derived from alignment at Sc0000076:236143..241215- (Branchiostoma lanceolatum)
GGAATCAGAGGGCTTACCGGCAGGGATGGCTCAAAGGGCGAGCCTGGAGT
GCCTGGTTTTGACGGTATCCGCGGAGCAAAGGGTGATATTGGTGGCATTG
GACCCAGAGGGAAGGAAGGACCGAAGGGAGACGCGGGATCGGTAGGACCT
GTCGGTGCGACCGGCATGCCTGGACAGGTCGGACCCGCCGGACCTCGAGG
ACCCCCGGGCGTGGAGGGGACTCGCGGTTTCCCTGGATCACAAGGGCCTA
CGGGACAACCAGGAAGATCACCATCAGAAGAGGAAGTGTTGAGGATATGC
GAGAGGGCCATTGACAGTCACATGAAGATGTTGGCAGCTTCCCTTGCTCA
GCAGGCAGCCAAACGTACCGTGGTGATGACCCGCCCTGGGCCCCCCGGCC
CGCCGGGCCAGCCTGGTCCTACCGGAGAGCGTGGGCCAGGGGGCATGTCG
GGGCCGCCCGGGCCACAGGGAAATCCTGGCATGCCGGGAGAAAGGGGATC
CATCGGACCATCAGGGCCCCAAGGATTGCCCGGAGATCGTGGAGAGCCAG
GCTACGGAATACCAGGACCAATTGGAGCGCCTGGGAGAGCAGGACGGAAA
GGCGAGGCTGGCATTGGTGTCCCTGGCAACCCCGGCCCCCCTGGCCCCAT
CGGCCCTGTCGGTGCTACCGGAGCCCTCGGCCAGCGCGGGTCCCCTGGCA
GCCCTGGCGTGTGCGACCCCATGTCATGCCTAGGCCTCTCACCAATCAGG
TCCAACAAGAATAATAATAAAGGGCCTGGGAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000076 | genome | Sc0000076:236143..241215 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97041_cuf1 |
| Biotype | protein_coding |
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