transcript:BL97057_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97057_cuf0
Unique Nametranscript:BL97057_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97057_cuf0

>transcript:BL97057_cuf0-protein ID=transcript:BL97057_cuf0-protein|Name=transcript:BL97057_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=321bp
MMEIPGTGMEWDYSDDEGEEMEQDAPVEKKVSVHACNTWNELRKNGQLCD
VRLRVEGVEFPAHRTILAGCSQYFRALFTNGCTESAMSVIDIPGISAEML
ELILEYAYTRDVHVNEANVQELLPAADQFNINGIVKECCKFLRRHLSPEN
VIGIREFSKSYFCPGLEKACYDFVITKFPDVMAGAPNEELQLLSVEDFEN
ILADDYLNAKDEEFVFEGLVHWVNSDFPARVEYVPRLFQKVRVGLLNPDY
FMSKVKTHELIKDNEACKPRVVDAVKFFYDLELSNQALNDFTHPLAIPRI
PYEVLFAVGGWSDRSPTPVVE
Run BLAST on NCBI

mRNA from alignment at Sc0000022:2529608..2533322+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97057_cuf0 ID=transcript:BL97057_cuf0|Name=transcript:BL97057_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3715bp|location=Sequence derived from alignment at Sc0000022:2529608..2533322+ (Branchiostoma lanceolatum)
TAAGAGAAAGACATTTCCTGACCAATCAGCATGGCCGGTCCAGGTCATCA
GAGGTCACACCAACCTGAACCGTAGAGAAAGCGTCATTCGCACTTCTAGA
ACATTATTTTTCGCGGGAGAGTCGCTATGGGGTGTTTGCGGGACAACAAC
ATATCACGTTGACTGTTGTTCTAGTCGTTGAAATCCCGCAGAATCAAGTT
TTATACTAAGATACAGACTTCTCAAGCCGACAAGCGGTACAAATATCGTA
AACATGATGGAGATACCCGGGACCGGAATGGAGTGGGATTATTCTGATGA
CGAGGGGGAGGAAATGGAGCAGGATGCGCCCGTGGAAAAGAAGGTACAAA
GTTTGATATTATCCCTATGTAATCATAGGAACAAGCAGGGAACAAGGAGG
GAGTTCCACGCTGAAAGCGTCTTTTCTAGAACTACATCGTTATGGAACAA
GCTTCCTCGTGATTGCTTCTCTAATGGTACAACCCTGAAGTTTTCAAGTC
AGAGGTGAACAAACATCTGTCATCACATATCAGTACAGTAACCCAAGACA
TTTGATTGCCTCTTATATAGAGCCTAGATTTGTGGTGAATTTGAAGTAAC
TGAGAAAAAGAAACATCGGATTTCTGTGTCACAATGTGACGGTGCGGCCA
TATTCGTCCTAGGTCGTCGTGCGATTTTAAATTTTCAAGCATACTGTGAC
GGAACCAACCTCCAGCACGTTATAATACCATCACACTTTGAAAGTTTATC
ATGTATTCGTACTACATTCAAACTGCATTCTGTGAAACGTGTATAAATGT
GTACTATTTCTAGGTGAGCGTCCACGCGTGTAACACATGGAACGAGCTGA
GAAAAAACGGTCAGCTGTGCGACGTGAGACTGCGGGTGGAGGGGGTGGAG
TTCCCGGCACACAGGACCATTCTGGCCGGCTGCAGTCAGTACTTCAGGTG
GGGGCATGGGGTTCTTTTCCGCTAGTGTATACATTTATCCCATCAAGCGG
CTTCTCCCGGTGCTCAAGACTATATTGTGGACACCTATGTGAAAATCATC
CGCATTCCTTTGAGAACTTTGGCATGTACATTACAAATTACTACTTACTT
TTCATTTGAAGTGATGAATTCTTTATGACTGTCCATGCACAGAGCCTTGT
TCACCAACGGATGCACGGAATCTGCCATGTCAGTCATCGACATCCCAGGT
ACGAACACAGATGGTAGTACTCTAAGTAACTGTAACTTTTTGTCTTTGAA
ATCATAGCAAAGAGCAGTAAGATGCTTGTACAGGTTTCTGCAATCTTTCG
ATGCAATTAACACCCCAAAACATTCCGTAAATGTATGATTTTCACACAAT
TTCTCTTGTCGTAATCTCCGATAACATTGTTCACTCCCTTTCCCCATACA
ATCCTTTCTTGAAAATTACCAATAACTATGATCGATCGAGCAATCTGTTT
ATTCATTGGCTTATTGATTACAGGTTTGCAATTACAGGCTTATTGATGAT
ATGACTAATTTTTGGACCCCAGGTATCTCCGCTGAAATGCTGGAGCTGAT
CCTGGAGTACGCATACACACGTGACGTGCACGTGAACGAGGCTAACGTAC
AGGAGCTCCTCCCAGCGGCAGACCAGTTCAACATCAACGGCATCGTCAAA
GAGTGCTGCAAATTCCTCAGGCACGTAAACTTCAACTTCAACTTGGGATT
ACCCCCAGATAACCCCGTAAGAGGGGCAAGTAGGGCAAGGGCTAGGTCAA
AGAGTGCTACAAATTACTCAGGCACTTAAACATGTTATATTGTACGTTGT
GAACATTAGACATCCAGGTCACGTGAAAGAAGAATAAGATTGACTCTTGT
CACTTGCAGACGTCATCTGAGCCCTGAGAACGTGATCGGGATACGAGAGT
TCTCAAAGAGCTACTTCTGCCCTGGGCTCGAGAAGGCCTGCTACGACTTC
GTCATCACAAAGTTCCCGGATGTCATGGCTGGTGCTCGTAAGTTTACCAA
CAATACGGTCGTCAGTGTAGCTGTCTGTCCGTTCGTTTTTGTTTGTTTTT
TAAACATATACTTTGTTGCTAATTTTTTATTTGTATAGCTGTACCGAGCA
TGGATGTACAATGATGATGATGATCCACTGTATTCTGCGGCTCGGAGGTT
GTGGAAACAGCCTCCGGCTGCATTCAGTCTTTCTTCATTTCTTTCCACTG
TGTCTTCTTTTCTCTGCGAGCAGCCGTAGCTCTCTGAGTTTCTTTGCTGT
TCTTAGGTTTCCCATTCCTTTGTTCTTGAGATCAGTTTTTAGGACACTTA
GTAGGTTCGTGCAATGTCTTCCTTTCCTGGCCTTGTATTTGAAGTACAAT
GAAGCTTATTATTATTATCATTTAGTCTCTCATGGTACAAATATTTTGCC
AGTCCTTAGTACAGTTGTCACTGTTAACCATTCTGTTTTTGCTTGTTTTA
TAACCGAACACTTACAAACGCAAGTGAAGATGTTAACGTATAATAACAAT
GGCAAGAAGAGCAATTCAGTGCAGTAACTATAAAGAATATCTATTACTTT
CTTCTTTCATTAGCTAATGAAGAACTGCAGCTTCTTTCCGTGGAAGACTT
CGAGAACATCTTAGCGGACGACTACCTGAACGCCAAAGACGAGGAGTTCG
TGTTCGAGGGCCTGGTGCACTGGGTCAACTCCGACTTCCCGGCACGGGTA
GAGTACGTGCCGAGGTGGGGAAAACTTATATTTCTATTAAAAAAACAATA
TTGTTGGAGTCAACTGTATACCTTACATCACTTGCAATGTATATAGTATG
CTGAAACATCAATGGGAACATAACATCAAGCATGCTACTCCAAAGTGTAA
TTTTCAGTACTTATGTCGGTATTGAAAAGGGGTTACTTCGTTCATGTAGC
CATCATTCTGACTACGACCGCAACTGGGGAATCAAACTGCATCAAAAGTC
AACCATATTCAGTGTTGTGTATTATATCCAGCAAGCGTCCAATTGAAAAA
AATTCAAACCAATGTTTAACCAAGAAATTAGATCATTATGATGACACCCA
GTTCTTCTGATTAAAAGTTTTTTTGGGCGAAACTTCAGGAGCCAGCCTAA
TGGAGTATATCATTCTGTTTGAAACAGATTGTTCCAGAAGGTGCGTGTGG
GCCTGCTGAATCCTGACTACTTCATGAGCAAGGTCAAGACTCACGAACTC
ATCAAGGACAACGAGGCGTGCAAGCCGCGAGTCGTGGACGCCGTCAAGTT
CTTCTACGACTTGGAGCTCAGTAACCAGGTCTGTATCGAAACATCGGAGT
CAAAGAAAACTGAAGTATAGTATTACTCAAATACACCGAATTCATGCAAA
ATTCATTTTTGAAGACTTGCTGAATCTATGACAAAGGGCTATGTCCGAAT
GGGTATGTTTTGTGCATTATGCATCCTGGAAATTAAATCCTTTTGTTGCA
AATATGAAAATGGGACACTAAGTTTCTGACTAACATACCAGAAAACGGCA
AATACCAGTAGCAGTAGTACTGTAGGTACAGGTATGCATACAGGTTACAA
TTGTATCAAAGACTGTGAACGTTTAGCATTGATGTTGACTTGAATTGATA
TTTTTCCAGGCACTCAATGACTTCACCCACCCGCTGGCCATCCCGCGGAT
ACCGTACGAAGTTCTGTTTGCCGTCGGGGGTTGGAGCGACCGGAGCCCGA
CTCCCGTTGTCGAGA

Coding sequence (CDS) from alignment at Sc0000022:2529608..2533322+

>transcript:BL97057_cuf0 ID=transcript:BL97057_cuf0|Name=transcript:BL97057_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=963bp|location=Sequence derived from alignment at Sc0000022:2529608..2533322+ (Branchiostoma lanceolatum)
ATGATGGAGATACCCGGGACCGGAATGGAGTGGGATTATTCTGATGACGA
GGGGGAGGAAATGGAGCAGGATGCGCCCGTGGAAAAGAAGGTGAGCGTCC
ACGCGTGTAACACATGGAACGAGCTGAGAAAAAACGGTCAGCTGTGCGAC
GTGAGACTGCGGGTGGAGGGGGTGGAGTTCCCGGCACACAGGACCATTCT
GGCCGGCTGCAGTCAGTACTTCAGAGCCTTGTTCACCAACGGATGCACGG
AATCTGCCATGTCAGTCATCGACATCCCAGGTATCTCCGCTGAAATGCTG
GAGCTGATCCTGGAGTACGCATACACACGTGACGTGCACGTGAACGAGGC
TAACGTACAGGAGCTCCTCCCAGCGGCAGACCAGTTCAACATCAACGGCA
TCGTCAAAGAGTGCTGCAAATTCCTCAGACGTCATCTGAGCCCTGAGAAC
GTGATCGGGATACGAGAGTTCTCAAAGAGCTACTTCTGCCCTGGGCTCGA
GAAGGCCTGCTACGACTTCGTCATCACAAAGTTCCCGGATGTCATGGCTG
GTGCTCCTAATGAAGAACTGCAGCTTCTTTCCGTGGAAGACTTCGAGAAC
ATCTTAGCGGACGACTACCTGAACGCCAAAGACGAGGAGTTCGTGTTCGA
GGGCCTGGTGCACTGGGTCAACTCCGACTTCCCGGCACGGGTAGAGTACG
TGCCGAGATTGTTCCAGAAGGTGCGTGTGGGCCTGCTGAATCCTGACTAC
TTCATGAGCAAGGTCAAGACTCACGAACTCATCAAGGACAACGAGGCGTG
CAAGCCGCGAGTCGTGGACGCCGTCAAGTTCTTCTACGACTTGGAGCTCA
GTAACCAGGCACTCAATGACTTCACCCACCCGCTGGCCATCCCGCGGATA
CCGTACGAAGTTCTGTTTGCCGTCGGGGGTTGGAGCGACCGGAGCCCGAC
TCCCGTTGTCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97057gene:BL97057Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97057_cuf0transcript:BL97057_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97057_cuf0-E1BL97057_cuf0-E1-1564476830-152358Branchiostoma lanceolatumexon
BL97057_cuf0-E2BL97057_cuf0-E2-1564476830-152360Branchiostoma lanceolatumexon
BL97057_cuf0-E3BL97057_cuf0-E3-1564476830-152362Branchiostoma lanceolatumexon
BL97057_cuf0-E4BL97057_cuf0-E4-1564476830-152364Branchiostoma lanceolatumexon
BL97057_cuf0-E5BL97057_cuf0-E5-1564476830-152366Branchiostoma lanceolatumexon
BL97057_cuf0-E6BL97057_cuf0-E6-1564476830-152368Branchiostoma lanceolatumexon
BL97057_cuf0-E7BL97057_cuf0-E7-1564476830-152370Branchiostoma lanceolatumexon
BL97057_cuf0-E8BL97057_cuf0-E8-1564476830-152373Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000022genomeSc0000022:2529608..2533322 +
Properties
Property NameValue
Transcript idBL97057_cuf0
Biotypeprotein_coding