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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97119_cuf10 >transcript:BL97119_cuf10-protein ID=transcript:BL97119_cuf10-protein|Name=transcript:BL97119_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=267bp
YIPGSRGYPGQPGIPGPRGYPGPSGDPGPAGPRGPRGREGLPGADGLPGP
PGPGISIPLSMLGSLGMGSGCKGPGCNEAAMAEQIMAGMIGPPGPSGPVG
MAGRPGPSGLPGGPGPKGDVGEMGQMGPRGPRGPMGPPGKDGKRGRHGKD
GGRGQPGQDGLKGERGFDGLPGLPGQKGNRGGHGGPGPSGPPGDIGDKGD
DGERGLPGMPGEPGQRGLMGPRGPPGVQGPPGMPGNMGPGGLKGATGAPG
KPGAPGPQGLIGPPGSP Run BLAST on NCBI mRNA from alignment at Sc0000685:52509..61538- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97119_cuf10 ID=transcript:BL97119_cuf10|Name=transcript:BL97119_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=9030bp|location=Sequence derived from alignment at Sc0000685:52509..61538- (Branchiostoma lanceolatum)
TGTACATCCCAGGATCTCGAGGCTACCCAGGTCAACCTGTAAGTAAACTC
TATGTAGTCACAACTGATCCGATTTTTTTGGGGAAAATCTTTATTCCCCG
CAAGCACAAGTGACAAAGAGGTTCTACGTTGGTTGGGGCTAGTTGCTATG
TGCGACATTTGTTTACTGGGCAAGCAACAGGGGACAGGGGTACACAGTGC
CGGATTCCAGTGACCTCCAAATTTGGTCTCCTCTTTCATGTTCCCCTCTG
TGGCTCTGTCATGTCCAGGGCAGAGCATCAGAGTGTTTATCAAAGTGTGC
AGAACAAGATTCCTGCCTGTGATTCCTGTCAGCTTTGTTGTGTGGTTGGA
ATGTTTACAGCAAAGTCTGTCTTCAGTTATTTTGAATAACATGAAAACTT
AAGGACTTAAGGACAAAAAGTTGAAAGGTTAAAGAAGAGAAATACTAATT
CCCAGCATGTTCCTTGATAGATACATTGTATATGCAGTGCTTTAATGGTA
ATCACCAAGATACTCTTAACACTGCTTAAGTGAATATTGACCAGTTTGTC
TAAGAATTGTGCAACGGCATTTCCATAGTTCCTTTTAAGTGTAATTGAGA
GATAAACAACATTGTGATGTTTGCTTGCTACAGACCTAGAATTTTGGCTG
CAACCTTATTTGCTTTGCCTCCCTGCAGGGTATCCCGGGACCAAGAGGTT
ACCCTGGCCCGTCTGGAGACCCTGGTCCTGCTGGCCCAAGGGTAGGCATC
CCAATAAACCCATTGTTCCATTCCCAATGACCTTTACTGACCTTGAACCG
TGTCCAATGGCTGCGTTCAGGGTGTCCTAGAACTAAGTTGTTTTTGGATT
AAAGAGCTGTATTGTTTGCAATAAAATGCATTGAAAGAAATAGGGGATCG
CAAGATGCATTTGAGGTACACAATACACGAAAGACACTACCAAAATGTGC
ATAGTACGTATATAGTACGGCAACACGGGAGGATGCTTGCAGTATTTCCT
GTTGTGTATTGGGAAAGCAACTTCATGACTTCATTCAGGTGAAAAACATT
AGATATGATAAAACACAGCTTACATTGTATATGCAGAAACAATGCGCACA
AAAAACAGTGTACTTCATATCCAGAATTCAGAAAAATATCACATACTTTG
CTACAAATGCGCATCAATCAGTTGAGTCTCTGTGAGGATGACTATTCCCA
TGGTCTCTCCTGTCTGTAGGGTCCCCGTGGCAGAGAAGGTCTCCCTGGTG
CTGACGGATTGCCTGGACCCCCTGGACCTGGAATCTCCATCCCTGTGAGT
GATGTTGGGTTAAGTTTTAATCATATCGGAAGCATTTATAAAAGGCCAAT
GCTGAAATCCTTCAATATCTGCTGTAATGATGCGGTGGGACTTTCATATA
CTTGTAACATCTACTAAGTTAAACGTAATTCAACTAGAGACCCTGAAAAG
ATACATCCGAACAGATGTATATCTAAACTGTGCATACCTGGGAGTGCTGC
ACCAGAGATCTCTCAAATCCGCTGTGTTTTTTTTAAGTGGTGGATTTTTG
TAACCCGACAGATAAATATTTATGGAGGTTAGATCTATCTCTAATGCCTC
TGAATATTTCAATATGAATAAGTAAGTGAAGTATGAAATACATGTAAACT
AATATATATTCTTCAGCAATTTGCCCCGAATTGTAGGGTGTGTACTTTGA
TTAAGAAAATATAGTAGATACATATACATTGTACATAGTGGGTATTTTGT
TAGTTGTTTAACAGTACTGGTGCACTTGAAAAAAATGATCCAGATTTTGC
AGGTCCTTTGGTTAAGGCAGCTTTGAAACAGTGTGTCTGAAAGTGAAAGC
GGTGGGCCCTTTTGAAATAGACTCCATGAAGTGCACATGGACCTGTAACA
TCAGTTGGCAAGTGGTTTGCCATTGGTCACCCTTGAGGCACTATAAAATG
AAAGTGGTTCAGCTGTAAAGGGTTTTGAAACTTAACAGAGCTGCATTGTG
CTTTTGAGTTTTGTTACTGGACCTGGTGAAAAGCTCTAATTTCATAGCAC
CTGCAGGGAGGTCTGTGGTGAAAAACTTACCACTCCCAGTTGATGTTGCA
GATACAACTTTCAGTATTCTATTTTACAAGATCAGTTTTTTGCAGTTTTT
GCAGTACCTGCTTTTGAAATCCATTAATTGTTAATGTGTTAACTTCTTGA
GCATGTGTACTCGTCCCGTCTGCACGACTACTAACTTCAGAGTTTTGGTA
AAAAACCTCTCCAGTTCCTCCCTTTAGTCACTGACAAAAGACAGTGAATG
CTGTATGAAACGTCTGACTTGTTTCAAAATTTTATCCAGTTGCTTTGTAT
TTTGGCACAGCTTCAAACTGTTACTCAAGCCCCATTATGACACTAAGACA
AGAGAAGATAGCAAGGCAAAAAGAGTAGGAACACACAAAAAATGGCCCAC
CTGATGGTGTTTCAATGATGAATATTTGTTGCTTTGATTGACAGCTGTCT
ATGCTTGGGAGTCTGGGAATGGGTTCTGGCTGCAAGGGACCCGGCTGCAA
CGAGGCAGCCATGGCTGAGCAGATCATGGCTGGAATGGTAATCCAAACTG
TTCACTTGTCCTAGATTTGCACAAAAGTCAATTTTGTATGTTCTGGTACA
TGTAACTCAGTATAACCTAGATTTTCTATACAATAACCTGTACCCATTGA
GACATATGGGTGAAATAAAAATCTTTGATTCAATAAAGAAAAAAACTCCA
TGTATTTGCTACATTGTTCTGTCTATGGTGCTGATTTAGACATCATTTGA
TGTGGTTTTATACAGAGGCTATTTTAGTTGCATTGTTATTGAAGATTATC
TTTTGTCATGTTTTAGTACTGACATGAAAATAACCATAATCCAAAGTTCA
CTAATCTAACTTCTATGTTTGGATTGTGCTTTGGTGTGAAACCGTCTCTT
CACAGTTTTTCAGGTAATCATGACTACACAATTATAAGACACTCAAAACA
GATTTTTTTTACATATTTCCAAGGACAATCATCACTCACGTAATCAGTCA
CATGATTCTGAGTTTGCATTTGCTTGTTTATTCATATATGTATGTGTTGC
TGTGTTCTAGATTGGACCACCTGGCCCTTCTGGACCTGTTGGCATGGCTG
GCAGACCTGGACCTTCTGTAAGTACTGTCACGACATGAAACTGCTCCCGA
CAGATTCAATACATAAAATGTGTTGATGACCTTTAGATACTCCTTCTTCA
TAAAGAGAAAAGATAATAATCATACAGGAAGAAAGTTAGTCATTTGTATG
CATGAGTGATCAGTGCAAGGTGTCTCTAACCTCAAGTCAGAATCCAATTG
TTGATGCTTTTATTATGTTAATGTCTTGACACATATTGACAATGATGTAT
AATTTGAGGTAAGTTGTATATTTTCCTTATTTAATTGAATCCAAGTCATG
TGGGAAAAACTACGACAAAAGAAATCCATGTCAAGCAAAGCATTTCCTCC
TTCAATCTCCGATTGTTTGAAAGCATTCTTCTTGGACGAAGCAGTGCAGT
GTTAGCCACAAGAAACAGTGGGGTCTTGGTTAAAGCTAAAGCAAAGGTGC
AGTTGATCACTTGTACACAATGCTGATCTGTTTGTAACCATATAGTACAT
ACAGGTGGTCGCCCATGCAAAACGCCTTTCTACCCATATCAAACAAATAG
CTGCAGTACTTAACCTATGCAGTGGCCCTTGCAGTCTCATGGGATTAACC
AACCATTTCAGAGTTTTTTCAGAAACAATCTTAAAGCTGGCATCACTCAG
CAGGGATATAGCTCGCCAGACAAGTCTGCCAGGTCCAAAGGACATTTTCA
GTGGCTATACGGCCTGTGTCCTCTGATGTTTGCAGATCGCTGGACCCCTT
TAGTGTGGTAGGGTAGATTTTCAGGCAAAAAATATGTTAGACTCTCAGGC
CATTTTGAAATCAGGCAACCTGCTGGCTATTAACAAAAAGGCTGTCGATG
GTGTAATGCCAGTTCAGGGGGGAAAACAAAATAGAAAAAATTTGAACAAA
ATGTTTCAAAAGTGCTGTTAAGAGTTCTTGAAAAGCGTAGTCTACTTGTC
CTGCGTGGAGGTCAGAAACTTAGGTCCCAAGGAATCAAGAGGTGCTGTCC
ATCACAGGTGTGCGCTACAAAGGAGAGTTTACCTGTCAGGAGTATGGTCC
ATTATGAGGGCACACCTGCCCAATGACAAATAAACAGGTGAAACAGCACA
CCTGTATCATCTTACTTATCTGGCTGGCTGACAGCTTGTTTGGGAAATAT
AAGCTGGAGACTGTTGCCCAGAATCCTCTGCATTGATAGGATGGAAGAAT
TGCCAATGTAGGGAGAAGTTGCAGCCTTCTTTTTATTGTTACGGAATCAA
ATATAGAAGAAGAAGTAGAATTTTACAGATCATGTATTGAGTTGTTGACT
GTATCTAAGATCTCTCAGTTGAATCCCATGTAGTGTCTTCAAGGTACTTT
CTTTTGTGTGCAAATGTTTGGAAGAATTTATTTTCTTAACTCAAACATTA
TTCTGTGCAAGGCACTCCAAATATACAGACATTTGTTTTGTCATTTTTGG
GGACCACCAGCTATGCATAAACACTCAGAAAAAGGACCAGACCTCCAACC
AGGAGCCTTTTCCTTATATCATGGCATGTCTTCTTTTGTGAGGAATGCCA
CAGTGCCCCAGCATTCTAATCCACACAGCTGAGATACAGAAAACAACCCC
ACACATGGAGAATCTAATTAAAGAAAGAGGGCTTCTCAAACCTGATACAA
AGGAACTGCAAAAGAGAGTAAATATTTTCCATCCATTCATTGTGTTGAAT
CTTAGTGCAAACATCACAGCTGAAGTATCAAAATGTGAGCTTTGTAGGAG
TTCTACTCTCGAAACGTTCACATGGTTTAAACAGCTTGAAATGTTTACAA
AATGGCACTCTTTTTTCCAATGCAGTATACCCCCAGAGCCCTTTGTTAGC
TTGTGCTATGTCTTGAGTTCAGAATGTTTACAAACCAGACCTGTGGGTTA
TTCAAATGGATTTGAGAATGCCATCAGGAATGCAATTATGCAACCATTGA
AATTTTCCTGCTGTTGTAATATGTATTTTCAAAACTTCCTTTGATCAAAA
TGTAGACATTTCTTTGTAAAGAGTACACATGTCATAGTAATTTCTCTATA
AAGCCAAGAACCATCTTCCACCGTAGGATTTGTCTTAAGTTAAGTAAATG
CTAGTTTCTAGACCTTCCCACATGATGTGTTAAACTCACAGAAGTCTCAA
GAAAAACGAAAATGCAGTAATGTTTTTGAAAAAAAGGAATGAAGGGAATC
CCTCCCCTCACAGTAAATAAATCAGCCCAGGGTGTGGAAATGATGTTGGC
CATACAGGCTCCACCAACACGTTTAAACACTTAATTCATAGTCATGGTGG
GAAAGGCGACTTCCTCAAGTTTACGAGGCCAAACTTGCCTGTCAAAACAT
TCTCCCTTTCCCAGGACAGACTGAATTTACTCCAGAGATTTAGTGCACCC
TTAAGCACCATCAATATACAGCTTTCACTTAAGTACAGATTGTTTATTCA
ATGAAGCGATGGATTCTACTGGAAGGAAATGTCGCTCACCCTGGGGGACC
AACTGCTGCTTTTCATAAACAGGAACTCCAGCTGACCTTCAGGCAAAGGT
TGACCTTGACTAACCTGGCATCTTGGACTCATGAGTGTAGATGTAAGATT
CAATTGAAATCATGGAAAACCCAAGTCAGGAATTTGACCTTGTTGAGGAG
GTAGACATTTCCTTCCTGGACTTGACCTTGAAAATTTGGTAGCAACTTTT
TGGTGTTTTTTTGTAACTCTCTGAATGAATGGTAACTCTAGTTTTAAAAA
TTCCCAAACAGGGGCTACTTATTAAGAATACCCAACCCCTTCCCTCAATA
AAAGCTGACCTTACATTGCCCACTTGGCTTAATGATATCTTAGATAACTA
TGAGGTCCAAGACCTAATTCGACATACAAGATTTAACAACTTTTACAGTG
AGACTGCTGTTGAGTGGTGTAGAGCATGAGCTACTGTCCCAGCTCACACC
CTCTCTTGTTGAGGTACTTAAAGATTATGTACAGACAACAAGCCCGTTCA
CAGCTAACCATATAAATCTCCTTGTAGTAAAGATAATAGTGTCAACCTGG
CCTAGCTCCAGCTGAAAACTTGCACTCTTTCTCCATCTGTCTCCTTGGCA
AAGGCAGGCTGGCGAAATGTTTACCCCTGCTGTCAATCAGTAAAGATAAG
ATTGAGAAAGTTTCTGAGTCATGGCCAGACATGGCCTGCCTATAAGCTAA
ATGTTGGTAGAAATTGTGCACAATTTTTCCAAACAGTGCACAACAAGAAT
AACGTTCTTTACGCATGGTGCATTTTTACACGAAATTCTATCAGAATCCA
TGAAATGGAGAAGAAACACTTAATATACAACGTTATAATGATAATTTCGG
GGAATGTTGTTGACGTAGCATGATGTCTTGTCTTGTACAGGGTTTACCAG
GAGGCCCTGGGCCTAAAGGTGACGTCGGAGAAATGGGACAAATGGTAAGT
CCTCATAAGGTCTTGGAGTTGTCAATGTAACATGATGTCTTGTCTTGCAC
AATGTTCAGGGACTACAAGGAGGCCTTGGGCCTAAGGGTGATGTCGGAGA
GATGGGACAAATGGTAAGTCCTCACATTAAGGTCTTGGGGTGGTGCTGAA
AGTTACTCCTAACTCTGATCCATTAGATGTGTTTTAAGAGTAAGGAAAGT
TTAAGGCTGGCACAGTGTCTTGATAATGATAGCATTGGGGGAGAAGCAGC
AATAAACAAGAGACGACTTTGCTATCTTGATCAAAGTCAACTATACCAAA
AAGCTACTATTCCTCATCAAGGAAATATTGTAAGTCTACGATTCTGTTTT
CTCTGTGTTGTTATCACATTTAACATTAACATTACGTCTACGATTCTTAA
TTACAGGGTCCAAGAGGGCCTAGGGGACCAATGGGACCACCGGGCAAGGA
TGGCAAAAGAGTGAGTGGAGTTTATGGCAGTATTAAAAGGCTGAGTAATG
ATTTGTCGGAATTTGAGAAATTGTAGTTGTAAGAAATGTTGACCTAAAAC
AGATGTGAAAGTATCATGCCTAAAAAAACGAGCACTTAACTCAAGGTATA
CTATACGTTGTAACCATATTTAAGATGTAATGATGACACCCATAAAAGAG
CTTGCAATGACTATTGGCCTAGCCTACTTATCAATGATGACATTCTTCAT
GAAGTACATTAACTTTTTGGTGACCTACAGGGAAGACACGGCAAGGACGG
AGGAAGAGGACAACCTGGACAAGATGGTCTGAAGGGTGAGAGGGGCTTCG
ATGGTCTCCCAGGTCTGCCCGGGCAAAAGGGTAACCGGGTAGGTTATCTG
ACTACAAGTCGGTTTTTCCATGATTCTCACTGAAAAAAAGGCAACTCCAT
GTTGCATTCTTTTCATCCTATAATTACAGATAATATATATATATATGTAC
TTTCTATCTACCGGAACATATAAGAAAATGCTGAAGTCATATTTTCATGA
CAAATTAGAGGCATCCGTGGGTACTAATGTAATGGTAATGTATAACAACA
AACTTACAGGTACATTCTTGTTGTTTTTCCACAGGGTGGTCATGGTGGAC
CTGGTCCTTCTGGTCCCCCTGGAGACATAGGAGACAAGGTGCCCACCTCA
CTTTTCTTGAAAGCTCATCTTATACCTCACAATAACCTTTTTTTTGGTTG
TCTTGATTGATTGAATGTTGAAAAGACAATATTTTTGACAGTTGTATCAT
GGAATGTGTTTCCCTCTGTACATGCATGACTTGTGCATGTACAGTATGTA
TATACAACTTATGCAAGAATTCAGACAGCTTTGTATTTGATTTGATGACT
TACGAGAATTGATACTCCATTCTCCAGGTATGAAATTGATGTAGTATTTT
GATGTAACATACATATATTCAAAATACAAAATATTGTCTACTAGGGAGAT
GACGGAGAGCGTGGACTGCCTGGAATGCCCGGTGAGCCGGTAAGTGAAGT
TTATTTTTCAAAGTTGTGTTAGTTTCTTGTATGCTCCAGTTCTCAGTTGC
ACACATAATACACTTCTTTGTGCCCTGTAAAGAATAATCATGTCTGCACA
TTATTTCAAGCTGTACATAGATCAGCATTTGGGAAAGAGTATGGAAGACA
CATCTCTACCAGCGGACCAGCCTCCTGCTGTAGTGACTTGCACAAATGTG
TGGCCCAAGGGCTACAGAAATGGAAGACGTTTGGGATACTTAAACGTTAA
CTTTATAAGATCAGAAAACTACCTGGAATTATGACTGGAACATGGCTCTT
GAAAGATCCATGCTTCTCGCCCTGATAGGCATACATTTATACTACATGTA
TGTGCTTTACATTGTATATGCTAACAAGCTGCTGGTGTGTTCCCTTGTCT
GTGCAGGGTCAGCGAGGTCTGATGGGTCCACGTGGCCCCCCAGGTGTCCA
GGGTCCTCCTGGCATGCCCGGTAACATGGGACCCGGTGGGCTGAAGGGTG
CAACGGTAGGTTTCATGTCATGTCGCTTGAACTATATATTATGCAGCTAT
TTGTGAATACTAAGAAATTTCTGGTAGTAGAGAACTCATACAAATGTATG
TTTAAGTTGTAAGAATTTGTCTGGCATTTGATTGGTACAGGTTAGACTGT
TAGATTAATTATTGCACAATTTTGTTTAACCTTCTCCCTGCTACCTAACT
CTGTAACCAATAGGGAATCGTGTGCAAAATGGCTACTCCAGATTGTTAAC
AGTTAAGAAACGAGAGTAGTAGTATTATTATTATGTACGGATCAATTTTT
ATTCCAGGTATGGTAAGGATGTTAAGTTTAACTAACTTAGTAACTACTGT
TGTTGTTTTTGTTCCAGGGAGCCCCAGGTAAACCAGGTGCACCTGGCCCC
CAGGGTTTGATTGGACCACCTGGATCCCCC Coding sequence (CDS) from alignment at Sc0000685:52509..61538- >transcript:BL97119_cuf10 ID=transcript:BL97119_cuf10|Name=transcript:BL97119_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=801bp|location=Sequence derived from alignment at Sc0000685:52509..61538- (Branchiostoma lanceolatum)
TACATCCCAGGATCTCGAGGCTACCCAGGTCAACCTGGTATCCCGGGACC
AAGAGGTTACCCTGGCCCGTCTGGAGACCCTGGTCCTGCTGGCCCAAGGG
GTCCCCGTGGCAGAGAAGGTCTCCCTGGTGCTGACGGATTGCCTGGACCC
CCTGGACCTGGAATCTCCATCCCTCTGTCTATGCTTGGGAGTCTGGGAAT
GGGTTCTGGCTGCAAGGGACCCGGCTGCAACGAGGCAGCCATGGCTGAGC
AGATCATGGCTGGAATGATTGGACCACCTGGCCCTTCTGGACCTGTTGGC
ATGGCTGGCAGACCTGGACCTTCTGGTTTACCAGGAGGCCCTGGGCCTAA
AGGTGACGTCGGAGAAATGGGACAAATGGGTCCAAGAGGGCCTAGGGGAC
CAATGGGACCACCGGGCAAGGATGGCAAAAGAGGAAGACACGGCAAGGAC
GGAGGAAGAGGACAACCTGGACAAGATGGTCTGAAGGGTGAGAGGGGCTT
CGATGGTCTCCCAGGTCTGCCCGGGCAAAAGGGTAACCGGGGTGGTCATG
GTGGACCTGGTCCTTCTGGTCCCCCTGGAGACATAGGAGACAAGGGAGAT
GACGGAGAGCGTGGACTGCCTGGAATGCCCGGTGAGCCGGGTCAGCGAGG
TCTGATGGGTCCACGTGGCCCCCCAGGTGTCCAGGGTCCTCCTGGCATGC
CCGGTAACATGGGACCCGGTGGGCTGAAGGGTGCAACGGGAGCCCCAGGT
AAACCAGGTGCACCTGGCCCCCAGGGTTTGATTGGACCACCTGGATCCCC
C
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000685 | genome | Sc0000685:52509..61538 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97119_cuf10 |
| Biotype | protein_coding |
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