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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97068_cuf3 >transcript:BL97068_cuf3-protein ID=transcript:BL97068_cuf3-protein|Name=transcript:BL97068_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=582bp
CDMGYQRTSAENPVCGKNAMWRFITEGNTSEDLNNNRDQPDLFCERKDCG
LPQNPQNGSINCTGTRYQDYCLLDCDPWFKNADENSAILHSLHKYTCMAG
SNWSEQPRCTPSNYCLLKRHNCHAEHGICDVTGHQMYSCRCRAGTFGDGI
NCERLMCPPLPVATPPNGFFTCARHETTVVDAVMQPNFCSTTNETSVDEE
QEYEVSCVLHCSHGFKQNLFVEYWCSSDGNWTIPHDLNNVEDDVCVDIDE
CNYNNGGCAHNCVNSIGSYHCTCMTGYQLYGKHDCNDVNECARQNGGCDH
YCVNTEGSYHCTCQLGYQLSGTTRCDRVRCATLSLPNGRVLSCTDHSFYG
SQCTFRCNTGYYMAEPTTPQCRLDSTWSASVPRCVVCNSAVDIIMAVDIT
GSVAPDMDQVRQLLHNLVNRLPIGSGTNQARVGLIRFSDYNDEVTIPLSQ
STDKTTLRNQIDTVTSSSIGTSCGNNAGPSVGGQICALENLYVQFSNNRR
SDVKPIAVIVTDGDEVTPSPNAIAPAQTLRNSGVTVICIGVASVNINTMR
DMASLPFDDHYFTSSMSNLNELVDLLNPKICS Run BLAST on NCBI mRNA from alignment at Sc0000156:205182..210996+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97068_cuf3 ID=transcript:BL97068_cuf3|Name=transcript:BL97068_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5815bp|location=Sequence derived from alignment at Sc0000156:205182..210996+ (Branchiostoma lanceolatum)
CTGTGATATGGGCTACCAACGAACCTCTGCAGAAAACCCAGTTTGTGGAA
AGAACGCGATGTGGCGTTTTATCACAGAAGGAAACACGAGTGAAGGTATG
GGCCAAAATCTAAGATGTTGCAATTCATGAATTCATGCAAAAGGAAAATG
AAAGCTATCTGCAAAGTTCTAGATCTAGATCTGACCAACTGTTACCAAGG
ATACGTAGCAATGATGGACAAATAACATTACCTTGATGAATATGCATGGC
CTGGATTTTTTCAGACCTGAACAACAATAGAGACCAACCTGACCTGTTTT
GTGAGAGGAAGGACTGTGGACTTCCACAGGTACGTTTTGAAATTGTTATT
GAAGCTCAACATTTATGGTTATATATTGTAATTCATTTAGCATATACTAT
CTACAGATTATATCTAAGGCTCTCCACTAAAATGTATTACCTTCGTAGAA
CCCACAGAATGGCAGCATCAATTGTACGGGAACAAGGTACCAAGACTACT
GTCTGTTAGACTGTGACCCCTGGTTTAAGAATGCCGACGAGAACTCTGCC
ATTCTTCACTCCCTACACAAGTACACCTGTATGGCTGGCAGCAACTGGAG
CGAACAGCCAAGGTAGTGTTTTAAAACTTAATTATCTTCAGTAAAATCCA
TACTTCCTTAAGCTTGCTGTTAATACAGTGCGTAAAAATGTTTATTTAAC
GCCTATTACGTCTAAAACAGATGCACGCCGTCCAACTACTGCCTTCTGAA
ACGTCACAACTGCCATGCAGAACACGGTATTTGTGACGTCACGGGTCATC
AGATGTACAGCTGCAGATGTAGAGCGGGAACCTTTGGGGACGGAATAAAC
TGCGAACGGCTGATGTGCCCGCCATTGCCGGTAAGTATACATTAAACATA
TTCAGGCTAGTAGATGTCTTGCCAATTATGGCGGCCATTTTGACTTTCCC
GGGACCGTTCACCAAAACGAGGCTGCAGTTGGTGCTCCCTACCTACAAGC
CTGTATTACAGTATAGGTATGCCACCGTCGATGGCAACTCTCGCTCCTCT
TAGGTGAAATACCAAAGATGGCATACCTATACAGGCTTATAGATGAGTAG
TACCAACTGCAGCCTCGTTTTGGTGCATGGTCCAGGGAAATTGAAAATGG
CTGCCGTAATTGGCAATAGATCTATTGCAGGTTTGATACACTTCTTGCTC
GGCCATTCATCCACGCCTCTCATTTAAGTAATGATATAAATTTTGGGGTC
AGATAGTGGATCATGGAATGCACCACATTTTGTTTTGTACATAGGATTGA
AGTTTGAGTTTGTCCACGTTTGAAGTATGGACATGCTAGTGTTTTCTGCA
ACAACTAAGACACGTTTTAAATGTTGACGTCAGGTTGCCACACCGCCCAA
TGGATTCTTCACTTGTGCCAGGCATGAGACAACTGTAGTGGATGCGGTAA
TGCAACCAAACTTTTGCTCAACGACTAACGAGACGTCAGTTGACGAGGAG
CAGGAGTACGAAGTCTCTTGCGTCCTGCACTGTTCACATGGGTTCAAACA
GAACCTGTTTGTGGAGTACTGGTGCAGCAGCGATGGGAACTGGACCATTC
CTCACGACTTGAACAACGTCGAGGATGACGTTTGTGTTGGTATGGACAAC
AAACGTTAACAAATAGTTTACTTGATTATCTAATTTTGAATAGGCAATTC
TGATGGCTAAAAAAGCAATGTGAGTTCTGTTTTCTATCGATACAGGCCAT
TTTCTACAAGGAGATTTCTCATTGTGAGGACAATTAGCAATAGCATAACA
TTGAATGTAGATATGACCCAATACAGACAGCAAGTTGTGACCATATGAGC
TTAAGATCTTAAGTGCGTAATCTAAGCGTACACGAACTACCCTACATTTT
TGTATGCTTTTAACTCATTTTTTTCCAGACATCGATGAGTGTAACTATAA
CAATGGAGGCTGCGCCCACAACTGTGTGAACTCAATAGGCAGTTACCACT
GTACCTGTATGACCGGATATCAACTGTATGGAAAACACGACTGCAACGGT
AGATATCCTATCATTATGACATATACTTCTTCCTCCAGTCTAACTACGTG
CGATAATCAAAGGGGTGTTGGCCTGTAATGCTGCAGTACCTGTAAATGTT
GCTAGGAGGCTCAAAATTGTCAGGACACGTGGATACGTTATTCACTCCAT
TAGCTATCATACCAGGTTTCTTCGGGACCTCAATACCTATTCACCCACAA
AAATTCAGACCAATCCATCGACAGGTTCTCAACTAACAGATACCTCACTT
TGGAACTGACCCTCCTTCCCGGAGCTAAACATCTTTCGCAAGATCTATAA
ACTCCATGTAATATGATATTCTCTTTACAGATGTGAACGAATGTGCCCGT
CAGAATGGAGGCTGTGATCACTACTGTGTGAATACAGAAGGGAGTTATCA
CTGCACCTGTCAGCTAGGATACCAACTTTCTGGAACTACACGTTGCGATA
GTTAGTACCTTTTGTTGGATGTAATACTTTTGGTTGATATTGTCTGATCT
GCTTATTATGGTGGCCTGTGTAGCACAAAGTCTCACTGTCCAGGACCCTA
GTCTAAGGGGCCTGATCCCACAGCTTCTGAGGGCCGGACCAGTGGAGGAT
GTCAAGTTATGGTAGCACCAGAATTTATCTTGTCAGTACGAGACAATTTC
CTTCCTTTTGTTTCTGCCATATGTTGTGTGATCATGAAGATTGTAAGTAC
AACCTTCATTAAATAGACGAGCGATGTTCATTGGAACTCTAACATCCACT
ACCATAATACCGCCACGTTTACTGCAATTTCTAAAGTGATACAAATTTAG
CAAAGGAAAAACTCATTATTTTTTCCTGGTTACATGTCGATGTTATAGCT
TACCTTTGCCACTTATGCTGTGTATGTTTTTTTGTCTCTCTTGGTCTCCT
CAAAACGAAATATCGCAATCGTAAGATGTTACGGAAATGCACCGAGAACG
GGCGTGCGCACGGAAGGGGGTTCCATAATACCGCCAGGAAGAAACTCGGC
AATCATCTCCCCGTTTTTCACCATTATACATGAGCTGTTGTCCCTTTCTT
TCGGTATAGTGCGTGCCCTAAATATACAACGATGTCTGGGGATTAACAAA
ATCAGTCGAAAACGGATGTTAACTGTTGCGAATTTTGATTTACTGTAGCC
CGTCACAACTGCTATCACGTAAAACTTGCGTCTGGCGTTCTACTATGGTT
CAGTTCACATAATGGCGGCTTCGTTTTTAGTGTAACGGTCGTATTAATTG
TTGGTCTTATCCAAAAATTAGGATCGTCAAGATCGCAACTAGTCCCGCGT
GCCCGTCACCCCTCGTAATTGATATCTTGAGGGTTAAAGTTGATACGGCA
GGTCTACTATGCCGCTGGGTATGAATCAGGAGCAGTTCTCTCATGAGGCC
CGGCGGCCGCAATATTCGATCCAGTTATGGAAGAATCCCAAGTGTGCCAT
GCAAATAAAGACATTTTCTTTGGCTATTTATCACAGAACATTTATTGGTT
TCAGAGTAAATCTTTATTACTAATTTTCGTCTCCCATGCAAATACAAATG
GTATGGACGTGGGGTTCCCAGTTGCCGCGGAGGGGTGCAAGTTGTTTGAA
CAGCGGTTTGGGACCAAACAATAGAAGGGTTCATAATCCTACTATAGACT
GTTGTTCCTTGGCGAAAAATTAATCTATAGATATTATGCATATGGTGTGA
TGTATGTAGATGCAAAATATTTCCCAGTGCTTTGTAGAAATTACACCCGC
CCCTTCAAACTATTGGTTTCGCCGATATTTTCGCGGGGAATTTTCCTGTT
ACGCAATACGGGGGAGGAGCCAGTCTCGGGCGAAAACAATGAAAATGGCG
ACGTTCTATTTTGCGCCAGGTCAACCGCAGTTACGGCGATTAAACAACCG
TTCTTGACGATAGGTCACACTTTGACACGAGTTGAAGGCCAGTAAAAGAA
ACTTTATTTTGCTGTTGTTTAGATAATCGTCTTGAGCTTGAAGCACGTGC
GATTATTATATGCAAATCCAGCGAACAACGTGCGATGGCGTGATGTTATG
TTCTTCCCACGACGCGCTCGCCTGTCATGATAAGGGATCGAAAACATTTG
ACCTCGTTGTCTTCGAATGCCTCGTTGTTGAGGCCTTTCTTAGAGTGTAT
TAAACACCTTGATGTCTGAAGTGTGCATACCTCGGAAATCACTGTTGCTG
CACAAGTAGATCTCTTAAAATTCATCGCTTTTTAGATTTGGCGGTATTAT
GATTAGTGGCGGTATTATGGTAATGGATGTTACATTTACAAGTGGTAGAT
TATATCTGTAATCATATTAATACTATTCTTTTATTTCTTTCAGGAGTAAG
GTGTGCAACACTGTCCCTGCCAAATGGTAGAGTCTTGTCGTGTACCGACC
ACTCATTCTATGGCTCTCAGTGTACGTTCAGGTGTAACACTGGGTACTAC
ATGGCAGAACCTACCACCCCACAATGCCGTCTCGACAGTACTTGGAGTGC
AAGTGTCCCCAGATGTGTTGGTAAGTTGATTCTTCCAGTGCTCGTACAGA
TAAAGCTTGATATTTGCCGTCTTTGTTCTTTTATATGTTTTACATCAGTT
GCAAGGACAACTCGAGAGAGTATGGTATTGCACGTACTGTACATGGGTAG
AATTATACAGTACATCATGATGTACATGTAGTTTTATGCCAAACGTATTC
AACAATCTTATACATTGTCTCTAAATTCTTTTAGTGTGCAACAGTGCAGT
TGATATCATCATGGCAGTAGACATTACTGGAAGTGTCGCGCCTGACATGG
ACCAAGTACGGCAGCTCTTACATAACCTTGTCAACCGTCTGCCTATTGGA
TCTGGTACCAACCAAGCAAGGGTGGGACTGATTAGGTTCAGTGACTACAA
TGATGAAGTGACAATTCCCCTGAGTCAGAGTACTGACAAAACTACTCTTC
GGAACCAGATTGATACAGTAACGTCCTCTAGTATAGGGACATCTTGTGGC
AATAATGCTGGTCCAAGTGTTGGGGGACAAATCTGTGCATTGGAAAATTT
ATATGTCCAGTTTTCCAACAACCGTAGATCAGATGTGAAACCAATTGCTG
TTATTGTAACTGATGGGGATGAAGTCACTCCTTCCCCTAATGCTATAGCA
CCAGCTCAGACACTACGAAATTCAGGAGTAACGGTCATCTGTATTGGTGT
GGCTAGTGTCAACATCAATACTATGCGTGACATGGCAAGTCTCCCTTTTG
ACGATCATTACTTTACCTCCTCCATGAGCAATCTGAATGAACTCGTTGAC
CTGCTGAACCCCAAAATCTGCAGCTAATTTTTCAAGGCACTCTCATGTTA
ACAATGTGACTGAATTGTAAAAGTCCTGGTAACGTTAGACCTGCATATCA
TGATCAATCTGAATGAACTCGTTGAACTACTGCACCCAAAAATCTGCTGC
TCAAACATTTAAAGCTTATGACAGCAAGATTGACAATGGAGCCAATGACA
CTTGTTTAAAAACACTCGTTAACTATTATGCAGCATGTGTTAAAGTGTAT
TGGTCAATTCTTCTTTCAAGAGGACACAGGCACCATGTATGTCCCTTTGT
GTGGTAATATGTTTGAAGTGCCATATGGCAATCATTTTTGGTGCTGAGGT
GTTAATTTTAGTTCTAACGACTACTGACCTGGTGTTAGGAAATGTACTGA
TGTGTGTGTTTGTGTGTGTGTGTGTGTGCTTGTGTTTGTGTCAAAGACAA
CTACTGTAATTAAAG Coding sequence (CDS) from alignment at Sc0000156:205182..210996+ >transcript:BL97068_cuf3 ID=transcript:BL97068_cuf3|Name=transcript:BL97068_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1749bp|location=Sequence derived from alignment at Sc0000156:205182..210996+ (Branchiostoma lanceolatum)
TGTGATATGGGCTACCAACGAACCTCTGCAGAAAACCCAGTTTGTGGAAA
GAACGCGATGTGGCGTTTTATCACAGAAGGAAACACGAGTGAAGACCTGA
ACAACAATAGAGACCAACCTGACCTGTTTTGTGAGAGGAAGGACTGTGGA
CTTCCACAGAACCCACAGAATGGCAGCATCAATTGTACGGGAACAAGGTA
CCAAGACTACTGTCTGTTAGACTGTGACCCCTGGTTTAAGAATGCCGACG
AGAACTCTGCCATTCTTCACTCCCTACACAAGTACACCTGTATGGCTGGC
AGCAACTGGAGCGAACAGCCAAGATGCACGCCGTCCAACTACTGCCTTCT
GAAACGTCACAACTGCCATGCAGAACACGGTATTTGTGACGTCACGGGTC
ATCAGATGTACAGCTGCAGATGTAGAGCGGGAACCTTTGGGGACGGAATA
AACTGCGAACGGCTGATGTGCCCGCCATTGCCGGTTGCCACACCGCCCAA
TGGATTCTTCACTTGTGCCAGGCATGAGACAACTGTAGTGGATGCGGTAA
TGCAACCAAACTTTTGCTCAACGACTAACGAGACGTCAGTTGACGAGGAG
CAGGAGTACGAAGTCTCTTGCGTCCTGCACTGTTCACATGGGTTCAAACA
GAACCTGTTTGTGGAGTACTGGTGCAGCAGCGATGGGAACTGGACCATTC
CTCACGACTTGAACAACGTCGAGGATGACGTTTGTGTTGACATCGATGAG
TGTAACTATAACAATGGAGGCTGCGCCCACAACTGTGTGAACTCAATAGG
CAGTTACCACTGTACCTGTATGACCGGATATCAACTGTATGGAAAACACG
ACTGCAACGATGTGAACGAATGTGCCCGTCAGAATGGAGGCTGTGATCAC
TACTGTGTGAATACAGAAGGGAGTTATCACTGCACCTGTCAGCTAGGATA
CCAACTTTCTGGAACTACACGTTGCGATAGAGTAAGGTGTGCAACACTGT
CCCTGCCAAATGGTAGAGTCTTGTCGTGTACCGACCACTCATTCTATGGC
TCTCAGTGTACGTTCAGGTGTAACACTGGGTACTACATGGCAGAACCTAC
CACCCCACAATGCCGTCTCGACAGTACTTGGAGTGCAAGTGTCCCCAGAT
GTGTTGTGTGCAACAGTGCAGTTGATATCATCATGGCAGTAGACATTACT
GGAAGTGTCGCGCCTGACATGGACCAAGTACGGCAGCTCTTACATAACCT
TGTCAACCGTCTGCCTATTGGATCTGGTACCAACCAAGCAAGGGTGGGAC
TGATTAGGTTCAGTGACTACAATGATGAAGTGACAATTCCCCTGAGTCAG
AGTACTGACAAAACTACTCTTCGGAACCAGATTGATACAGTAACGTCCTC
TAGTATAGGGACATCTTGTGGCAATAATGCTGGTCCAAGTGTTGGGGGAC
AAATCTGTGCATTGGAAAATTTATATGTCCAGTTTTCCAACAACCGTAGA
TCAGATGTGAAACCAATTGCTGTTATTGTAACTGATGGGGATGAAGTCAC
TCCTTCCCCTAATGCTATAGCACCAGCTCAGACACTACGAAATTCAGGAG
TAACGGTCATCTGTATTGGTGTGGCTAGTGTCAACATCAATACTATGCGT
GACATGGCAAGTCTCCCTTTTGACGATCATTACTTTACCTCCTCCATGAG
CAATCTGAATGAACTCGTTGACCTGCTGAACCCCAAAATCTGCAGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000156 | genome | Sc0000156:205182..210996 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97068_cuf3 |
| Biotype | protein_coding |
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