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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97114_cuf11 >transcript:BL97114_cuf11-protein ID=transcript:BL97114_cuf11-protein|Name=transcript:BL97114_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=569bp
MFPSPVILGLCTVPVTMQHLFDECSSAYDEHTKETGAFERGWKRVRNTSA
MESEAPGWIHLPSAYPSLPIYGVTTQYWGDGFGLHLGKSADEMRSILAEL
KAHRWIDKRTRVIFLEAVLYNGNLDLFSSVTMVFEFSETAGVFSHHHVHT
FRLHQRPGTIGYIYVLLEIVYVIILLYTLWTEGKAARAAGLAYLMEPWNI
VEIFNFILAFTVIVLYGFKIMYSFKALMAIKEGKDLVHHFRSAVNISLVY
GWFLAFLTFVNMMKLLRLVRFNPFLSKLMSVFRGMAGEFCSFILYFFFWL
SAFGIYAYLMFGLSVTEYSTISKSFSTLFQMSLGNFYYYQLKEAAPILGP
IYFFAFISLIFLVLMNIAMAIIDSALPDVRNHDMPEDDQYFIQGLWERFT
AFFGFWKVPVTDDDSMAILHDSLIGVEIKVEKLWLKRESLFNLKMKDADL
PAEPEFVPVVKNVPDAAAVELHVRHRVIKVRPASSDNCTDNGSQATRSEN
KXSKMFPMLQQWNFMFATASSRSALPPRTTAQTTEVKRPALRTRLLWWWH
PGPRQNWRTPQETTNPTKS Run BLAST on NCBI mRNA from alignment at Sc0000052:1514599..1520641+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97114_cuf11 ID=transcript:BL97114_cuf11|Name=transcript:BL97114_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=6043bp|location=Sequence derived from alignment at Sc0000052:1514599..1520641+ (Branchiostoma lanceolatum)
AAAATCTACTGTAAAGGAAGCCTACAAAGTGAAGGGAAGACCAAAACAGC
AAAATGTAAACTATGTGACTGACTTTTCATGTTTCCTTCTCCTGTCATCC
TAGGGCTGTGCACGGTGCCTGTGACAATGCAGCACTTATTTGACGAATGT
TCATCAGCGTATGATGAGCACACCAAGGAGACCGGGGCATTTGAGAGGGG
ATGGAAAAGGGTCAGGAATACATCAGCGATGGAATCAGAAGCCCCTGGAT
GGATCCACCTCCCCAGCGCCTACCCCAGTCTCCCCATCTACGGTGTGACA
ACACAGTACTGGGGAGACGGCTTCGGTCTGCACCTGGGAAAATCAGCAGA
CGAGATGCGCAGCATCCTAGCAGAGCTGAAGGCCCACCGTTGGATCGACA
AGCGCACGAGGGTCATCTTTTTGGAAGCCGTGCTCTACAACGGAAACCTG
GATCTGTTCTCATCGGTGACGATGGTGTTCGAATTCTCCGAGACGGCCGG
AGTTTTTTCCCATCATCACGTGCACACCTTCCGACTTCATCAACGGCCAG
GGACGATCGGGTACATCTACGTCCTGCTGGAAATCGTTTACGTCATCATT
CTCCTCTACACACTGTGGACAGAGGGGAAAGCTGCACGCGCAGCCGGCTT
GGCCTACCTGATGGAGCCATGGAATATTGTAGAAATCTTCAACTTCATCT
TGGCATTCACTGTCATTGTCTTGTACGGCTTTAAGATAATGTACAGCTTC
AAGGCTCTGATGGCGATCAAGGAAGGGAAAGGTGTGTAACACATTTGTGC
TAAAATGTTACACTAATTACACAAAAATGTCACTTCAACATGCTTAATAT
TTGAAAACTTGCAAAATTGTCACTCTGACTGTATTACAAGGTTAATATTA
TTCAACACTGTACTTTTATTAATGATATGCATTACACTTCTCTCAAAGAT
CTAGTTCACCATTTCCGATCTGCTGTGAACATCAGCTTGGTGTATGGCTG
GTTTCTGGCCTTCCTGACGTTTGTCAACATGATGAAGCTCCTCCGGCTGG
TGAGGTTCAACCCATTCCTCTCCAAGCTGATGTCCGTGTTCCGAGGGATG
GCGGGGGAGTTCTGTTCCTTCATCCTCTATTTCTTCTTCTGGCTCTCAGC
TTTTGGCATCTACGCCTATCTCATGTTCGGTCTTAGTGTGACAGAGTACA
GGTGAGGAAATATGTTGTTCTATTTGTGTGAAATCTTTTCAATTTGATGA
TTTCTTCTTTTTTTTACAAAAGTGCTTGAAAGTAGAACAGTTCAGGTCAC
CGTTACAATCATATGATAAATTTTGACAATTCTTTCTTCTTTTTCAGCAC
CATCAGCAAGTCCTTCTCCACACTGTTCCAGATGTCTCTTGGAAATTTTT
ACTATTATCAGCTCAAGGAGGCCGCTCCTATTCTTGGCCCTATCTACTTC
TTCGCTTTCATTTCCTTAATCTTCCTCGTGCTGATGAACATCGCCATGGC
GATCATCGACAGCGCTCTCCCGGATGTGCGGAATCACGACATGCCTGAAG
ATGACCAGTACTTCATCCAGGGGTTGTGGGAACGCTTCACAGCCTTCTTC
GGCTTCTGGAAAGTGCCAGTCACAGGTAGCGTTGTATCATTTCACAGATA
GACAGTGCACATCCAACCAAGGCTGTCTATCATCTTTTGGGTCTTGATTC
TGTTGTTTCTGTGGCTACTGACACATGTACTATATTACTGCAACATTACT
GTTGTAAGCTCTTTCTTGTTGGCAATGCATTTTAGTATTTAAAGTGTGAA
TTTGGGACCTGAACCAGGACCTTTGCTCCATCACTTAGCTATAATGCAAG
TATGACAGGATAGGCAGCAGTAAGGTCCAAAGTTAATTCCTGTCCTGTCT
TTAGAACCACCCTCCTTAAGTCCCTTTGTATTCTCTGCCCCTTGCCAGCT
GGGCTTGACTGTTTTTGTACATCATTGTTGTTATGGGATGATTAAATTTT
GTTTATTTCATATGGAAATATACAATAAAAAAAACTTACTAAAACATTTA
CATCGGCCCAGATGATGACTCCATGGCCATTCTTCATGACAGCCTGATCG
GCGTGGAGATTAAAGTGGAGAAACTGTGGCTGAAGAGAGAGTCGCTCTTC
AATCTCAAGTAAGTACAACATCTTACAAGAAATACTGCTTGAGCCTGATG
CCCTTGAAGGTGCGTGAAATGATCTTCCTGCTACTGTATACTTTACAGCT
ACTGTAATTGTGATTAGAAAGAATAGACTGAAAAGTTGAAAGTGATAATT
ATTGAAAACAAACACTCAACANTGCTACTGGAACTTTACAGTACAGTAGT
TGTGACTTCTAGAATAGGCTTAAAACTTGAAAGTGATAATTGTAGAAAGA
TGTTAAAAGTTATAAACATTAGAGGTTCTAAGAAACTCCAACATTTCTAT
CCTCACAGGATGAAGGATGCGGACCTCCCCGCAGAGCCTGAGTTTGTCCC
GGTTGTCAAAAATGTTCCCGATGCTGCAGCAGTGGAACTTCATGTTCGCC
ACCGCGTCATCAAGGTCCGCCCTGCCTCCTCGGACAACTGCACAGACAAC
GGAAGTCAAGCGACCCGCTCCGAGAACAAGGNGTCAAAAATGTTCCCGAT
GCTGCAGCAGTGGAACTTCATGTTCGCCACCGCGTCATCAAGGTCCGCCC
TGCCTCCTCGGACAACTGCACAGACAACGGAAGTCAAGCGACCCGCTCTG
AGAACAAGGCTCCTGTGGTGGTGGCATCCAGGTCCCCGTCAAAATTGGAG
GACACCCCAGGAAACCACCAATCCAACCAAGTCGTAAAAATGAAGTCCAT
TCTTTCCAAGCTAGAAAAAATTGAGGAGTCAACCAGGAAAGTGTCTTTTG
CTCTGAACGTTCTTGTTCGTCACACTGAGGAGCATAAGGTGGAGTGGCCA
AGTGTCAAGTTGAGCGTTCATAACGAGATGGCTCTGATATACCTCCAGAT
GCTGACAGACGACCACATCCAGGCTGCCCAGATGCTGCTCCGCCGCCAGT
ACCCGGCACTCCAAGGGCTGGAGGGGCCTGCAGTTGGTCTCTGTGACGAN
CTTGTTCGTCACACTGAGGAGCATAAGGTGGAGTGGCCAAGTGTCAAGTT
GAGCGTTCATAACGAGATGGCTCTGATATACCTCCAGATGCTGACAGACG
ACCACATCCAGGCTGCCCAAATGCTGCTCCGCCACCAGTACCCGGCACTC
CAAGGGCTGGAGGGGCCTGCAGTTGGTCTCTGTGACGATGGGTTTGTGAA
GATGACAGGAAAGGGACTACAAATCCACCACAACAATCATCAGCACTGGG
TTCTGTCGTCTTACACAGACGGAAAGGTGTGCCTGTATGACAGCCTCAGT
GTCCCCATGACCCCATCTCTGCAGATCCAGCTTTACCAGTCCTACGCCGC
GTTTGCTGACCAAACAAGGAACACCCTGACCGTCTTCTTACCGGACGTAC
AGCGTCAGAGGAACGTCTTGGATTGTGGGCTGTTCGCCATCGCCTGGGCA
GTGGACATCGCAGAGGGGCAAGACGTAAGCAGGGTTGTGTATGACAACAG
GAAGATGAGGAGCCATTTGAAGACGTGCTTCAAACAAGGGAACCTCACAC
CGTTTCCACGCCTGACTGGCTTCAGAAAGAAGGAAGGTCGAAACAAGGTG
CAGCAAATCACACTGGTCTGCCACTGCGAGCAGGGGGAGCGTCTGGGAAG
GATGCAGAGGTGCAAGGCATGCGGGAGGATCTTTCACGTCAACTGCCTGC
CAGTCAACCCTCCCAGTGACGGCACATGGGTATGTGGAGACTGCGCTGTA
TAAACTGCAGCATAAGAAAGGACTGTACTGATGAAAATCAAGCATAACTG
ACATGTTCTCGTGATTGAAGTAAAGAAACAAAAGCACTCTAGGATGGAAA
AGCTGGCTGGTCACAGAGTCATGACAAAGTTAACACCATTACTGTTCAAT
TTTTTTTGTGTGTATTCATTTAATATTTTTTGATATTAGGGATTTAGTCT
AGGATCTATAGGAATTATGTCCACTTCAGTCTGTCCTCAGATCATGAAAG
TTTGAAAAGACTTTGTTAAGCAGATTTGCCTTGTTTAGACTTAACAGATA
CTTAATGAATGGTTTTATCATCATGTTAAATAATATTACAATGTTACGAA
TTGTGTGTAATGTCTTTGATTTGAAATAGTAAGAACTTGAGGACTTGTTT
TGTTGTATTTTTGGCTGCCGACAAAAAGGCAGTTTTGCTTATCAAAGAAA
CTATCACTATATCAGTAAATATCAAGTTGAACGAATATGTTACTTGTGTC
ATAAGATTTTGGCCATGAAGAAAAACTACTGCTTGAAAATATTGCGTGTG
CTCAATCAGAATTGCCTGAAAGCTTGATAGGAAGAGGAAATCAGCATTTG
TAACATCATGTGATAACAGGCCAAAATTTGTTCAAAACACCAGAAGAAAA
AAAGTTTCCTTTAAGAGTCTCATATCGATTCAGTTTACACTTTAAAACGG
CCCGCTCAGAAGAAAAAGAGAGCCAGTTGCATTGTTCACAGGATTAGTAA
CAAAAATATCAAAAGTAGGAAATATTTTGGGGAAAAAGTTCCTCTGGACT
GCCTAGAATGGCAGTTTTGGCTGTTCTGTTTGTGCTTTTAAAACAAATGA
AACTAAATAACAATGAATTATATATAATCTAAGGACACTACATATAATGT
AAAGCCCTTGACATGTCACTTGTGTCACCAAGATTTTTGTCCGGTAAAAA
AACTACTGCTTGAAAATATTGCATGTGCTTGATTAAATTGCATGGAATCT
TGTAGAGTAGAAGCATTAAAAAATCAGCAAGAAAGTACAAAATTTGTAAC
ATTATGCCACACTAATTCAATTGGTTGGTTCTCGGAATTGCCCCCATCTA
TTTTTCCTAATTTGAAAAAAAAAACTTCACCACACCTCCCATCCAGCAAA
TTTTTACTCACTACATTACTATAAAGACATTCAACAATTTTCCAGGGGCT
TTACCATGTGGGTAGATTTATCATTGCAGTAAAATGTTTCAACCAAAAGG
TGCAATTCTACTGTACAATAGTAGTACTATGATGAGTGGTTGTCTGCCAT
AGAATGTTTTTTCAAGCAGAAAAGTTAACTAGCCATATTATGTTTACACC
TATCCTCACCCCAGCCTTTTTGCAAAAATGTATTTTCGCATTATCTCTCC
ATATTTTTTTCTGAAAAAATCCGAGGACCAACAAATTAAAATGGTGCGGC
CTTATCTGATAACAGACCAAAAATTGTTATAAGACCCAGGGACAAGTCTC
ATATCAATTCAGGTCACATTTCAAGATGGTCTGCTCAGAAGAAAAAAGTT
GCATTTATTTCCAGAATTAGTAAGGCCATGTTGATTTGATTATATGGATG
ACATCCGTGTGCGCATCAATTTTCATCCGTTTCCAAAAAAAAAAAGAAGG
AAAAAGTTTTTCACCATACGGTAGATTGTGCAAAGCAGCTGCAAAATGAG
AATTATGTTGCTGTAAATTTCAACAACAAAAATTATTTCGGAGAATGGAT
ACTAATATCGTTGAATGCCAGGATCAATTCCAAAGTCAAAGATGATATGA
AAGAACAAAAATTAAGAACATATTATTTGGTATACCACACTTTGTATGTT
TACTCATTTGTTCAACCTTCCTGACCACGTATATTTCATAATGAATTAAG
GCAAGGTTTTTTTGGTCAAACCTTTTTTTATTCGCACACTCGCATCAGTT
TTGGGGTTCCTAGAGGATGTCATCTATATAATCAAATCAACATGGCCTAA
CATGTCCACAAACATGCCTAAATTTTTAAGAAATGTTGTCACATTACACA
AAATTCACAAGAAAGCATTTTGGCTAAATGAGAGGAAGTAAAAGACTACT
TCAAAATGACTTATGTCTATAATATACAGCAAAATTGTAAAGCGAAATAT
TTGTCCGACATTTTGATCTGAATAAAGGTTGATTGATTTGCTG Coding sequence (CDS) from alignment at Sc0000052:1514599..1520641+ >transcript:BL97114_cuf11 ID=transcript:BL97114_cuf11|Name=transcript:BL97114_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=1710bp|location=Sequence derived from alignment at Sc0000052:1514599..1520641+ (Branchiostoma lanceolatum)
ATGTTTCCTTCTCCTGTCATCCTAGGGCTGTGCACGGTGCCTGTGACAAT
GCAGCACTTATTTGACGAATGTTCATCAGCGTATGATGAGCACACCAAGG
AGACCGGGGCATTTGAGAGGGGATGGAAAAGGGTCAGGAATACATCAGCG
ATGGAATCAGAAGCCCCTGGATGGATCCACCTCCCCAGCGCCTACCCCAG
TCTCCCCATCTACGGTGTGACAACACAGTACTGGGGAGACGGCTTCGGTC
TGCACCTGGGAAAATCAGCAGACGAGATGCGCAGCATCCTAGCAGAGCTG
AAGGCCCACCGTTGGATCGACAAGCGCACGAGGGTCATCTTTTTGGAAGC
CGTGCTCTACAACGGAAACCTGGATCTGTTCTCATCGGTGACGATGGTGT
TCGAATTCTCCGAGACGGCCGGAGTTTTTTCCCATCATCACGTGCACACC
TTCCGACTTCATCAACGGCCAGGGACGATCGGGTACATCTACGTCCTGCT
GGAAATCGTTTACGTCATCATTCTCCTCTACACACTGTGGACAGAGGGGA
AAGCTGCACGCGCAGCCGGCTTGGCCTACCTGATGGAGCCATGGAATATT
GTAGAAATCTTCAACTTCATCTTGGCATTCACTGTCATTGTCTTGTACGG
CTTTAAGATAATGTACAGCTTCAAGGCTCTGATGGCGATCAAGGAAGGGA
AAGATCTAGTTCACCATTTCCGATCTGCTGTGAACATCAGCTTGGTGTAT
GGCTGGTTTCTGGCCTTCCTGACGTTTGTCAACATGATGAAGCTCCTCCG
GCTGGTGAGGTTCAACCCATTCCTCTCCAAGCTGATGTCCGTGTTCCGAG
GGATGGCGGGGGAGTTCTGTTCCTTCATCCTCTATTTCTTCTTCTGGCTC
TCAGCTTTTGGCATCTACGCCTATCTCATGTTCGGTCTTAGTGTGACAGA
GTACAGCACCATCAGCAAGTCCTTCTCCACACTGTTCCAGATGTCTCTTG
GAAATTTTTACTATTATCAGCTCAAGGAGGCCGCTCCTATTCTTGGCCCT
ATCTACTTCTTCGCTTTCATTTCCTTAATCTTCCTCGTGCTGATGAACAT
CGCCATGGCGATCATCGACAGCGCTCTCCCGGATGTGCGGAATCACGACA
TGCCTGAAGATGACCAGTACTTCATCCAGGGGTTGTGGGAACGCTTCACA
GCCTTCTTCGGCTTCTGGAAAGTGCCAGTCACAGATGATGACTCCATGGC
CATTCTTCATGACAGCCTGATCGGCGTGGAGATTAAAGTGGAGAAACTGT
GGCTGAAGAGAGAGTCGCTCTTCAATCTCAAGATGAAGGATGCGGACCTC
CCCGCAGAGCCTGAGTTTGTCCCGGTTGTCAAAAATGTTCCCGATGCTGC
AGCAGTGGAACTTCATGTTCGCCACCGCGTCATCAAGGTCCGCCCTGCCT
CCTCGGACAACTGCACAGACAACGGAAGTCAAGCGACCCGCTCCGAGAAC
AAGGNGTCAAAAATGTTCCCGATGCTGCAGCAGTGGAACTTCATGTTCGC
CACCGCGTCATCAAGGTCCGCCCTGCCTCCTCGGACAACTGCACAGACAA
CGGAAGTCAAGCGACCCGCTCTGAGAACAAGGCTCCTGTGGTGGTGGCAT
CCAGGTCCCCGTCAAAATTGGAGGACACCCCAGGAAACCACCAATCCAAC
CAAGTCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000052 | genome | Sc0000052:1514599..1520641 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97114_cuf11 |
| Biotype | protein_coding |
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